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1.
Arch Microbiol ; 206(7): 335, 2024 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-38953983

RESUMO

Salmonella is considered as one of the most common zoonotic /foodborne pathogens in the world. The application of bacteriophages as novel antibacterial agents in food substrates has become an emerging strategy. Bacteriophages have the potential to control Salmonella contamination.We have isolated and characterized a broad-spectrum Salmonella phage, SP154, which can lyse 9 serotypes, including S. Enteritidis, S. Typhimurium, S. Pullorum, S. Arizonae, S. Dublin, S. Cholerasuis, S. Chester, S. 1, 4, [5], 12: i: -, and S. Derby, accounting for 81.9% of 144 isolates. SP154 showed a short latent period (40 min) and a high burst size (with the first rapid burst size at 107 PFUs/cell and the second rapid burst size at approximately 40 PFUs/cell). Furthermore, SP154 activity has higher survival rates across various environmental conditions, including pH 4.0-12.0 and temperatures ranging from 4 to 50 °C for 60 min, making it suitable for diverse food processing and storage applications. Significant reductions in live Salmonella were observed in different foods matrices such as milk and chicken meat, with a decrease of up to 1.9 log10 CFU/mL in milk contamination and a 1 log10 CFU/mL reduction in chicken meat. Whole genome sequencing analysis revealed that SP154 belongs to the genus Ithacavirus, subfamily Humphriesvirinae, within the family Schitoviridae. Phylogenetic analysis based on the terminase large subunit supported this classification, although an alternate tree using the tail spike protein gene suggested affiliation with the genus Kuttervirus, underscoring the limitations of relying on a single gene for phylogenetic inference. Importantly, no virulence or antibiotic resistance genes were detected in SP154. Our research highlights the potential of using SP154 for biocontrol of Salmonella in the food industry.


Assuntos
Microbiologia de Alimentos , Genoma Viral , Fagos de Salmonella , Salmonella , Sequenciamento Completo do Genoma , Fagos de Salmonella/genética , Fagos de Salmonella/isolamento & purificação , Fagos de Salmonella/classificação , Fagos de Salmonella/fisiologia , Animais , Salmonella/virologia , Salmonella/genética , Salmonella/classificação , Salmonella/isolamento & purificação , Galinhas , Leite/microbiologia , Leite/virologia , Carne/microbiologia , Carne/virologia , Filogenia
2.
Virology ; 596: 110101, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38754335

RESUMO

This study characterizes a newly isolated Demerecviridae phage, named vB_SalS_PSa2, belonging to the phage T5 group. The main variations between vB_SalS_PSa2 and T5 concern structural proteins related to morphology and host recognition. vB_SalS_PSa2 is infective to 19 out of the 25 tested Salmonella enterica (including the rare "Sendai" and "Equine" serotypes) and Escherichia coli isolates, most of them being multidrug resistant. vB_SalS_PSa2 displayed good thermal stability (4-60 °C) and broad pH stability (4.0-12.0). It also exhibited antibacterial activity against S. enterica sv. Paratyphi A Enb50 at 4 °C in milk during the whole tested period (5 d), and for 3-6 h at both 25 and 37 °C. Furthermore, vB_SalS_PSa2 was able to inhibit biofilm formation and to show degradation activity on mature biofilms of E. coli K12 and S. enterica sv. Paratyphi Enb50 in both LB and milk. Altogether, these results indicate that phage vB_SalS_PSa2 is a valuable candidate for controlling foodborne S. enterica and E. coli pathogens.


Assuntos
Escherichia coli , Salmonella enterica , Salmonella enterica/virologia , Escherichia coli/virologia , Leite/virologia , Animais , Microbiologia de Alimentos , Genoma Viral , Biofilmes/crescimento & desenvolvimento , Fagos de Salmonella/fisiologia , Fagos de Salmonella/isolamento & purificação , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Bacteriófagos/fisiologia , Bacteriófagos/genética , Bacteriófagos/classificação , Bacteriófagos/isolamento & purificação , Concentração de Íons de Hidrogênio , Filogenia , Especificidade de Hospedeiro
3.
Microb Genom ; 10(5)2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38717818

