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1.
J Ethnopharmacol ; 336: 118727, 2025 Jan 10.
Artigo em Inglês | MEDLINE | ID: mdl-39182700

RESUMO

ETHNOPHARMACOLOGICAL RELEVANCE: Ophiocordyceps sinensis (O. sinensis) is a genus of Ascomycete fungus that is endemic to the alpine meadows of the Tibetan Plateau and adjoining Himalayas. It has been used traditionally as a tonic to improve respiratory health in ancient China as well as to promote vitality and longevity. Bioactive components found in O. sinensis such as adenosine, cordycepin, 3-deoxyadenosine, L-arginine and polysaccharides have gained increasing interest in recent years due to their antioxidative and other properties, which include anti-asthmatic, antiviral, immunomodulation and improvement of general health. AIM OF THE STUDY: This study's primary aim was to investigate the effect of a cultivated fruiting body of O. sinensis strain (OCS02®) on airways patency and the secondary focus was to investigate its effect on the lifespan of Caenorhabditis elegans. MATERIALS AND METHODS: A cultivated strain, OCS02®, was employed and the metabolic profile of its cold-water extract (CWE) was analysed through liquid chromatography-mass spectrometry (LC-MS). Organ bath approach was used to investigate the pharmacological properties of OCS02® CWE when applied on airway tissues obtained from adult male Sprague-Dawley rats. The airway relaxation mechanisms of OCS02® CWE were explored using pharmacological tools, where the key regulators in airway relaxation and constriction were investigated. For the longevity study, age-synchronised, pos-1 RNAi-treated wild-type type Caenorhabditis elegans at the L4 stage were utilised for a lifespan assay. RESULTS: Various glycopeptides and amino acids, particularly a high concentration of L-arginine, were identified from the LC-MS analysis. In airway tissues, OCS02® CWE induced a significantly greater concentration-dependent relaxation when compared to salbutamol. The relaxation response was significantly attenuated in the presence of NG-Nitro-L-arginine methyl ester (L-NAME), 1H-[1,2,4]oxadiazolo [4,3-a]quinoxalin-1-one (ODQ) and several K+ channel blockers. The longevity effect induced by OCS02® CWE (5 mg/mL and above) was observed in C. elegans by at least 17%. CONCLUSIONS: These findings suggest that the airway relaxation mechanisms of OCS02® CWE involved cGMP-dependent and cGMP-independent nitric oxide signalling pathways. This study provides evidence that the cultivated strain of OCS02® exhibits airway relaxation effects which supports the traditional use of its wild O. sinensis in strengthening respiratory health.


Assuntos
Carpóforos , Músculo Liso , Ratos Sprague-Dawley , Animais , Masculino , Carpóforos/química , Músculo Liso/efeitos dos fármacos , Relaxamento Muscular/efeitos dos fármacos , Ratos , Traqueia/efeitos dos fármacos , Traqueia/metabolismo , Longevidade/efeitos dos fármacos , Hypocreales
2.
Food Chem ; 462: 140971, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39208734

RESUMO

This study presents the contents of α-methylenecyclopropylglycine, a potentially toxic amino acid, in the peel, pulp and seed fractions of two well-known litchi varieties, namely Shahi and China, over a span of three harvest-seasons. For analysing α-methylenecyclopropylglycine, an LC-MS/MS-based method was validated. The method-accuracies fell within 75-110 % (RSD, <15 %) at 0.1 mg/kg (LOQ) and higher levels. A comparative evaluation of the results in peel, pulp and seed at 30 days before harvest (DBH), 15-DBH, and edible-ripe stage revealed that α-methylenecyclopropylglycine content increased as the litchi seeds grew towards maturity, regardless of the cultivar. In arils, at maturity, the concentration of α-methylenecyclopropylglycine ranged from not-detected to 11.7 µg/g dry weight. The Shahi cultivar showed slightly higher α-methylenecyclopropylglycine content in comparison to China litchi. This paper presents the first known analysis of combined seasonal data on different fruit components at various growth stages for the two chosen litchi cultivars grown in India.


