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1.
Antonie Van Leeuwenhoek ; 118(1): 15, 2024 Oct 05.
Artigo em Inglês | MEDLINE | ID: mdl-39367931

RESUMO

During extensive field explorations of the Lateritic area in West Bengal, one remarkable wild Russuloid macrofungus, ethnically termed "Kend Patra," was collected. The species was known to enrich the diet of the local people, being considered as income source for some tribal groups. Using morphological characters and molecular analysis of this collection, provide a unique placement of the taxon in the Russula subgenus Compactae (Fr.) Bon. Further in order to find functional constituents for biopharma applications, methanolic extract was prepared that shows the existence of a substantial amounts of phenol, flavonoid, ascorbic acid and carotenoids. Antioxidant activity was determined where the fraction demonstrated strong DPPH, ABTS, and nitric oxide radical scavenging activities, high Fe2+ ion chelating ability, and a reducing power with EC50 values ranging from 538.69 to 891.75 µg/ml. The extract was found to be effective against Listeria monocytogenes, Bacillus subtilis, Pseudomonas aeruginosa, Escherichia coli, Salmonella typhi and Staphylococcus aureus. In addition, the extract exhibited potent anticancer activities as it inhibited A549 cell proliferation, caused morphological changes, elevated ROS levels, hindered the clonogenic ability and migratory potential of cancerous cells, arrested cell cycle progression at S phase, and induced apoptosis by modulating the intrinsic mitochondrial pathway. Overall, this study contributes a new species to the world's myco-diversity and presents an exciting opportunity for future researchers to conduct comprehensive investigations on this unique species in order to uncover potential new medications for human use.


Assuntos
Antineoplásicos , Antioxidantes , Humanos , Antioxidantes/farmacologia , Antioxidantes/química , Antineoplásicos/farmacologia , Antineoplásicos/química , Antibacterianos/farmacologia , Antibacterianos/química , Basidiomycota/química , Basidiomycota/classificação , Testes de Sensibilidade Microbiana , Células A549 , Proliferação de Células/efeitos dos fármacos , Apoptose/efeitos dos fármacos , Bactérias/efeitos dos fármacos , Bactérias/classificação , Bactérias/genética
2.
Int J Syst Evol Microbiol ; 74(10)2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39466839

RESUMO

During the course of two independent studies conducted in Hungary and Spain, four conspecific yeast strains were isolated from flowers of different plant species. DNA sequences of two barcoding regions, the D1/D2 domain of the LSU rRNA gene and the internal transcribed spacer (ITS) region (ITS1-5.8S rRNA gene-ITS2), revealed that the four strains represent an undescribed Vishniacozyma (family Bulleribasidiaceae, Basidiomycota) species. In terms of pairwise sequence similarities and according to our phylogenetic analyses of the concatenated DNA sequences of the ITS region and the D1/D2 domain of the LSU rRNA gene, the undescribed species is most closely related to Vishniacozyma melezitolytica, a yeast species of phylloplane origin. The novel species differs from the type strain of V. melezitolytica by 8 substitutions and 3 insertion/deletion (indels) and 11 substitutions and 5 indels along the D1/D2 domain of the LSU rRNA gene and the ITS region, respectively. In addition to the DNA sequence divergences, the two species differ in some physiological characters as well. We propose the species Vishniacozyma floricola sp. nov. to accommodate the above-noted strains (holotype, NCAIM Y.02320; isotype, CBS 18939; MycoBank number, 856028).


Assuntos
Basidiomycota , DNA Fúngico , DNA Espaçador Ribossômico , Flores , Filogenia , Análise de Sequência de DNA , DNA Fúngico/genética , Flores/microbiologia , DNA Espaçador Ribossômico/genética , Basidiomycota/genética , Basidiomycota/classificação , Basidiomycota/isolamento & purificação , Hungria , Espanha , Técnicas de Tipagem Micológica
3.
Microb Ecol ; 87(1): 122, 2024 Oct 08.
Artigo em Inglês | MEDLINE | ID: mdl-39379763