RESUMO

Evidence is accumulating in the literature that the horizontal spread of antimicrobial resistance (AMR) genes mediated by bacteriophages and bacteriophage-like plasmid (phage-plasmid) elements is much more common than previously envisioned. For instance, we recently identified and characterized a circular P1-like phage-plasmid harbouring a bla CTX-M-15 gene conferring extended-spectrum beta-lactamase (ESBL) resistance in Salmonella enterica serovar Typhi. As the prevalence and epidemiological relevance of such mechanisms has never been systematically assessed in Enterobacterales, in this study we carried out a follow-up retrospective analysis of UK Salmonella isolates previously sequenced as part of routine surveillance protocols between 2016 and 2021. Using a high-throughput bioinformatics pipeline we screened 47 784 isolates for the presence of the P1 lytic replication gene repL, identifying 226 positive isolates from 25 serovars and demonstrating that phage-plasmid elements are more frequent than previously thought. The affinity for phage-plasmids appears highly serovar-dependent, with several serovars being more likely hosts than others; most of the positive isolates (170/226) belonged to S. Typhimurium ST34 and ST19. The phage-plasmids ranged between 85.8 and 98.2 kb in size, with an average length of 92.1 kb; detailed analysis indicated a high amount of diversity in gene content and genomic architecture. In total, 132 phage-plasmids had the p0111 plasmid replication type, and 94 the IncY type; phylogenetic analysis indicated that both horizontal and vertical gene transmission mechanisms are likely to be involved in phage-plasmid propagation. Finally, phage-plasmids were present in isolates that were resistant and non-resistant to antimicrobials. In addition to providing a first comprehensive view of the presence of phage-plasmids in Salmonella, our work highlights the need for a better surveillance and understanding of phage-plasmids as AMR carriers, especially through their characterization with long-read sequencing.


Assuntos
Plasmídeos , Salmonella enterica , Sorogrupo , Plasmídeos/genética , Salmonella enterica/virologia , Salmonella enterica/genética , Infecções por Salmonella/microbiologia , Bacteriófagos/genética , Bacteriófagos/classificação , Fagos de Salmonella/genética , Fagos de Salmonella/classificação , Humanos , Filogenia , Transferência Genética Horizontal , Estudos Retrospectivos
4.
Diagn Microbiol Infect Dis ; 109(3): 116305, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38643675

RESUMO

In this study, we present the complete annotated genome of a novel Salmonella phage, vB_SenS_ST1UNAM. This phage exhibits lytic activity against several Salmonella enterica serotypes, such as S. Typhi, S. Enteritidis, and S. Typhimurium strains, which are major causes of foodborne illness worldwide. Its genome consists of a linear, double-stranded DNA of 47,877 bp with an average G+C content of 46.6%. A total of 85 coding regions (CDS) were predicted, of which only 43 CDS were functionally assigned. Neither genes involved in the regulation of lysogeny, nor antibiotic resistance genes were identified. This phage harbors a lytic cassette that encodes a type II-holin and a Rz/Rz1-like spanin complex, along with a restriction-modification evasion system and a depolymerase that degrades Salmonella exopolysaccharide. Moreover, the comparative analysis with closely related phage genomes revealed that vB_SenS_ST1UNAM represents a novel genus, for which the genus "Gomezvirus" within the subfamily "ST1UNAM-like" is proposed.


Assuntos
Composição de Bases , Genoma Viral , Fagos de Salmonella , Salmonella enterica , Sorogrupo , Genoma Viral/genética , Salmonella enterica/virologia , Salmonella enterica/genética , Salmonella enterica/efeitos dos fármacos , Fagos de Salmonella/genética , Fagos de Salmonella/classificação , DNA Viral/genética , Análise de Sequência de DNA , Genômica/métodos , Fases de Leitura Aberta
5.
Viruses ; 14(2)2022 01 25.
Artigo em Inglês | MEDLINE | ID: mdl-35215834

RESUMO

Salmonella Typhimurium, a foodborne pathogen, is a major concern for food safety. Its MDR serovars of animal origin pose a serious threat to the human population. Phage therapy can be an alternative for the treatment of such MDR Salmonella serovars. In this study, we report on detailed genome analyses of a novel Salmonella phage (Salmonella-Phage-SSBI34) and evaluate its therapeutic potential. The phage was evaluated for latent time, burst size, host range, and bacterial growth reduction in liquid cultures. The phage stability was examined at various pH levels and temperatures. The genome analysis (141.095 Kb) indicated that its nucleotide sequence is novel, as it exhibited only 1-7% DNA coverage. The phage genome features 44% GC content, and 234 putative open reading frames were predicted. The genome was predicted to encode for 28 structural proteins and 40 enzymes related to nucleotide metabolism, DNA modification, and protein synthesis. Further, the genome features 11 tRNA genes for 10 different amino acids, indicating alternate codon usage, and hosts a unique hydrolase for bacterial lysis. This study provides new insights into the subfamily Vequintavirinae, of which SSBI34 may represent a new genus.