Assuntos
Frutas , Litchi , Sementes , Espectrometria de Massas em Tandem , Litchi/química , Litchi/crescimento & desenvolvimento , Litchi/metabolismo , Frutas/química , Frutas/crescimento & desenvolvimento , China , Sementes/química , Sementes/crescimento & desenvolvimento , Glicina/análogos & derivados , Glicina/análise , Cromatografia Líquida de Alta Pressão , Ciclopropanos/análise
3.
Clin Chim Acta ; 564: 119939, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39197698

RESUMO

BACKGROUND AND AIMS: Current laboratory methods for opioid detection involve an initial screening with immunoassays which offers efficient but non-specific results and a subsequent liquid chromatography-tandem mass spectrometry (LC-MS/MS) confirmation which offers accurate results but requires extensive sample preparation and turnaround time. Direct Analysis in Real Time (DART) tandem mass spectrometry is evaluated as an alternative approach for accurate opioid detection with efficient sample preparation and turnaround time. MATERIALS AND METHODS: DART-MS/MS was optimized by testing the method with varying temperatures, operation modes, extraction methods, hydrolysis times, and vortex times. The method was evaluated for 12 opioids by testing the analytical measurement range, percent carryover, precision studies, stability, and method-to-method comparison with LC-MS/MS. RESULTS: DART-MS/MS shows high sensitivity and specificity for the detection of 6-acetylmorphine, codeine, hydromorphone, oxymorphone, hydrocodone, naloxone, buprenorphine, norfentanyl, and fentanyl in urine samples. However, its performance was suboptimal for norbuprenorphine, morphine and oxycodone. CONCLUSION: In this proof-of-concept study, DART-MS/MS is evaluated for its rapid quantitative definitive testing of opioids drugs in urine. Further research is needed to expand its application to other areas of drug testing.


Assuntos
Analgésicos Opioides , Espectrometria de Massas em Tandem , Humanos , Espectrometria de Massas em Tandem/métodos , Analgésicos Opioides/urina , Cromatografia Líquida/métodos , Fatores de Tempo
4.
Methods Mol Biol ; 2853: 205-234, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39460923

RESUMO

Increasing demand of protein biotherapeutics produced using Chinese hamster ovary (CHO) cell lines necessitates improvement in the production yield of the bioprocess. Various cell engineering, improved media formulation and process-design based approaches utilizing the power of OMICS technologies, specifically, genomics and proteomics, have been employed; however, the potential of metabolomics largely remains unexplored. Metabolomics enables the detection, identification, and/or quantitation of small molecules, commonly known as metabolites, in and around the cells and may help to unlock the cellular molecular mechanism(s) that regulates cell growth and productivity in the bioprocess and improves cellular performance during the bioprocess. Currently, liquid chromatography (LC)/gas chromatography (CG)- coupled with mass-spectrometry (MS) and nuclear magnetic resonance (NMR) spectroscopy are the most commonly used approaches for metabolomics. Therefore, in this chapter, we have discussed the standard procedures of investigating CHO metabolites using LC/GC-MS and/or NMR-based approaches.


Assuntos
Cricetulus , Cromatografia Gasosa-Espectrometria de Massas , Espectroscopia de Ressonância Magnética , Metabolômica , Células CHO , Animais , Metabolômica/métodos , Cromatografia Gasosa-Espectrometria de Massas/métodos , Espectroscopia de Ressonância Magnética/métodos , Cromatografia Líquida/métodos , Cricetinae , Metaboloma
5.
Methods Mol Biol ; 2853: 235-248, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39460924

RESUMO

Identifying and quantifying host cell proteins (HCPs) are crucial in developing and manufacturing biopharmaceutical products. ELISA has been used widely for identifying and quantifying HCPs in biopharmaceutical products. Liquid chromatography-mass spectrometry (LC-MS) has recently emerged as an orthogonal tool for HCP analysis, providing comprehensive and quantitative information on individual HCPs. This chapter explores the advancements in LC-MS/MS methodologies for HCP analysis, including sample preparation, data acquisition modes, and data analysis strategies. It also discusses the challenges of HCP identification and quantitation, and recent innovations to overcome these limitations. The application of LC-MS/MS methods in HCP profiling holds significant promise for improving process control and ensuring product safety in biopharmaceutical manufacturing.


Assuntos
Espectrometria de Massas em Tandem , Espectrometria de Massas em Tandem/métodos , Cromatografia Líquida/métodos , Animais , Humanos , Proteômica/métodos , Proteínas/análise , Ensaio de Imunoadsorção Enzimática/métodos , Produtos Biológicos/análise
6.
Methods Mol Biol ; 2859: 239-251, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39436605