RESUMO

Based on morphological and phylogenetic evidence, two novel species of Melampsora were discovered on Hypericum pseudohenryi in China and have been thoroughly characterized. One of these species, designated as M. danbaensis, exhibits distinct features such as aecia of Uredo-type, typically appearing in gregarious or grouped arrangements, and presenting a shallowly pulvinate structure. Aeciospores exhibit tremendous variations in size, ranging in shape from globose to ellipsoidal and bearing pronounced verrucose texture. Telia resemble crusts one-spore deep, covering nearly the entire abaxial leaf surface, with sessile teliospores reaching sizes of up to 65.8 µm, and exhibiting a clavate to cylindrical shape. Another species, designated as M. hyperici-pseudohenryi, is distinguished by Uredo-type uredinia, which are hypophyllous, scattered or grouped, and interspersed with numerous paraphyses. Its urediniospores tend to be globose, ellipsoidal or obovoid, echinulate, and are accompanied by clavate to capitate paraphyses reaching lengths up to 77.6 µm. Phylogenetically, both species form a novel monophyletic clade within the Melampsora genus, with robust support demonstrated by a high Maximum likelihood bootstrap support (MLBS) value of 100% and a Bayesian posterior probability (BPP) of 1. This study enriches our understanding of the diversity and geographical distribution of Melampsora species that infect Hypericum plants in China.


Assuntos
Basidiomycota , Hypericum , Filogenia , Doenças das Plantas , Folhas de Planta , China , Hypericum/microbiologia , Hypericum/classificação , Doenças das Plantas/microbiologia , Folhas de Planta/microbiologia , Basidiomycota/classificação , Basidiomycota/genética , Basidiomycota/isolamento & purificação , DNA Fúngico/genética , Esporos Fúngicos
4.
World J Microbiol Biotechnol ; 40(11): 335, 2024 Oct 03.
Artigo em Inglês | MEDLINE | ID: mdl-39358571

RESUMO

This study analysed basidiomycetous yeasts isolated from the phylloplane of crops and spontaneous plants in Italian agroecosystems. A total of 25 species belonging to 17 genera were recognized by analysing 83 isolates from vineyards and orchards, that are not treated with synthetic fungicides, and adjacent natural areas. Rhodotorula graminis and Filobasidium magnum were the most frequent species but 13 others were represented by a single isolate (e.g., Buckleyzyma salicina, Pseudozyma prolifica, and Moniliella megachiliensis). Preliminary analysis of (GTG)5-PCR fingerprinting revealed high genetic intraspecific heterogeneity. All isolates were characterized by their production of extracellular hydrolytic enzymes and their sensitivity to six commercial fungicides used in Italy. The isolates displayed great variability in these phenotypic traits, which play an important role in the survival of yeast populations in agroecosystems. Most of them exhibited lipolytic, proteolytic, ß-glucosidase and pectinolytic activities, but only three (F. magnum, Kwoniella mangroviensis and Ps. prolifica) also had cellulolytic and amylolytic activity. Most isolates were sensitive to four fungicides, and one R. graminis isolate was resistant to all six. This heterogeneity was not related to the geographical origin of the isolates. The lack of selective factors (i.e. pesticide treatments) in the sampling fields and the presence of adjacent natural areas may have favored the maintenance of an elevated level of strain diversity. This study provides new information on phylloplane basidiomycetous yeasts in agroecosystems and opens the way to further investigations into the impact of agricultural practices on the microbial diversity of these natural habitats.


Assuntos
Basidiomycota , Itália , Basidiomycota/genética , Basidiomycota/isolamento & purificação , Basidiomycota/classificação , Fungicidas Industriais/farmacologia , Leveduras/isolamento & purificação , Leveduras/classificação , Leveduras/genética , Filogenia , Produtos Agrícolas/microbiologia , Variação Genética , DNA Fúngico/genética , Testes de Sensibilidade Microbiana , Biodiversidade
5.
Curr Microbiol ; 81(11): 390, 2024 Oct 05.
Artigo em Inglês | MEDLINE | ID: mdl-39367930

RESUMO

Auricularia cornea has become one of the most important cultivated mushrooms worldwide. Although not remarkably flavorful, Auricularia species are very versatile and rehydrate easily after drying, adding a unique and pleasing texture to the dishes. In this study, we collected, identified, and domesticated a wild strain of A. cornea from the Brazilian Atlantic Rainforest. The wild strain was evaluated for mycelial growth at different temperatures and substrates, biological efficiency, and nutritional composition. The temperature that best favored the A. cornea mycelium growth was 30 °C, and the substrate was sterile Eucalyptus sawdust. The highest biological efficiency value obtained was 106.90 ± 13.28%. Nutritional analysis showed that the produced wood ears contained 71.02% carbohydrates, 19.63% crude fiber, 11.59% crude protein, 10.19% crude fat, and 4.24% ash on dry matter basis. For the mineral content profile, the elements K and P were the most abundant. This is the first report on cultivation of a wild strain of A. cornea from Brazil.