Assuntos
Myoviridae/genética , Fagos de Salmonella/genética , Salmonella typhimurium/virologia , Animais , Bacteriólise , Agentes de Controle Biológico , Genoma Viral , Especificidade de Hospedeiro , Myoviridae/classificação , Myoviridae/isolamento & purificação , Myoviridae/fisiologia , Fases de Leitura Aberta , Terapia por Fagos , Filogenia , Aves Domésticas/microbiologia , Infecções por Salmonella/terapia , Fagos de Salmonella/classificação , Fagos de Salmonella/isolamento & purificação , Fagos de Salmonella/fisiologia , Salmonella typhimurium/isolamento & purificação
6.
PLoS One ; 17(1): e0262946, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35073376

RESUMO

Salmonella is a common foodborne pathogen, especially in meat and meat products. Lytic phages are promising alternatives to conventional methods for Salmonella biocontrol in food and food processing. In this study, a virulent bacteriophage (PSDA-2) against Salmonella enterica serovar Typhimurium was isolated from the sewage and it was found that PSDA-2 belongs to Cornellvirus genus of Siphoviridae family by morphological and phylogenetic analysis. Based on the one-step growth curve, PSDA-2 has a short latent period (10 min) and a high burst size (120 PFU/cell). The stability test in vitro reveals that PSDA-2 is stable at 30-70°C and pH 3-10. Bioinformatics analysis show that PSDA-2 genome consists of 40,062 bp with a GC content of 50.21% and encodes 63 open reading frames (ORFs); no tRNA genes, lysogenic genes, drug resistance genes and virulence genes were identified in the genome. Moreover, the capacity for PSDA-2 to control Salmonella Typhimurium in chilled mutton was investigated. The results show that incubation of PSDA-2 at 4°C reduced recoverable Salmonella by 1.7 log CFU/mL and 2.1 log CFU/mL at multiplicity of infection (MOI) of 100 and 10,000 respectively, as relative to the phage-excluded control. The features of phage PSDA-2 suggest that it has the potential to be an agent to control Salmonella.


Assuntos
Microbiologia de Alimentos , Genoma Viral , Carne/microbiologia , Fagos de Salmonella , Salmonella typhimurium/virologia , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Fagos de Salmonella/isolamento & purificação
7.
Viruses ; 13(8)2021 08 17.
Artigo em Inglês | MEDLINE | ID: mdl-34452490

RESUMO

Salmonella is a widely distributed foodborne pathogen that is a serious threat to human health. The accelerated development of drug resistance and the increased demand for natural foods invoke new biocontrol agents to limit contamination by multidrug-resistant (MDR) Salmonella strains. In this study, a lytic Salmonella phage named D10 was characterized at the biological and genomic levels. D10 possesses a short latent period (10 min) and a large burst size (163 PFU/cell), as well as adequate stability under a range of pH conditions and moderate thermal tolerance. D10 effectively lysed different MDR Salmonella serovars and repressed their dynamic growth in the medium. Genomic analysis disclosed that D10 is a new member of the Siphoviridae family and lacks the genes implicated in lysogeny, pathogenicity, or antibiotic resistance. A three-ingredient phage cocktail was then developed by mixing D10 with previously identified myovirus D1-2 and podovirus Pu20. The cocktail significantly reduced the count of MDR strains in liquid eggs, regardless of the temperature applied (4 and 25 °C). These results suggest that phage D10 is a promising tool to prevent food contamination by MDR Salmonella.


Assuntos
Farmacorresistência Bacteriana Múltipla , Microbiologia de Alimentos/métodos , Genoma Viral , Fagos de Salmonella/genética , Salmonella typhimurium/virologia , Animais , Agentes de Controle Biológico/isolamento & purificação , Contaminação de Alimentos/prevenção & controle , Inocuidade dos Alimentos/métodos , Especificidade de Hospedeiro , Humanos , Aves Domésticas/virologia , Fagos de Salmonella/classificação , Fagos de Salmonella/crescimento & desenvolvimento , Fagos de Salmonella/patogenicidade , Sorogrupo , Siphoviridae/classificação , Siphoviridae/genética , Siphoviridae/isolamento & purificação
8.
Arch Microbiol ; 203(4): 1345-1356, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33386871

RESUMO

This work describes the characterization and genome annotation of Salmonella phage vB_SalM_8-19 (referred to as 8-19) isolated from sewage samples collected in a pig farm in Jilin, China. This phage was capable of infecting 60% Salmonella strains in our lab stock. The genome of phage 8-19 is composed of linear double-stranded DNA that is 52,648 bp in length with a G + C content of 46.02%; containing 74 ORFs and no tRNA genes. In October 2019, phylogenetic analyses indicated that phage 8-19 might belong to a novel cluster among the other similar phages which have not been specifically classified within some new genus in family Myoviridae. Recently, the International Committee on Taxonomy of Viruses (ICTV) defined phage 8-19 and its related phages as genus Rosemountvirus, family Myoviridae. This new genus, known as Rosemountvirus, is rarely reported in the literature.