RESUMO

Posttranslational modifications (PTMs) of proteins regulate several biological processes, and investigating their diversity is crucial for understanding the mechanisms of cell regulation. Glycosylation is one of the most complex posttranslational modifications that control fundamental cellular processes such as protein folding, protein trafficking, host-pathogen interactions, cell adhesion, and cytokine receptor signaling networks. N-linked glycosylation denotes the attachment of glycans (oligosaccharides) to a nitrogen atom of asparagine (N) residues in the consensus motif Asn-X-Ser/Thr (NXS/T), where X is any amino acid except proline. Therefore, mutations in this posttranslational modification (i.e., N-glycosylation) site cause many human genetic diseases, including cancer. In the past decade, high-throughput quantitative proteome profiling tools have significantly renewed our interest in discovering novel cancer diagnostic or prognostic biomarkers through the simultaneous examination of the enormous amount of high-quality data of thousands of proteins and genes in complex biological systems. In this chapter, we describe how aberrant N-linked glycopeptides could be selectively identified as novel single tumor markers through the use of mass spectrometry (MS)-based proteomics, also known as Solid-phase extraction of N-glycopeptides (SPEG), and reasonable hypotheses that have the potential capacity to revolutionize biomarker discovery and bring those markers to the clinic as early as possible.


Assuntos
Glicopeptídeos , Processamento de Proteína Pós-Traducional , Proteômica , Humanos , Proteômica/métodos , Glicosilação , Glicopeptídeos/metabolismo , Glicopeptídeos/análise , Glicopeptídeos/química , Biomarcadores Tumorais/metabolismo , Extração em Fase Sólida , Glicoproteínas/metabolismo , Glicoproteínas/química , Espectrometria de Massas/métodos , Neoplasias/metabolismo , Neoplasias/genética , Proteoma/análise , Proteoma/metabolismo , Espectrometria de Massas em Tandem/métodos
7.
Talanta ; 281: 126810, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39241641

RESUMO

Clozapine (CLO) is an atypical antipsychotic drug indicated for the treatment of schizophrenia. The treatment effectiveness of CLO is better than that of other atypical antipsychotics, and it has the advantage of being able to determine its effectiveness by measuring its concentration in the patient's blood. Thus, sensitive, selective, and accurate determination of CLO in blood is highly significant for treatment monitoring. This study describes the design and fabrication of a molecularly imprinted polymer (MIP)-based electrochemical sensor for CLO determination. This is the first MIP-based electrochemical application in the literature for CLO determination. Employing the thermal polymerization approach, the MIP was formed on the glassy carbon electrode (GCE) using CLO as the template, trans-3-(3-Pyridyl)acrylic acid (3,3-TA) as the functional monomer, and the support of zinc oxide nanoparticles (ZnO NPs). Elaborate characterizations in terms of surface morphology and electrochemistry were performed via scanning electron microscopy (SEM), cyclic voltammetry (CV), and electrochemical impedance spectroscopy (EIS) methods. An indirect approach was employed to determine CLO in standard solution, real human biological samples, and tablet formulation, using 5 × 10-3 M [Fe(CN)6]3-/4- solution as the redox probe. The limit of detection (LOD) values for the standard solution and serum sample were calculated as 2.9 × 10-11 M and 6.01 × 10-12 M, respectively. These values and recovery studies confirmed the sensor's sensitivity and feasibility. The measurements in the presence of similarly structured compounds (olanzapine and quetiapine fumarate) verified the sensor's superior selectivity. Moreover, the developed sensor's performance was compared and verified using an LC-MS/MS method using the student's t-test and F-test.


Assuntos
Antipsicóticos , Clozapina , Técnicas Eletroquímicas , Polímeros Molecularmente Impressos , Espectrometria de Massas em Tandem , Clozapina/sangue , Clozapina/análise , Clozapina/química , Polímeros Molecularmente Impressos/química , Humanos , Antipsicóticos/sangue , Antipsicóticos/química , Espectrometria de Massas em Tandem/métodos , Técnicas Eletroquímicas/métodos , Cromatografia Líquida/métodos , Limite de Detecção , Eletrodos , Impressão Molecular , Polímeros/química , Espectrometria de Massa com Cromatografia Líquida
8.
J Pharm Biomed Anal ; 252: 116485, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39341053