Assuntos
Madeira , Brasil , Madeira/microbiologia , Basidiomycota/crescimento & desenvolvimento , Basidiomycota/classificação , Micélio/crescimento & desenvolvimento , Temperatura , Eucalyptus/microbiologia , Eucalyptus/crescimento & desenvolvimento , Floresta Úmida
6.
Int J Syst Evol Microbiol ; 74(10)2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39475715

RESUMO

A novel basidiomycete yeast species represented by strain NYNU 2211328 was isolated from a leaf of Akebia trifoliata collected from the Baotianman Nature Reserve in Henan Province, central China. Phylogenetic analysis of the D1/D2 domain of the large subunit rRNA gene and the internal transcribed spacer (ITS) region suggested that this strain is closely related to Naohidea sebacea CBS 8477, exhibiting the similarity values of 96.5% and 91.3% in the D1/D2 domain and the ITS region, respectively. Physiologically, the novel strain differs from N. sebacea in its ability to assimilate inulin, trehalose and d-arabinose, its inability to assimilate dl-lactate and its incapability of growth at 30 °C. Both phenotypic and phylogenetic analyses indicated that the isolated strain represents a novel species in the genus Naohidea, and the name Naohidea akebiae fa. sp. nov. (holotype: CICC 33584; MycoBank number: MB 855585) is proposed.


Assuntos
DNA Fúngico , DNA Espaçador Ribossômico , Filogenia , Folhas de Planta , Análise de Sequência de DNA , China , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Técnicas de Tipagem Micológica , Folhas de Planta/microbiologia , Basidiomycota/genética , Basidiomycota/classificação , Basidiomycota/isolamento & purificação
7.
Int J Mol Sci ; 25(17)2024 Sep 04.
Artigo em Inglês | MEDLINE | ID: mdl-39273542

RESUMO

Suillus is one of the most important genera of ectomycorrhizal fungi. As a model for studying host specificity, its molecular fragments and nuclear genome have been analyzed. However, its mitochondrial genome has not yet been reported. In this study, we assembled five mitogenomes of Suillus and analyzed and compared their basic characteristics. Owing to the large number of introns as well as intergenic regions, the mitogenomic lengths of species of Suillus were greater than those of other species of Boletales. We identified two main patterns of gene order arrangement in the members of the order Boletales. The Ka/Ks values of 15 protein-coding genes were <1 for the mitochondrial genes of 39 Boletales species, indicating their conserved evolution. Phylogenetic trees, reconstructed using the mitogenomes, indicated that the genus Suillus was monophyletic. Phylogenetic results based on the internal transcribed spacer region and mitogenome were used to confirm the distribution of Suillus placidus in China. The results showed that the mitogenome was superior in distinguishing species compared with a single molecular fragment. This is the first study to investigate the mitogenome of Suillus, enriching the mitogenome information and providing basic data for the phylogeny, resource conservation, and genetic diversity of this genus.


Assuntos
Ordem dos Genes , Genoma Mitocondrial , Filogenia , Basidiomycota/genética , Basidiomycota/classificação , Evolução Molecular
8.
Sci Rep ; 14(1): 21136, 2024 09 10.
Artigo em Inglês | MEDLINE | ID: mdl-39256414

RESUMO

The identification and classification of various phenotypic features of Auricularia cornea fruit bodies are crucial for quality grading and breeding efforts. The phenotypic features of Auricularia cornea fruit bodies encompass size, number, shape, color, pigmentation, and damage. These phenotypic features are distributed across various views of the fruit bodies, making the task of achieving both rapid and accurate identification and classification challenging. This paper proposes a novel multi-view multi-label fast network that integrates two different views of the Auricularia cornea fruiting body, enabling rapid and precise identification and classification of six phenotypic features simultaneously. Initially, a multi-view feature extraction model based on partial convolution was constructed. This model incorporates channel attention mechanisms to achieve rapid phenotypic feature extraction of the Auricularia cornea fruiting body. Subsequently, an efficient multi-task classifier was designed, based on class-specific residual attention, to ensure accurate classification of phenotypic features. Finally, task weights were dynamically adjusted based on heteroscedastic uncertainty, reducing the training complexity of the multi-task classification. The proposed network achieved a classification accuracy of 94.66% and an inference speed of 11.9 ms on an image dataset of dried Auricularia cornea fruiting bodies with three views and six labels. The results demonstrate that the proposed network can efficiently and accurately identify and classify all phenotypic features of Auricularia cornea.