Assuntos
Genoma Viral , Myoviridae/genética , Fagos de Salmonella/genética , Animais , Composição de Bases , China , Myoviridae/classificação , Myoviridae/isolamento & purificação , Fases de Leitura Aberta , Filogenia , Fagos de Salmonella/classificação , Fagos de Salmonella/isolamento & purificação , Esgotos/virologia , Suínos
9.
Food Microbiol ; 92: 103586, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32950171

RESUMO

Salmonella is one of the most common agents of foodborne disease worldwide. As natural alternatives to traditional antimicrobial agents, bacteriophages (phages) are emerging as highly effective biocontrol agents against Salmonella and other foodborne bacteria. Due to the high diversity within the Salmonella genus and emergence of drug resistant strains, improved efforts are necessary to find broad range and strictly lytic Salmonella phages for use in food biocontrol. Here, we describe the isolation and characterization of two Salmonella phages: ST-W77 isolated on S. Typhimurium and SE-W109 isolated on S. Enteritidis with extraordinary Salmonella specificity. Whole genome sequencing identified ST-W77 as a Myovirus within the Viunalikevirus genus and SE-W109 as a Siphovirus within the Jerseylikevirus genus. Infectivity studies using a panel of S. Typhimurium cell wall mutants revealed both phages require the lipopolysaccharide O-antigen, with SE-W109 also recognizing the flagella, during infection of Salmonella. A combination of both phages was capable of prolonged (one-week) antibacterial activity when added to milk or chicken meat contaminated with Salmonella. Due to their broad host ranges, strictly lytic lifestyles and lack of lysogeny-related genes or virulence genes in their genomes, ST-W77 and SE-W109 are ideal phages for further development as Salmonella biocontrol agents for food production.


Assuntos
Myoviridae/isolamento & purificação , Fagos de Salmonella/isolamento & purificação , Siphoviridae/isolamento & purificação , Animais , Galinhas , Microbiologia de Alimentos , Genoma Viral , Especificidade de Hospedeiro , Carne/microbiologia , Leite/microbiologia , Myoviridae/classificação , Myoviridae/genética , Myoviridae/fisiologia , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Fagos de Salmonella/fisiologia , Salmonella typhimurium/virologia , Siphoviridae/classificação , Siphoviridae/genética , Siphoviridae/fisiologia , Tailândia , Proteínas Virais/genética , Proteínas Virais/metabolismo
10.
Viral Immunol ; 33(7): 521-529, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-32397917

RESUMO

Salmonella is among the most serious of foodborne pathogens worldwide and distributed widely in the natural environment; in addition, it has caused severe medical problems and foodborne diseases. Bacterial biofilm was the multicellular community of microorganisms that attached to nonbiological and biological surfaces. Phages and their derivatives are ideal candidates for replacing and compensating antibiotic resistance problems in the future. In this study, a virulent phage of KM15 was isolated from pig slaughterhouse sump samples in Kunming, China. It belonged to the Siphoviridae family, and optimal growth temperature was 42°C, the pH of optimal preservation buffer was 6-7, optimal multiplicity of infection was 0.0001, and the genome size was 41,869 bp. The Salmonella paratyphi A and Salmonella paratyphi B have a broad spectrum of antibiotic resistance and were isolated from clinical patients in the First People's Hospital of Yunnan Province; fortunately, most of them can be lysed by phage KM15. Collaboration of phage KM15 and kanamycin sulfate has a better antibiofilm effect than KM15 and kanamycin sulfate alone, in low-concentration bacterial culture; KM15 has better antibiofilm effect than kanamycin sulfate in high-concentration bacterial culture. The data of this study provided a strong evidence of application of phage to reduce the growth of Salmonella biofilm, which was important for public health.