RESUMO

Pharmacokinetic (PK) analysis is an integral part of drug development. Health agency guidance provides development and validation recommendations for PK bioanalytical methods run in one laboratory. However, as a drug development program progresses, a PK bioanalytical method may need to be run in more than one laboratory. Additionally, a PK bioanalytical method format may change and a new method platform may be validated and implemented during the drug development cycle. Here we describe the cross validation strategy for comparisons of two validated bioanalytical methods used to generate PK data within the same study or across different studies. Current guidance for cross validations is limited and, therefore, Genentech, Inc. has developed a cross validation experimental strategy that utilizes incurred samples along with a comprehensive statistical analysis. One hundred incurred study samples over the applicable range of concentrations are selected based on four quartiles (Q) of in-study concentration levels. The samples are assayed once in the two bioanalytical methods. Bioanalytical method equivalency is assessed for the 100 samples based on pre-specified acceptability criterion: the two methods are considered equivalent if the percent differences in the lower and upper bound limits of the 90 % confidence interval (CI) are both within ±30 %. Quartile by concentration analysis using the same criterion may also need to be performed. A Bland-Altman plot of the percent difference of sample concentrations versus the mean concentration of each sample is also created to help further characterize the data. This strategy is a robust assessment of PK bioanalytical method equivalency and includes subgroup analyses by concentration to assess for biases. This strategy was implemented in two case studies: 1) two different laboratories using the same bioanalytical method and 2) a bioanalytical method platform change from enzyme-linked immunosorbent assay (ELISA) to multiplexing immunoaffinity (IA) liquid chromatography tandem mass spectrometry (IA LC-MS/MS).


Assuntos
Farmacocinética , Humanos , Projetos de Pesquisa , Reprodutibilidade dos Testes , Desenvolvimento de Medicamentos/métodos , Preparações Farmacêuticas/metabolismo , Preparações Farmacêuticas/sangue
9.
Food Chem ; 463(Pt 1): 141130, 2025 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-39243621

RESUMO

The study focuses on the comprehensive analysis of glutamyl dipeptides in cheese, particularly their formation during the cheese ripening process and the influence of various factors, such as origin, the use of various mold cultures, and cheese types. For the first time, all three subgroups of glutamyl dipeptides, namely α-Glu-X, X-Glu, and γ-Glu-X, are covered in a comprehensive analytical LC-MS/MS method offering robust quantitation of all 56 glutamyl dipeptides. The workflow includes a simplified extraction protocol and an optimized separation of the analytes on the stationary phase. Validation experiments demonstrate the method's reliability, including repeatability, detection limits, and recovery. The comprehensive analysis of all glutamyl dipeptides in 122 cheese samples with ripening times between 2 weeks and 15 years shows a strong increase in all peptide classes with prolonged ripening and particularly in the presence of mold.


Assuntos
Queijo , Dipeptídeos , Espectrometria de Massas em Tandem , Paladar , Queijo/análise , Queijo/microbiologia , Dipeptídeos/análise , Dipeptídeos/metabolismo , Cromatografia Líquida de Alta Pressão , Humanos , Fungos/crescimento & desenvolvimento , Fungos/metabolismo , Ensaios de Triagem em Larga Escala
10.
J Pharm Biomed Anal ; 252: 116518, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39405785

RESUMO

Transforming growth factor-ß superfamily members, such as myostatin, growth/differentiation factor 11, and activin A, negatively regulate skeletal muscle mass. Inhibitors targeting these cytokines or activin receptor type IIB have the potential to treat muscular diseases and enhance physical performance. However, because of their effects on muscle mass and potential misuse, they are strictly prohibited in sports. Given the high potential for misuse as a doping agent in sports, effective analytical methods for these prohibited antibodies targeting these specific cytokines or their receptor are critically needed. In this study, we aimed to develop and validate a multitarget method to detect the prohibited transforming growth factor-ß superfamily-targeting monoclonal antibodies, such as landogrozumab, domagrozumab, and the activin receptor type IIB-targeting antibody, bimagrumab, in human plasma and dried blood spot (DBS) samples using liquid chromatography-tandem mass spectrometry. Antibodies were purified from both the DBS and plasma samples using protein G magnetic beads and field-asymmetric ion mobility spectrometry (FAIMS) to minimize interference, followed by liquid chromatography-tandem mass spectrometry analysis. The validation process included tests for specificity, selectivity, linearity, limit of detection (LOD), limit of identification, precision, recovery, carryover effect, and matrix effect. The LODs for the target antibodies were identical in both DBS and plasma samples at 0.1 µg/mL for landogrozumab heavy and light chains, as well as 0.25 µg/mL for the domagrozumab light chain and 0.25 µg/mL for the bimagrumab heavy chain. However, the heavy chain of domagrozumab exhibited an LOD of 0.5 µg/mL in DBS and 1 µg/mL in plasma. The analytical method demonstrated strong linearity, with R² values greater than 0.99 for both plasma and DBS, and no carryover effect. Precision (CV%) was below 15 % at both middle (1 or 5 µg/mL; specific to the heavy chain of domagrozumab in plasma) and high (10 µg/mL) concentrations and was less than 20 % at the LOD. The selectivity and specificity indicated no interference in the analysis of target mAbs in different blood samples. Recovery was 31.6-49.8 % for DBS and 51.4-85.3 % for plasma, with no significant matrix effect. This study provides an effective method for doping analysis and novel protein detection.