Assuntos
Fenótipo , Basidiomycota/classificação , Basidiomycota/fisiologia , Carpóforos , Processamento de Imagem Assistida por Computador/métodos , Algoritmos , Redes Neurais de Computação
9.
Mycologia ; 116(5): 792-820, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39121366

RESUMO

Pseudohydnum, commonly known as cat's tongue mushrooms, is a monophyletic assemblage within Auriculariales, which encompasses species with gelatinous basidiomata, spathulate, flabellate, or shell-shaped pileus, hydnoid hymenophore, globose to ellipsoidal basidiospores, and longitudinally cruciate-septate basidia. According to the available literature, 16 species have been described in Pseudohydnum, mostly represented in temperate-boreal forests of the Northern Hemisphere. However, the limited morphological, molecular, and ecological information, especially from the Southern Hemisphere ecosystems, does not presently allow a reliable assessment of its taxonomic boundaries nor provide a complete picture of the species diversity in the genus. In an ongoing effort to examine specimens collected in dense and mixed ombrophilous forest fragments (Atlantic Rainforest domain) from Southeastern and Southern Brazil, additional taxa assigned to Pseudohydnum were identified. Four new species are recognized based mostly on characters of the pileus surface, stipe, hymenium, and basidiospores. Molecular phylogenetic analyses based on nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode), partial nuc rDNA 28S, and partial RNA polymerase II largest subunit (RPB1) sequences supported the description of these new taxa. Here, we propose Pseudohydnum brasiliense, P. brunneovelutinum, P. cupulisnymphae, and P. viridimontanum as new species. Morphological descriptions, line drawings, habitat photos, and comparisons with closely related taxa are provided. A dichotomous key for identification of currently known Southern Hemisphere Pseudohydnum species is presented.


Assuntos
Agaricales , DNA Fúngico , DNA Espaçador Ribossômico , Filogenia , Esporos Fúngicos , DNA Fúngico/genética , Brasil , DNA Espaçador Ribossômico/genética , Esporos Fúngicos/citologia , Esporos Fúngicos/classificação , Agaricales/classificação , Agaricales/genética , Agaricales/isolamento & purificação , Agaricales/citologia , Análise de Sequência de DNA , DNA Ribossômico/genética , Basidiomycota/classificação , Basidiomycota/genética , Basidiomycota/citologia , Basidiomycota/isolamento & purificação , RNA Ribossômico 28S/genética , Carpóforos/citologia , Florestas
10.
Int J Med Mushrooms ; 26(10): 9-18, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39171628

RESUMO

Antifungal and antibacterial activities of crude extracts of Phellinus extensus, Ph. gilvus, Ph. pachyphloeus, Ph. senex and Coltricia fragilissima were investigated on eleven species of bacteria and three fungal human pathogens. The minimum inhibitory concentration (MIC) was determined by the microdilution method. The results of this study reveal that for the eleven strains of bacteria tested, including Bacillus subtilis, Enterococcus faecalis, Staphylococcus aureus, S. epidermidis, Enterobacter cloacae, Klebsiella aerogenes, Mycobacterium smegmatis, Proteus vulgaris, Proteus mirabilis and Escherichia choli, the MIC of the crude extract of the four species of Phellinus as well as that of C. fragilissima ranged from 3.13 to 12.50 mg/mL. For the three strains of fungi tested including Candida albicans, Aspergillus ochraceus and A. fumigetus, the MIC of the crude extracts of the same four species of Phellinus as well as that of C. fragilissima ranged from 0.39 to 3.13 mg/mL. These data reveal that the antimicrobial activity of crude extracts of Phellinus and Coltricia species is stronger on pathogenic fungi than on bacteria. C. fragilissima being of the same family as Phellinus and having recorded the values of MIC eminently close to those of the latter may potentially be used for medicinal purposes like the investigated Phellinus species. Being highly represented in the sub-Saharan regions and owing to the above-mentioned results, these species could now be considered as part of the non-exhaustive list of medicinal mushrooms in these regions and may constitute a new source of natural molecules that may be more active than synthetic products against certain fungal and bacterial borne diseases.