Assuntos
Biofilmes/efeitos dos fármacos , Canamicina/farmacologia , Fagos de Salmonella/classificação , Fagos de Salmonella/isolamento & purificação , Salmonella paratyphi A/virologia , Matadouros , Animais , Antibacterianos/farmacologia , China , DNA Viral , Farmacorresistência Bacteriana Múltipla , Genoma Viral , Humanos , Febre Paratifoide/tratamento farmacológico , Febre Paratifoide/microbiologia , Salmonella paratyphi A/efeitos dos fármacos , Siphoviridae/classificação , Siphoviridae/isolamento & purificação , Siphoviridae/fisiologia , Suínos
11.
Curr Microbiol ; 77(7): 1308-1315, 2020 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-32086533

RESUMO

Salmonella is a significant food-borne pathogen that infects a large number of people worldwide. In this study, a lytic bacteriophage vB_SenS_SE1 capable of infecting Salmonella is isolated from municipal wastewater in Beijing, and its biological and genomic features are analyzed. Transmission electron micrograph shows that vB_SenS_SE1 is likely a Siphoviridae virus, with an icosahedral head and a long non-contracted tail. The stability test in vitro reveals that it is stable at 4-50 °C and pH 4-12. Based on the one-step growth curve, vB_SenS_SE1 has a 60-min exponential phase and a low burst size (19 PFU per cell). Bioinformatics analysis reveals that vB_SenS_SE1 consists of a circular, double-stranded DNA molecule of 40,987 bp with a GC content of 51.2%. Its genome carries 63 predicted open reading frames (orfs), with 22 orfs encoding known proteins. Phylogenetic analysis of the large terminase subunit shows that vB_SenS_SE1 exhibits strong homology to Salmonella phage St161, St162, VSiP, and FSL SP-031. The CoreGenes analysis shows that it is a member of the virus genus Cornellvirus. The features of phage vB_SenS_SE1 suggest that it has the potential to be an agent to control Salmonella.


Assuntos
Genoma Viral/genética , Fagos de Salmonella , Composição de Bases/genética , Pequim , DNA Viral/química , DNA Viral/genética , Filogenia , Salmonella/virologia , Fagos de Salmonella/química , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Siphoviridae/química , Siphoviridae/classificação , Siphoviridae/genética , Águas Residuárias
12.
J Food Sci ; 85(3): 526-534, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32043599

RESUMO

Chicken breast meat is considered as the main source of Salmonella infection in humans. The aim of this study was to isolate lytic bacteriophages specific for Salmonella enterica serovars Enteritidis and examine their efficacy in a cocktail for the biocontrol of Salmonella spp. in raw chicken breast meat. Four lytic phages belonging to the Myoviridae and Siphoviridae families were isolated from a river proximate to a duck farm. They exhibited broad lytic activities against 11 strains of S. Enteritidis, 11 strains of S. Typhimurium, and one each of S. Paratyphi A, S. San Diego, and S. Typhi. The phages were determined to be stable, exhibited similar degrees of resistance to heat and pH, and had latent periods ranging from 5 to 30 min. In addition, the phage particles were 100% adsorbed within 18 to 40 min. Viable cell counts of bacteria were significantly reduced in raw chicken breast samples (P < 0.05) when treated with a cocktail of all four bacteriophages at 4 °C for 7 days (multiplicities of infection were from 104 to 106 ). These results indicate the potential efficacy of the bacteriophage cocktail as a biological agent against S. Enteritidis in raw chicken breast meat. PRACTICAL APPLICATION: Our findings demonstrate that the phages could be effective in reducing the viability of Salmonella spp. bacteria in chicken breast meat. Therefore, the phage cocktail is a potential bactericidal agent for the biocontrol of Salmonella spp. in raw chicken breast meat and could be used use in various poultry industries in the future.


Assuntos
Conservação de Alimentos/métodos , Carne/microbiologia , Myoviridae/isolamento & purificação , Fagos de Salmonella/isolamento & purificação , Salmonella enteritidis/virologia , Siphoviridae/isolamento & purificação , Animais , Galinhas , Patos , Microbiologia de Alimentos , Conservação de Alimentos/instrumentação , Myoviridae/classificação , Myoviridae/genética , Myoviridae/fisiologia , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Fagos de Salmonella/fisiologia , Salmonella enteritidis/crescimento & desenvolvimento , Siphoviridae/classificação , Siphoviridae/genética , Siphoviridae/fisiologia
13.
Viruses ; 11(9)2019 09 10.
Artigo em Inglês | MEDLINE | ID: mdl-31510005