Assuntos
Anticorpos Monoclonais , Dopagem Esportivo , Teste em Amostras de Sangue Seco , Limite de Detecção , Miostatina , Espectrometria de Massas em Tandem , Humanos , Espectrometria de Massas em Tandem/métodos , Miostatina/antagonistas & inibidores , Miostatina/sangue , Miostatina/imunologia , Teste em Amostras de Sangue Seco/métodos , Anticorpos Monoclonais/sangue , Anticorpos Monoclonais/imunologia , Dopagem Esportivo/prevenção & controle , Cromatografia Líquida/métodos , Espectrometria de Mobilidade Iônica/métodos , Reprodutibilidade dos Testes , Anticorpos Monoclonais Humanizados/sangue , Anticorpos Monoclonais Humanizados/imunologia , Receptores de Activinas Tipo II/imunologia , Detecção do Abuso de Substâncias/métodos
11.
J Pharm Biomed Anal ; 252: 116473, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39298838

RESUMO

In recent years, the expanding array of psychotropic medications has led to an increase in drug-drug interactions, particularly with combinations of different antipsychotics or psychotropic medications in clinical practice. However, the potential pharmacokinetic interactions between Lurasidone and Clozapine have not been extensively studied. Thus, this study aims to investigate these potential interactions by analyzing their pharmacokinetics in rat plasma after single oral administrations using developed LC-MS/MS methods. The study revealed notable changes in Lurasidone's pharmacokinetic parameters between single and combination administrations. Specifically, there were significant reductions in t1/2 and Vd by 3.3 and 1.5-fold (p < 0.05) respectively, while Cmax and AUC0-t proved a significant increase by 1.8 and 1.6-fold (p < 0.05) respectively following the combination administration. Furthermore, separate co-administration markedly decreased Clozapine's Cmax and AUC 0-t by 1.6 and 1.3-fold (p < 0.05) respectively, after the combination administration. Moreover, the AUC ratio for Lurasidone was 0.2, indicating a diminished therapeutic effect, whereas the AUC ratio for Clozapine suggested an elevated risk of adverse effects. These findings confirm the presence of drug-drug interactions between Lurasidone and Clozapine, suggesting potential implications for treatment efficacy. Recommendations for future clinical research include conducting pharmacodynamic studies to evaluate the impact of Lurasidone and Clozapine combination therapy. This underscores the importance of thoroughly assessing these interactions for clinical relevance and provides a scientific foundation for future evaluations of this drug combination.


Assuntos
Antipsicóticos , Clozapina , Interações Medicamentosas , Cloridrato de Lurasidona , Ratos Sprague-Dawley , Espectrometria de Massas em Tandem , Clozapina/farmacocinética , Clozapina/administração & dosagem , Clozapina/sangue , Clozapina/efeitos adversos , Cloridrato de Lurasidona/farmacocinética , Cloridrato de Lurasidona/administração & dosagem , Animais , Espectrometria de Massas em Tandem/métodos , Ratos , Administração Oral , Antipsicóticos/farmacocinética , Antipsicóticos/administração & dosagem , Antipsicóticos/efeitos adversos , Antipsicóticos/sangue , Masculino , Farmacovigilância , Cromatografia Líquida/métodos , Área Sob a Curva , Espectrometria de Massa com Cromatografia Líquida
12.
J Pharm Biomed Anal ; 252: 116477, 2025 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-39321489

RESUMO

Breast cancer is strongly connected with elevated oxidative stress. Oxidative modifications of hemoglobin can serve as biomarkers for monitoring oxidative stress status in vivo. The structure of hemoglobin modifications derived from malondialdehyde (MDA) in human blood hemoglobin exists as N-propenal and dihydropyridine (DHP). This study reports the simultaneous quantification of eleven modified peptides in hemoglobin derived from MDA and advanced histidine oxidation in 16 breast cancer patients and 16 healthy women using nanoflow liquid chromatography nanoelectrospray ionization tandem mass spectrometry. The results reveal statistically significant increases in the formation of MDA-derived N-propenal and DHP of lysine and advanced oxidation of histidine in hemoglobin of breast cancer patients with the Mann-Whitney U-test p values < 0.0001 and the AUC of ROC between 0.9277 and 1.0. Furthermore, the elevation in modified peptides is significant in patients with early stages of breast cancer. By measuring these oxidative modifications in hemoglobin from a drop of blood, the role of lipid peroxidation and oxidative stress in breast cancer can be assessed using this sensitive assay.