Assuntos
Antibacterianos , Antifúngicos , Bactérias , Testes de Sensibilidade Microbiana , Camarões , Antibacterianos/farmacologia , Antibacterianos/química , Antifúngicos/farmacologia , Antifúngicos/isolamento & purificação , Antifúngicos/química , Bactérias/efeitos dos fármacos , Bactérias/classificação , República Democrática do Congo , Fungos/efeitos dos fármacos , Basidiomycota/química , Basidiomycota/classificação , Misturas Complexas/farmacologia , Misturas Complexas/química , Humanos
11.
Mycologia ; 116(5): 729-743, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38976842

RESUMO

Two new species, Chalciporus rubrostipitatus and Tylopilus purpureus, are proposed from India based on morphological and molecular data. Chalciporus rubrostipitatus is characterized by basidiomata having purplish red to reddish pileus with subtomentose to rugose surface, whitish pileal context, round to angular pores, and reddish orange to red stipe, which is pruinose toward the apex. Tylopilus purpureus produces basidiomata having a purple to vinaceous purple pileus, whitish pore surface that changes to reddish brown on bruising, and a minutely pubescent purplish stipe. Morphological descriptions and comparisons, taxonomic keys, and results of phylogenetic analyses using sequences of the ITS (internal transcribed spacer), 28S (28S rRNA), and RPB2 (second largest subunit of RNA polymerase II) gene regions are presented.


Assuntos
DNA Fúngico , DNA Espaçador Ribossômico , Filogenia , RNA Polimerase II , Índia , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , RNA Polimerase II/genética , RNA Ribossômico 28S/genética , Análise de Sequência de DNA , Esporos Fúngicos/citologia , Esporos Fúngicos/classificação , Dados de Sequência Molecular , Basidiomycota/classificação , Basidiomycota/genética , Basidiomycota/isolamento & purificação
12.
Appl Microbiol Biotechnol ; 108(1): 423, 2024 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-39037499

RESUMO

The Chinese medicinal fungi "Sanghuang" have been long recognized for their significant and valued medicinal properties, as documented in ancient medical literature. However, in traditional folk medicine, various macrofungi sharing similar appearance, habitat, and therapeutic effects with Sanghuang were erroneously used. These Sanghuang-like fungi mainly belong to the Porodaedalea, Phellinus, and Inonotus genera within the Hymenochaetaceae family. Despite the establishment of the Sanghuangporus genus and the identification of multiple species, the emerging taxonomic references based on morphological, ITS, and mycelial structural features have been inadequate to differentiate Sanghuangporus and Sanghuang-like fungi. To address this limitation, this study presents the first comparative and phylogenetic analysis of Sanghuang-related fungi based on mitogenomes. Our results show that Sanghuangporus species show marked convergence in mitochondrial genomic features and form a distinct monophyletic group based on phylogenetic analyses of five datasets. These results not only deepen our understanding of Sanghuang-like fungi but also offer novel insights into their mitochondrial composition and phylogeny, thereby providing new research tools for distinguishing members of the Sanghuangporus genus. KEY POINTS: • Sanghuangporus, Inonotus, and Porodaedalea are monophyly in sanghuang-like species. • Mitogenome-based analysis exhibits high resolution in sanghuang-like genus. • The mitogenomes provide strong evidence for reclassifying Phellinus gilvus S12 as Sanghuangporus vaninii.


Assuntos
Filogenia , Genoma Mitocondrial , Basidiomycota/genética , Basidiomycota/classificação , DNA Fúngico/genética , Medicina Tradicional Chinesa , Análise de Sequência de DNA
13.
mBio ; 15(8): e0142324, 2024 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-39012152

RESUMO

In terrestrial forested ecosystems, fungi may interact with trees in at least three distinct ways: (i) associated with roots as symbionts; (ii) as pathogens in roots, trunks, leaves, flowers, and fruits; or (iii) decomposing dead tree tissues on soil or even on dead tissues in living trees. Distinguishing the latter two nutrition modes is rather difficult in Hymenochaetaceae (Basidiomycota) species. Herein, we have used an integrative approach of comparative genomics, stable isotopes, host tree association, and bioclimatic data to investigate the lifestyle ecology of the scarcely known neotropical genus Phellinotus, focusing on the unique species Phellinotus piptadeniae. This species is strongly associated with living Piptadenia gonoacantha (Fabaceae) trees in the Atlantic Forest domain on a relatively high precipitation gradient. Phylogenomics resolved P. piptadeniae in a clade that also includes both plant pathogens and typical wood saprotrophs. Furthermore, both genome-predicted Carbohydrate-Active Enzymes (CAZy) and stable isotopes (δ13C and δ15N) revealed a rather flexible lifestyle for the species. Altogether, our findings suggest that P. piptadeniae has been undergoing a pathotrophic specialization in a particular tree species while maintaining all the metabolic repertoire of a wood saprothroph. IMPORTANCE: This is the first genomic description for Phellinotus piptadeniae. This basidiomycete is found across a broad range of climates and ecosystems in South America, including regions threatened by extensive agriculture. This fungus is also relevant considering its pathotrophic-saprotrophic association with Piptadenia goanocantha, which we began to understand with these new results that locate this species among biotrophic and necrotrophic fungi.