RESUMO

Salmonella contamination in foods and their formation of biofilms in food processing facility are the primary bacterial cause of a significant number of foodborne outbreaks and infections. Broad lytic phages are promising alternatives to conventional technologies for pathogen biocontrol in food matrices and reducing biofilms. In this study, 42 Salmonella phages were isolated from environmentally-sourced water samples. We characterized the host range and lytic capacity of phages LPSTLL, LPST94 and LPST153 against Salmonella spp., and all showed a wide host range and broad lytic activity. Electron microscopy analysis indicated that LPSTLL, LPST94, and LPST153 belonged to the family of Siphoviridae, Ackermannviridae and Podoviridae, respectively. We established a phage cocktail containing three phages (LPSTLL, LPST94 and LPST153) that had broad spectrum to lyse diverse Salmonella serovars. A significant decrease was observed in Salmonella with a viable count of 3 log10 CFU in milk and chicken breast at either 25 °C or 4 °C. It was found that treatment with phage cocktail was able to significantly reduced biofilm on a 96-well microplate (44-63%) and on a stainless steel surface (5.23 to 6.42 log10). These findings demonstrated that the phage cocktail described in this study can be potentially used as a biological control agent against Salmonella in food products and also has the effect to reduce Salmonella formed biofilms.


Assuntos
Biofilmes , Microbiologia de Alimentos/métodos , Inocuidade dos Alimentos/métodos , Fagos de Salmonella/fisiologia , Salmonella enteritidis/virologia , Animais , Carga Bacteriana , Contagem de Colônia Microbiana , Genoma Viral , Especificidade de Hospedeiro , Leite/microbiologia , Fagos de Salmonella/classificação , Salmonella enteritidis/crescimento & desenvolvimento
14.
Viruses ; 11(9)2019 09 14.
Artigo em Inglês | MEDLINE | ID: mdl-31540091

RESUMO

Phages infecting members of the opportunistic human pathogen, Salmonella enterica, are widespread in natural environments and offer a potential source of agents that could be used for controlling populations of this bacterium; yet, relatively little is known about these phages. Here we describe the isolation and characterization of 45 phages of Salmonella enterica from disparate geographic locations within British Columbia, Canada. Host-range profiling revealed host-specific patterns of susceptibility and resistance, with several phages identified that have a broad-host range (i.e., able to lyse >40% of bacterial hosts tested). One phage in particular, SE13, is able to lyse 51 out of the 61 Salmonella strains tested. Comparative genomic analyses also revealed an abundance of sequence diversity in the sequenced phages. Alignment of the genomes grouped the phages into 12 clusters with three singletons. Phages within certain clusters exhibited extraordinarily high genome homology (>98% nucleotide identity), yet between clusters, genomes exhibited a span of diversity (<50% nucleotide identity). Alignment of the major capsid protein also supported the clustering pattern observed with alignment of the whole genomes. We further observed associations between genomic relatedness and the site of isolation, as well as genetic elements related to DNA metabolism and host virulence. Our data support the knowledge framework for phage diversity and phage-host interactions that are required for developing phage-based applications for various sectors, including biocontrol, detection and typing.


Assuntos
Variação Genética , Genoma Viral , Especificidade de Hospedeiro , Fagos de Salmonella/genética , Salmonella enterica/virologia , Sequenciamento Completo do Genoma , Colúmbia Britânica , DNA Viral/genética , Genômica , Geografia , Filogenia , Fagos de Salmonella/classificação , Análise de Sequência de DNA , Virulência
15.
Food Microbiol ; 84: 103237, 2019 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-31421774

RESUMO

Between 1991 and 2014 the per capita notification rate of salmonellosis in Australia increased from 31.9 to 69.7 cases per 100,000 people. Salmonella Typhimurium accounted for nearly half the human cases until the end of 2014. In this study, we used cluster analysis tools to compare S. Typhimurium isolates from a chicken-meat study with those reported to the National Enteric Pathogen Surveillance System (NEPSS) from the coincident human and non-human populations. There was limited phage type diversity within all populations and a lack of specificity of MLVA profiling within phage types. The chicken-meat study isolates were not significantly clustered with the human cases and at least 7 non-human sources, based on typing profiles (PT/MLVA combination), could be implicated as a source of human cases during the same period. In the absence of a strong surveillance system representative of all putative sources, MLVA and phage typing alone or in combination are insufficient to identify the source of human cases.