Assuntos
Neoplasias da Mama , Hemoglobinas , Malondialdeído , Oxirredução , Estresse Oxidativo , Espectrometria de Massas em Tandem , Humanos , Neoplasias da Mama/sangue , Neoplasias da Mama/metabolismo , Feminino , Hemoglobinas/análise , Hemoglobinas/metabolismo , Espectrometria de Massas em Tandem/métodos , Pessoa de Meia-Idade , Adulto , Malondialdeído/sangue , Cromatografia Líquida/métodos , Peroxidação de Lipídeos , Peptídeos/química , Peptídeos/sangue , Idoso
13.
Meat Sci ; 219: 109671, 2025 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-39341018

RESUMO

Meat quality is a key factor influencing consumer purchasing decisions. Muscle composition consists of various types of myofibers (type I and type IIa, IIb, IIx myofibers), and the relative composition of fiber types has a significant impact on the overall biochemical properties and flavor of fresh meat. However, the relationship between biochemical changes in myofibers and their impact on meat quality remains underexplored. In this study, we compared the differences in meat quality by examining different muscles in rabbits, each containing different muscle fiber types. We focused on the adductor (ADD) and semitendinosus (ST) as our research subjects and investigated skeletal muscle metabolism at the individual myofibers level using Spatial metabolomics. Additionally, we utilized LC-MS and RNA-Seq to explore the molecular mechanisms underlying the metabolic differences between red and white muscle fibers. Our findings demonstrated that variations in myofiber composition significantly influenced meat color, pH, water content, and drip loss. Spatial metabolomics analysis identified 22 unique red and white muscle fingerprint metabolites, while LC-MS analysis revealed 123 differential metabolites, and these differential metabolites were mainly enriched in the pathways of ABC transporters, Biosynthesis of amino acids, glutathione metabolism, and arginine biosynthesis. To further elucidate the molecular mechanism of differential metabolism in ADD and ST, we identified 2248 differentially expressed genes (DEGs) by RNA-Seq and then combined DEGs with DMs for joint analysis. We found that red muscle exhibited higher levels of metabolites such as L-glutamic acid, glutathione, ascorbate, ornithine, oxidized glutathione, gamma-L-glutamyl-L-cysteine, cysteinylglycine, fumaric acid, gamma-aminobutyric acid. Additionally, related metabolic genes such as MGST1, ODC1, MGST3 and PRDX6 were highly expressed in ST muscle. These metabolites and genes were enriched in the glutathione and nicotinamide pathways, and had significant effects on meat color and drip loss. Moreover, red muscle contained more flavor compounds and nutrients, including adenosine monophosphate (AMP), ornithine, citrulline, taurine, acetyl phosphate, L-glutamic acid metabolites, as well as taurine and hypotaurine metabolites. Our results demonstrate that fresh meat with a higher proportion of red muscle fibers exhibited superior meat quality, enhanced flavor, and higher nutrient content. Furthermore, red muscle contains more antioxidant metabolites that can effectively prevent meat oxidation during the production process.


Assuntos
Metabolômica , Músculo Esquelético , RNA-Seq , Animais , Coelhos , Metabolômica/métodos , RNA-Seq/métodos , Músculo Esquelético/metabolismo , Músculo Esquelético/química , Paladar , Cromatografia Líquida/métodos , Carne/análise , Masculino , Espectrometria de Massas/métodos , Cor , Espectrometria de Massa com Cromatografia Líquida
14.
Methods Mol Biol ; 2854: 93-106, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39192122

RESUMO

As an interferon-stimulating factor protein, STING plays a role in the response and downstream liaison in antiviral natural immunity. Upon viral invasion, the immediate response of STING protein leads to a series of changes in downstream proteins, which ultimately leads to an antiviral immune response in the form of proinflammatory cytokines and type I interferons, thus triggering an innate immune response, an adaptive immune response in vivo, and long-term protection of the host. In the field of antiviral natural immunity, it is particularly important to rigorously and sequentially probe the dynamic changes in the antiviral natural immunity connector protein STING caused by the entire anti-inflammatory and anti-pathway mechanism and the differences in upstream and downstream proteins. Traditionally, proteomics technology has been validated by detecting proteins in a 2D platform, for which it is difficult to sensitively identify changes in the nature and abundance of target proteins. With the development of mass spectrometry (MS) technology, MS-based proteomics has made important contributions to characterizing the dynamic changes in the natural immune proteome induced by viral infections. MS analytical techniques have several advantages, such as high throughput, rapidity, sensitivity, accuracy, and automation. The most common techniques for detecting complex proteomes are liquid chromatography (LC) and mass spectrometry (MS). LC-MS (Liquid Chromatography-Mass Spectrometry), which combines the physical separation capability of LC and the mass analysis capability of MS, is a powerful technique mainly used for analyzing the proteome of cells, tissues, and body fluids. To explore the combination of traditional proteomics techniques such as Western blotting, Co-IP (co-Immunoprecipitation), and the latest LC-MS methods to probe the anti-inflammatory pathway and the differential changes in upstream and downstream proteins induced by the antiviral natural immune junction protein STING.