Assuntos
Genômica , Filogenia , Basidiomycota/genética , Basidiomycota/classificação , Fabaceae/microbiologia , Árvores/microbiologia , Doenças das Plantas/microbiologia , Isótopos de Carbono/análise , Genoma Fúngico , Isótopos de Nitrogênio/análise , Florestas
14.
J Microbiol Biotechnol ; 34(6): 1249-1259, 2024 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-38938004

RESUMO

It remains to be determined whether there is a geographical distribution pattern and phylogenetic signals for the Mycena strains with seed germination of the orchid plant Gastrodia elata. This study analyzed the community composition and phylogenetics of 72 Mycena strains associated with G. elata varieties (G. elata. f. glauca and G. elata. f. viridis) using multiple gene fragments (ITS+nLSU+SSU). We found that (1) these diverse Mycena phylogenetically belong to the Basidiospore amyloid group. (2) There is a phylogenetic signal of Mycena for germination of G. elata. Those strains phylogenetically close to M. abramsii, M. polygramma, and an unclassified Mycena had significantly higher germination rates than those to M. citrinomarginata. (3) The Mycena distribution depends on geographic site and G. elata variety. Both unclassified Mycena group 1 and the M. abramsii group were dominant for the two varieties of G. elata; in contrast, the M. citrinomarginata group was dominant in G. elata f. glauca but absent in G. elata f. viridis. Our results indicate that the community composition of numerous Mycena resources in the Zhaotong area varies by geographical location and G. elata variety. Importantly, our results also indicate that Mycena's phylogenetic status is correlated with its germination rate.


Assuntos
Gastrodia , Germinação , Filogenia , Gastrodia/microbiologia , Gastrodia/genética , DNA Fúngico/genética , Sementes/microbiologia , Sementes/crescimento & desenvolvimento , Basidiomycota/genética , Basidiomycota/classificação , Basidiomycota/fisiologia
15.
Mol Ecol Resour ; 24(6): e13983, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38840549

RESUMO

In the face of evolving agricultural practices and climate change, tools towards an integrated biovigilance platform to combat crop diseases, spore sampling, DNA diagnostics and predictive trajectory modelling were optimized. These tools revealed microbial dynamics and were validated by monitoring cereal rust fungal pathogens affecting wheat, oats, barley and rye across four growing seasons (2015-2018) in British Columbia and during the 2018 season in southern Alberta. ITS2 metabarcoding revealed disparity in aeromycobiota diversity and compositional structure across the Canadian Rocky Mountains, suggesting a barrier effect on air flow and pathogen dispersal. A novel bioinformatics classifier and curated cereal rust fungal ITS2 database, corroborated by real-time PCR, enhanced the precision of cereal rust fungal species identification. Random Forest modelling identified crop and land-use diversification as well as atmospheric pressure and moisture as key factors in rust distribution. As a valuable addition to explain observed differences and patterns in rust fungus distribution, trajectory HYSPLIT modelling tracked rust fungal urediniospores' northeastward dispersal from the Pacific Northwest towards southern British Columbia and Alberta, indicating multiple potential origins. Our Canadian case study exemplifies the power of an advanced biovigilance toolbox towards developing an early-warning system for farmers to detect and mitigate impending disease outbreaks.


Assuntos
Microbiologia do Ar , Basidiomycota , Doenças das Plantas , Doenças das Plantas/microbiologia , Basidiomycota/genética , Basidiomycota/classificação , Basidiomycota/isolamento & purificação , Colúmbia Britânica , Alberta , Grão Comestível/microbiologia , Micobioma/genética , Biologia Computacional/métodos , Código de Barras de DNA Taxonômico/métodos , Canadá
16.
World J Microbiol Biotechnol ; 40(8): 251, 2024 Jun 24.
Artigo em Inglês | MEDLINE | ID: mdl-38910228