Assuntos
Tipagem de Bacteriófagos , Surtos de Doenças , Fagos de Salmonella/classificação , Salmonella typhimurium/classificação , Animais , Técnicas de Tipagem Bacteriana , Bovinos , Galinhas , Análise por Conglomerados , Humanos , Repetições Minissatélites , Aves Domésticas/microbiologia , Intoxicação Alimentar por Salmonella/diagnóstico , Intoxicação Alimentar por Salmonella/microbiologia , Infecções por Salmonella/diagnóstico , Infecções por Salmonella/microbiologia , Salmonella typhimurium/virologia
16.
J Basic Microbiol ; 59(10): 1049-1062, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31347183

RESUMO

The aim of this study was to identify and characterize the SE-P3, P16, P37, and P47 phages infecting Salmonella Enteritidis. Transmission electron microscopy analysis showed that the SE phages belonged to the Myoviridae or Siphoviridae family and had plaque sizes between 0.622 ± 0.027 and 1.630 ± 0.036 mm in diameter. sefC, pefA, spvC, sopE, and gipA virulent gene regions were absent in their genome and their calculated genome sizes were between 35.9 and 37.8 kbp. Sodium dodecyl sulfate polyacrylamide gel electrophoresis showed that the protein profiles of each phage were different. The SE phages had a short latent period (10-20 min), large burst size (76-356 PFU/cell), and a short burst time (25-35 min). The multiplicity of infection values and mutant frequency of the phages were 0.01-0.0001 and 10-7 , respectively. They were very infective against their host bacteria when applied at 20°C, 30°C, or 37°C and adsorbed to their host cells by 96.20-97.65% in the first 5 min of incubation, and also Ca2+ ions did not have a significant effect on their adsorption. The SE phages were resistant to wide pH ranges and high temperatures. These results indicate that the SE phages are good candidates as therapeutic and biocontrol agents against foodborne pathogenic S. Enteritidis.


Assuntos
Fagos de Salmonella/fisiologia , Salmonella enteritidis/virologia , Bacteriólise , Tamanho do Genoma , Genoma Viral , Temperatura Alta , Concentração de Íons de Hidrogênio , Taxa de Mutação , Myoviridae/classificação , Myoviridae/genética , Myoviridae/fisiologia , Myoviridae/ultraestrutura , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Fagos de Salmonella/ultraestrutura , Siphoviridae/classificação , Siphoviridae/genética , Siphoviridae/fisiologia , Siphoviridae/ultraestrutura , Especificidade da Espécie , Proteínas Virais/química , Proteínas Virais/metabolismo , Ligação Viral , Latência Viral
17.
Viruses ; 11(6)2019 06 05.
Artigo em Inglês | MEDLINE | ID: mdl-31195709

RESUMO

Despite a wealth of knowledge on Salmonella phages worldwide, little is known about poultry-associated Salmonella phages from Thailand. Here, we isolated 108 phages from Thai poultry farms that infect Salmonellaenterica serovar Typhimurium. Phages STm101 and STm118 were identified as temperate Siphoviridae phages. Genome sequencing and analyses revealed these phages share approximately 96% nucleotide sequence similarity to phage SPN19, a member of the Chi-like virus genus. PCR amplification of the gene encoding capsid protein E of the Chi-like phage was positive for 50% of phage isolates, suggesting a predominance of this phage type among the sampled poultry farms. In addition to the flagella, two phages required the lipopolysaccharide to infect and lyse Salmonella. Furthermore, phylogenomic analysis demonstrated that phages STm101 and STm118 formed a monophyletic clade with phages isolated from Western countries, but not from closer isolated phages from Korea. However, further investigation and more phage isolates are required to investigate possible causes for this geographic distribution.


Assuntos
Aves Domésticas/virologia , Fagos de Salmonella , Salmonella typhimurium/virologia , Siphoviridae , Animais , Fazendas , Genoma Viral , Filogenia , Filogeografia , Aves Domésticas/microbiologia , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Fagos de Salmonella/isolamento & purificação , Siphoviridae/classificação , Siphoviridae/genética , Siphoviridae/isolamento & purificação , Tailândia
18.
Virus Genes ; 55(4): 532-540, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31004278