Assuntos
Imunidade Inata , Proteômica , Proteômica/métodos , Cromatografia Líquida/métodos , Humanos , Western Blotting/métodos , Espectrometria de Massas/métodos , Imunoprecipitação/métodos , Animais , Proteínas de Membrana/metabolismo , Proteínas de Membrana/imunologia , Espectrometria de Massa com Cromatografia Líquida
15.
Methods Mol Biol ; 2854: 29-34, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39192115

RESUMO

Mass spectrometers are widely used to identify protein phosphorylation sites. The process usually involves selective isolation of phosphoproteins and subsequent fragmentation to identify both the peptide sequence and phosphorylation site. Immunoprecipitation could capture and purify the protein of interest, greatly reducing sample complexity before submitting it for mass spectrometry analysis. This chapter describes a method to identify an abnormal phosphorylated site of the adaptor protein by a viral kinase through immunoprecipitation followed by LC-MS/MS.


Assuntos
Imunoprecipitação , Fosfoproteínas , Espectrometria de Massas em Tandem , Fosforilação , Espectrometria de Massas em Tandem/métodos , Imunoprecipitação/métodos , Cromatografia Líquida/métodos , Humanos , Fosfoproteínas/metabolismo , Fosfoproteínas/análise , Espectrometria de Massas/métodos
16.
Methods Mol Biol ; 2855: 23-39, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39354299

RESUMO

Metabolomics can be used for a multitude of purposes, including monitoring of treatment effects and for increasing the knowledge of the pathophysiology of a wide range of diseases. Global (commonly referred to as "untargeted") metabolomics is hypothesis-generating and provides the opportunity to discover new biomarkers. Being versatile and having a high degree of selectivity and sensitivity, liquid chromatography-mass spectrometry (LC-MS) is the most common technique applied for metabolomics. We here present our global metabolomics LC-electrospray ionization-MS/MS method. The sample preparation procedures for plasma, serum, dried blood spots, urine, and cerebrospinal fluid are simple and nonspecific to reduce the risk of analyte loss. The method is based on reversed-phase chromatography using a diphenyl column. The high-resolution Q Exactive Orbitrap MS with data-dependent acquisition provides MS/MS spectra of a wide range of analytes. Our method covers a large part of the metabolome regarding hydrophobicity and compound class.


Assuntos
Metabolômica , Espectrometria de Massas em Tandem , Metabolômica/métodos , Humanos , Cromatografia Líquida/métodos , Espectrometria de Massas em Tandem/métodos , Biomarcadores/sangue , Biomarcadores/urina , Espectrometria de Massas por Ionização por Electrospray/métodos , Metaboloma , Teste em Amostras de Sangue Seco/métodos , Cromatografia de Fase Reversa/métodos , Espectrometria de Massa com Cromatografia Líquida
17.
Methods Mol Biol ; 2855: 67-84, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39354301

RESUMO

Untargeted metabolomics is a powerful profiling tool for the discovery of possible biomarkers of disease onset and progression. Analytical pipelines applying liquid chromatography (LC) and mass spectrometry (MS)-based methods are widely used to survey a broad range of metabolites within various metabolic pathways, including organic acids, amino acids, nucleosides, and lipids. Accurate and complete identification of putative metabolites is an ongoing challenge in untargeted metabolomics studies. Highly sensitive instrumentation can result in the detection of adduct and fragment ions that form reproducibly and contain identifiable ions that are difficult to distinguish from metabolic pathway intermediates, which may result in false-positive identification. At concentrations as low as 10 µM, free fatty acids have been found to form homo- and heterodimers in untargeted metabolomics pipelines that resemble the lipid class fatty acid esters of hydroxy fatty acids (FAHFAs), resulting in misidentification. This chapter details a protocol for LC-MS-based untargeted metabolomics using hydrophilic interaction chromatography (HILIC) that specifically aids in distinguishing artifactual fatty acid dimers from endogenous FAHFAs.