RESUMO

Genetic diversity in Sclerotium rolfsii is useful for understanding its population structure, identifying different mycelial compatibility groups (MCGs), and developing targeted strategies for disease management in affected crops. In our study, a comprehensive genetic analysis was conducted on 50 isolates of S. rolfsii, collected from various geographic regions and host plants. Two specific genes, TEF1α and RPB2, were utilized to assess the genetic diversity and relationships among these isolates. Notably, out of 1225 pairings examined, only 154 exhibited a compatible reaction, while the majority displayed antagonistic reactions, resulting in the formation of a barrier zone. The isolates were grouped into 10 distinct MCGs. These MCGs were further characterized using genetic sequencing. TEF1α sequences distinguished the isolates into 17 distinct clusters, and RPB2 sequences classified them into 20 clusters. Some MCGs shared identical gene sequences within each gene, while others exhibited unique sequences. Intriguingly, when both TEF1α and RPB2 sequences were combined, all 10 MCGs were effectively differentiated, even those that appeared identical with single-gene analysis. This combined approach provided a comprehensive understanding of the genetic diversity and relationships among the S. rolfsii isolates, allowing for precise discrimination between different MCGs. The results shed light on the population structure and genetic variability within this plant pathogenic fungus, providing valuable insights for disease management and control strategies. This study highlights the significance of comprehending the varied virulence characteristics within S. rolfsii isolates, categorizing them into specific virulence groups based on disease severity index (DSI) values. The association with MCGs provides additional insights into the genetic underpinnings of virulence in this pathogen. Furthermore, the identification of geographical patterns in virulence implies the influence of region-specific factors, with potential implications for disease control and crop protection strategies.Please confirm if the author names are presented accurately and in the correct sequence (given name, middle name/initial, family name). Author 1 Given name: [G. M. Sandeep] Last name [Kumar]. Author 2 Given name: [Praveen Kumar] Last name [Singh]. Also, kindly confirm the details in the metadata are correct.I confirm that the given names are accurate and presented in the correct sequence.


Assuntos
Basidiomycota , Variação Genética , Tipagem de Sequências Multilocus , Filogenia , Doenças das Plantas , Doenças das Plantas/microbiologia , Basidiomycota/genética , Basidiomycota/isolamento & purificação , Basidiomycota/classificação , Micélio/genética , Proteínas Fúngicas/genética , DNA Fúngico/genética , Produtos Agrícolas/microbiologia
17.
Fungal Biol ; 128(4): 1815-1826, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38876534

RESUMO

Endophytic fungi, pivotal in facilitating plant co-evolution, significantly enhance plant growth, stress resistance, and environmental adaptability. Despite their importance, the spatial distribution of stem endophytic fungi (SEF) within host plants remains poorly characterized. Here, we employed high-throughput sequencing to conduct a comparative analysis of SEF communities in Mussaenda pubescens on a regional scale. Our findings reveal that whole-SEF communities were overwhelmingly dominated by members of the phylum Ascomycota, accounting for 85.9 %, followed by Basidiomycota at 13.9 %, and that alpha diversity within the whole-SEF community of M. pubescens remains relatively consistent across sampling sites. However, significant variation was observed within conditionally abundant taxa (CAT), conditionally rare or abundant taxa (CRAT), and conditionally rare taxa (CRT). Climatic factors emerged as the primary influence on SEF community distribution, followed by spatial distance and stem chemical properties. Neutral community modeling results suggested that both stochastic and deterministic processes play a role in shaping whole-SEF communities, with deterministic processes having a stronger influence on CRT subcommunities. Furthermore, the CRT co-occurrence network exhibited a more complex structure, characterized by higher values of network betweenness and degree relative to CAT and CRAT subcommunities. These findings enhance our understanding of community assembly and ecological interactions between stem fungal endophytes, presenting opportunities for harnessing fungal resources for the benefit of humanity.


Assuntos
Endófitos , Caules de Planta , Endófitos/classificação , Endófitos/isolamento & purificação , Endófitos/genética , Caules de Planta/microbiologia , Ascomicetos/classificação , Ascomicetos/genética , Ascomicetos/isolamento & purificação , Fungos/classificação , Fungos/isolamento & purificação , Fungos/genética , Sequenciamento de Nucleotídeos em Larga Escala , Basidiomycota/classificação , Basidiomycota/genética , Basidiomycota/isolamento & purificação , Biodiversidade
18.
Mycologia ; 116(4): 601-620, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38847769

RESUMO

Three novel species of the genus Leucocoprinus, named Lc. cinnamomeodiscus, Lc. dahranwalanus, and Lc. iqbalii, are described from unexplored regions of southern Punjab, Pakistan, based on comprehensive analyses of morphoanatomical characteristics and molecular phylogenetic data. We provide illustrations of freshly collected basidiomata and detailed line drawings highlighting key anatomical features. The molecular phylogenetic analyses, which are based on the internal transcribed spacer (ITS) region and combined ITS-28S sequences, consistently position these newly described species within the genus Leucocoprinus. Additionally, this study also introduces new taxonomic combinations for previously reported Leucoagaricus species.