RESUMO

A novel virulent bacteriophage vB_SpuP_Spp16 (hereafter designated Spp16) that infects Salmonella enterica serovar pullorum was isolated. Transmission electron microscopy showed that Spp16 possessed an isometric polyhedral head (60 nm in diameter) and a short tail (10 nm in length) belonging to the family Podoviridae. Its complete genome was determined to be 41,832 bp, with a 39.46% GC content by next-generation sequencing. The genome contains 53 proposed open reading frames that are involved in DNA replication and modification, transcriptional regulation, phage structural and packaging proteins and bacterial lysis. No transfer RNA genes were identified. The termini of genome were determined using our previously proposed termini identification method, which suggests that this phage has redundant termini with 421 bp direct terminal repeats. BLASTn analysis revealed the highest sequence similarity with Yersinia phage phi80-18, with a genome coverage of 33% and highest sequence identity of 69%. The phylogenetic analysis indicated that Spp16 forms a distinct branch of the subfamily Autographivirinae. Comparative genomics analysis showed that the phage Spp16 should be regarded as a new subcluster within the GAP227-like cluster in the Autographivirinae subfamily. The phage Spp16 has an obligate lytic life cycle demonstrated by experimental data and genomic analysis. These results suggest that Spp16 may be a proper candidate to control diseases caused by Salmonella enterica serovar pullorum.


Assuntos
Genoma Viral , Fagos de Salmonella/genética , Salmonella enterica/virologia , Filogenia , Fagos de Salmonella/classificação , Fagos de Salmonella/isolamento & purificação , Fagos de Salmonella/ultraestrutura , Especificidade da Espécie
19.
Arch Virol ; 164(5): 1475-1478, 2019 May.
Artigo em Inglês | MEDLINE | ID: mdl-30850860

RESUMO

Salmonella phages SenALZ1 and SenASZ3, two novel phages infecting Salmonella enterica, were isolated and analyzed. The genomes of these two phages consist of 154,811 and 157,630 base pairs (bp), with G+C contents of 44.56% and 44.74%, respectively. Fifty-nine of 199 open reading frames (ORFs) in the SenALZ1 genome, and 60 of the 204 in the SenASZ3 genome show similarity to reference sequences in the NCBI nr database that encode putative phage proteins with predicted functions. Based on the results of transmission electron microscopy (TEM) examination, complete genome sequence alignment, phylogenetic analysis, and gene annotation, we propose that these two phages are representative isolates of two new species of the genus Cba120virus, subfamily Cvivirinae, family Ackermannviridae.


Assuntos
Caudovirales , Fagos de Salmonella/isolamento & purificação , Salmonella enterica/virologia , Composição de Bases/genética , Sequência de Bases , Caudovirales/classificação , Caudovirales/genética , Caudovirales/isolamento & purificação , DNA Viral/genética , Genoma Viral/genética , Microscopia Eletrônica de Transmissão , Fases de Leitura Aberta/genética , Filogenia , Rios/virologia , Fagos de Salmonella/classificação , Fagos de Salmonella/genética , Análise de Sequência de DNA
20.
J Microbiol ; 56(12): 917-925, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30361974

RESUMO

In this study, we sought to isolate Salmonella Enteritidis-specific lytic bacteriophages (phages), and we found a lytic phage that could lyse not only S. Enteritidis but also other Gramnegative foodborne pathogens. This lytic phage, SS3e, could lyse almost all tested Salmonella enterica serovars as well as other enteric pathogenic bacteria including Escherichia coli, Shigella sonnei, Enterobacter cloacae, and Serratia marcescens. This SS3e phage has an icosahedral head and a long tail, indicating belong to the Siphoviridae. The genome was 40,793 base pairs, containing 58 theoretically determined open reading frames (ORFs). Among the 58 ORFs, ORF49, and ORF25 showed high sequence similarity with tail spike protein and lysozyme-like protein of Salmonella phage SE2, respectively, which are critical proteins recognizing and lysing host bacteria. Unlike SE2 phage whose host restricted to Salmonella enterica serovars Enteritidis and Gallinarum, SS3e showed broader host specificity against Gram-negative enteric bacteria; thus, it could be a promising candidate for the phage utilization against various Gram-negative bacterial infection including foodborne pathogens.


Assuntos
Microbioma Gastrointestinal , Especificidade de Hospedeiro , Fagos de Salmonella/genética , Fagos de Salmonella/fisiologia , Salmonella enteritidis/virologia , Animais , República Democrática Popular da Coreia , Enterobacter cloacae/virologia , Enterobacteriaceae/virologia , Escherichia coli/virologia , Fazendas , Doenças Transmitidas por Alimentos/microbiologia , Genoma Viral , Fases de Leitura Aberta/genética , Filogenia , Aves Domésticas , Fagos de Salmonella/classificação , Fagos de Salmonella/isolamento & purificação , Salmonella enterica/virologia , Análise de Sequência de DNA , Esgotos/virologia , Shigella sonnei/efeitos dos fármacos
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