Assuntos
Ésteres , Ácidos Graxos , Espectrometria de Massas , Metabolômica , Ácidos Graxos/análise , Ácidos Graxos/metabolismo , Ácidos Graxos/química , Cromatografia Líquida/métodos , Ésteres/análise , Ésteres/química , Ésteres/metabolismo , Metabolômica/métodos , Espectrometria de Massas/métodos , Artefatos , Dimerização , Hidroxiácidos/análise , Hidroxiácidos/metabolismo , Hidroxiácidos/química , Interações Hidrofóbicas e Hidrofílicas , Humanos , Espectrometria de Massas em Tandem/métodos , Espectrometria de Massa com Cromatografia Líquida
18.
Methods Mol Biol ; 2855: 133-145, 2025.
Artigo em Inglês | MEDLINE | ID: mdl-39354305

RESUMO

Endocannabinoids (ECBs) are lipid-derived endogenous molecules with important physiological roles such as regulation of energy balance, immunity, or neural development. Quantitation of ECBs helps better understand their physiological role and modulation of biological processes. This chapter presents the simultaneous quantification of 14 ECBs and related molecules in the brain, liver, and muscle, as well as white and brown adipose tissue using liquid chromatography-tandem mass spectrometry (LC-MS/MS). The dynamic range of the method has been tuned to cover the endogenous concentrations of these analytes given the fact that they are endogenously present at different orders of magnitude. Specifically, three groups are established: 0.5-5000 ng/mL for 2-oleoyl- and 2-linoleoylglycerol and arachidonic acid, 0.05-500 ng/mL for 2-arachidonoylglycerol, and 0.0005-0.5 ng/mL for anandamide, palmitoyl-, palmitoleoyl-, stearoyl-, oleoyl-, linoleoyl-, alpha-linolenoyl-, dihomo-gamma-linolenoyl-, docosahexaenoyl-, and pentadecanoylethanolamide.


Assuntos
Endocanabinoides , Espectrometria de Massas em Tandem , Endocanabinoides/análise , Endocanabinoides/metabolismo , Espectrometria de Massas em Tandem/métodos , Cromatografia Líquida/métodos , Animais , Encéfalo/metabolismo , Fígado/metabolismo , Fígado/química , Camundongos , Espectrometria de Massa com Cromatografia Líquida
19.
Clin Biochem ; : 110839, 2024 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-39489391

RESUMO

Cystatin C (CysC) belongs to the cysteine protease inhibitor superfamily and is produced by all nucleated cells in the body in very stable amounts independent of age, sex, diet, and muscle mass. CysC is considered an ideal biomarker for assessing glomerular filtration rate (GFR) compared to traditional biomarkers for assessing GFR, such as creatinine. However, CysC is not sufficiently utilized for GFR assessment by clinicians, probably for various reasons such as insufficient understanding among clinicians or a lack of standardized quantitative methods. This review discusses and analyzes the aforementioned issues from the perspective of laboratory technicians.

20.
Biomed Chromatogr ; : e6034, 2024 Oct 31.
Artigo em Inglês | MEDLINE | ID: mdl-39482854

RESUMO

To facilitate clinical therapeutic drug monitoring (TDM) of polymyxin B (PB) and polymyxin E (PE), we developed and validated a simple LC-MS/MS method for simultaneous determination of PB (including polymyxin B1 (PB1), polymyxin B2 (PB2), polymyxin B3 (PB3) and isoleucine-polymyxin B1 (ile-PB1)) and PE (including polymyxin E1 (PE1) and polymyxin E2 (PE2)) in human plasma. PB or PE was extracted from 20.0 µL plasma using a 5% (v/v) formic acid acetonitrile solution and separated on a BEH-C18 column (2.1 × 100 mm, 1.7 µm) with a mobile phase consisting of 0.8% formic acid aqueous solution and 0.2% formic acid acetonitrile solution. Gradient elution was performed over 5.5 min at a flow rate of 0.250 mL/min. Quantitative analysis was conducted in positive ion scanning mode by electrospray ionization and multiple reaction monitoring. The method validation was conducted based on bioanalytical method validation guidance, including specificity, calibration curve, precision, accuracy, recovery, matrix effect, stability and dilution integrity and all of the results satisfied the requirements. The method was simple, robust and high-throughput and is currently being used to provide a TDM service to enhancing therapeutic efficacy and safety use of the PB and PE.

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