Assuntos
DNA Fúngico , DNA Espaçador Ribossômico , Filogenia , Paquistão , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Análise de Sequência de DNA , Esporos Fúngicos/citologia , Basidiomycota/genética , Basidiomycota/classificação , RNA Ribossômico 28S/genética , Biodiversidade
19.
J Microbiol ; 62(6): 429-447, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38753127

RESUMO

Hymenochaetales Oberw. is an order classified in Basidiomycota of Fungi, and species in this order display notable diversity. They exhibit various fruiting body shapes, including clavarioid, effused-reflexed, and resupinate basidiomes. Few mycorrhizal species have been reported in Hymenochaetales, but wood-decaying species dominate the order. Hymenochaetaceae Imazeki & Toki and Schizoporaceae Jülich are the most species-rich families within Hymenochaetales, and most species in the Republic of Korea belong to these two families. As such, current taxonomic classification and nomenclature are not reflected upon species in the remaining Hymenochaetales families. For this study, a multifaceted morphological and multigenetic marker-based phylogenetic investigation was conducted to, firstly, comprehensively identify understudied Hymenochaetales specimens in Korea and, secondly, reflect the updates on the species classification. Five genetic markers were assessed for the phylogenetic analysis: nuclear small subunit ribosomal DNA (nSSU), internal transcribed spacer (ITS), nuclear large subunit ribosomal DNA (nLSU), RNA polymerase II subunit 2 gene (RPB2), and translation elongation factor 1 gene (TEF1). The results from phylogenetic analysis supported 18 species classified under eight families (excluding Hymenochaetaceae and Schizoporaceae) in Korea. Species formerly placed in Rickenellaceae and Trichaptum sensu lato have been systematically revised based on recent taxonomic reconstructions. In addition, our findings revealed one new species, Rickenella umbelliformis, and identified five formerly nationally unreported species classified under five understudied families. Our findings contribute to a better understanding of Hymenochaetales diversity and highlight the need for continued research.


Assuntos
Basidiomycota , DNA Fúngico , Filogenia , República da Coreia , DNA Fúngico/genética , Basidiomycota/genética , Basidiomycota/classificação , DNA Espaçador Ribossômico/genética , Análise de Sequência de DNA , DNA Ribossômico/genética , Fator 1 de Elongação de Peptídeos/genética
20.
Braz J Microbiol ; 55(3): 2839-2844, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-38743246

RESUMO

Hemileia vastatrix, causal agent of coffee leaf rust (CLR), is an aggressive pathogen of coffee plants worldwide. Conventional fungicides play a major role in the suppression of this disease, but a recent shift toward eco-friendly farming practices has occurred and additional novel, effective, and sustainable strategies for CLR control are needed. Naturally occurring fungal antagonists could be well-positioned to meet this demand, but these fungi need to be isolated and tested for efficacy to identify organisms with potential. In this study, a survey of fungi associated with CLR lesions in four districts of Hawai'i Island, HI, USA (Kona, Ka'u, Hamakua, and Hilo) was conducted. Coffee leaves infected with CLR were collected from 22 locations and over 600 lesions were plated on ½ APDA and CTC 4T media. DNA was extracted from purified isolates and the internal transcribed spacer region (ITS) was sequenced and analyzed by BLASTn. In total, 194 isolates comprising 50 taxa were recovered. Several of the genera are known antagonists of CLR or other plant pathogens, including Simplicillium, Akanthomyces, Cladosporium, Fusarium, and Clonostachys. The wide diversity of fungi associated with CLR lesions provide a wealth of possibilities for identifying potential CLR antagonists that could serve as a valuable tool for coffee farmers as part of an integrated pest management plan.


Assuntos
Coffea , Doenças das Plantas , Folhas de Planta , Coffea/microbiologia , Havaí , Doenças das Plantas/microbiologia , Doenças das Plantas/prevenção & controle , Folhas de Planta/microbiologia , Fungos/classificação , Fungos/isolamento & purificação , Fungos/genética , Fungos/efeitos dos fármacos , Basidiomycota/isolamento & purificação , Basidiomycota/genética , Basidiomycota/classificação , Antibiose
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