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1.
Nat Commun ; 15(1): 5866, 2024 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-38997249

RESUMO

The estuarine plastisphere, a novel ecological habitat in the Anthropocene, has garnered global concerns. Recent geochemical evidence has pointed out its potential role in influencing nitrogen biogeochemistry. However, the biogeochemical significance of the plastisphere and its mechanisms regulating nitrogen cycling remain elusive. Using 15N- and 13C-labelling coupled with metagenomics and metatranscriptomics, here we unveil that the plastisphere likely acts as an underappreciated nitrifying niche in estuarine ecosystems, exhibiting a 0.9 ~ 12-fold higher activity of bacteria-mediated nitrification compared to surrounding seawater and other biofilms (stone, wood and glass biofilms). The shift of active nitrifiers from O2-sensitive nitrifiers in the seawater to nitrifiers with versatile metabolisms in the plastisphere, combined with the potential interspecific cooperation of nitrifying substrate exchange observed among the plastisphere nitrifiers, collectively results in the unique nitrifying niche. Our findings highlight the plastisphere as an emerging nitrifying niche in estuarine environment, and deepen the mechanistic understanding of its contribution to marine biogeochemistry.


Assuntos
Bactérias , Biofilmes , Estuários , Nitrificação , Água do Mar , Água do Mar/microbiologia , Bactérias/metabolismo , Bactérias/genética , Biofilmes/crescimento & desenvolvimento , Ecossistema , Microbiota/fisiologia , Metagenômica , Filogenia , Ciclo do Nitrogênio , Nitrogênio/metabolismo , Isótopos de Nitrogênio/metabolismo
2.
Glob Chang Biol ; 30(7): e17410, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38978457

RESUMO

Forests are the largest carbon sink in terrestrial ecosystems, and the impact of nitrogen (N) deposition on this carbon sink depends on the fate of external N inputs. However, the patterns and driving factors of N retention in different forest compartments remain elusive. In this study, we synthesized 408 observations from global forest 15N tracer experiments to reveal the variation and underlying mechanisms of 15N retention in plants and soils. The results showed that the average total ecosystem 15N retention in global forests was 63.04 ± 1.23%, with the soil pool being the main N sink (45.76 ± 1.29%). Plants absorbed 17.28 ± 0.83% of 15N, with more allocated to leaves (5.83 ± 0.63%) and roots (5.84 ± 0.44%). In subtropical and tropical forests, 15N was mainly absorbed by plants and mineral soils, while the organic soil layer in temperate forests retained more 15N. Additionally, forests retained more N 15 H 4 + $$ {}^{15}\mathrm{N}{\mathrm{H}}_4^{+} $$ than N 15 O 3 - $$ {}^{15}\mathrm{N}{\mathrm{O}}_3^{-} $$ , primarily due to the stronger capacity of the organic soil layer to retain N 15 H 4 + $$ {}^{15}\mathrm{N}{\mathrm{H}}_4^{+} $$ . The mechanisms of 15N retention varied among ecosystem compartments, with total ecosystem 15N retention affected by N deposition. Plant 15N retention was influenced by vegetative and microbial nutrient demands, while soil 15N retention was regulated by climate factors and soil nutrient supply. Overall, this study emphasizes the importance of climate and nutrient supply and demand in regulating forest N retention and provides data to further explore the impacts of N deposition on forest carbon sequestration.


Assuntos
Florestas , Isótopos de Nitrogênio , Nitrogênio , Solo , Nitrogênio/análise , Nitrogênio/metabolismo , Solo/química , Isótopos de Nitrogênio/análise , Atmosfera/química , Sequestro de Carbono , Árvores/metabolismo , Folhas de Planta/metabolismo , Folhas de Planta/química
3.
Mar Environ Res ; 199: 106627, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38968803

RESUMO

DNA metabarcoding and stable isotope analysis have significantly advanced our understanding of marine trophic ecology, aiding systematic research on foraging habits and species conservation. In this study, we employed these methods to analyse faecal and blood samples, respectively, to compare the trophic ecology of two Red-billed Tropicbird (Phaethonaethereus; Linnaeus, 1758) colonies on Mexican islands in the Pacific. Trophic patterns among different breeding stages were also examined at both colonies. Dietary analysis reveals a preference for epipelagic fish, cephalopods, and small crustaceans, with variations between colonies and breeding stages. Isotopic values (δ15N and δ13C) align with DNA metabarcoding results, with wider niches during incubation stages. Differences in diet are linked to environmental conditions and trophic plasticity among breeding stages, influenced by changing physiological requirements and prey availability. Variations in dietary profiles reflect contrasting environmental conditions affecting local prey availability.


Assuntos
Código de Barras de DNA Taxonômico , Cadeia Alimentar , Animais , Isótopos de Carbono/análise , Dieta , Isótopos de Nitrogênio/análise , Aves/fisiologia , México
4.
Rapid Commun Mass Spectrom ; 38(18): e9860, 2024 Sep 30.
Artigo em Inglês | MEDLINE | ID: mdl-38989637

RESUMO

RATIONALE: Understanding the migration of marine animals is hindered by the limitations of traditional tracking methods. It is therefore crucial to develop alternative methods. Stable isotope-based tracking has proven useful for this task, although it requires detailed isoscapes in the focal area. Here, we present predator-based isoscapes of the coastal zone of the Patagonian Shelf Large Marine Ecosystem (PSLME), which offers a novel tool for geolocation. METHODS: Whole-blood samples from breeding Magellanic penguins nesting at 11 colonies were used to create δ15N and δ13C isoscapes. Isotopic values were assigned to random positions inside their corresponding foraging area. Spatial analysis and data interpolation resulted in δ15N and δ13C isoscapes for the coastal zone of the PSLME, which were validated through cross-validation. RESULTS: The isoscapes mean standard error ranged from 0.05 to 0.41 for δ15N and from 0.07 to 0.3 for δ13C, similar to the error range of the mass spectrometer used for measuring isotope ratios. Predictive surfaces reflected the latitudinal trends, with δ13C and δ15N values increasing northwards. δ13C values showed a strong latitudinal gradient, while δ15N values had two distinct domains, with higher values in the north. The error surface indicated the highest certainty within 130 km from the shore and within the reported Magellanic penguin foraging areas. CONCLUSIONS: Both isoscapes revealed strong spatial variation. The δ13C isoscape showed a latitudinal gradient, consistent with patterns in other oceans. The δ15N isoscape clearly separated northern and southern colonies, likely influenced by nitrogen sources. The error obtained fell within the measurement error ranges, adding credibility to the models.


Assuntos
Isótopos de Carbono , Isótopos de Nitrogênio , Spheniscidae , Animais , Spheniscidae/sangue , Isótopos de Nitrogênio/sangue , Isótopos de Nitrogênio/análise , Isótopos de Carbono/análise , Isótopos de Carbono/sangue , Espectrometria de Massas/métodos , Migração Animal , Ecossistema
5.
PLoS One ; 19(7): e0304089, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39037992

RESUMO

Aquatic food webs are spatially complex, potentially contributing to intraspecific variability in production pathway reliance of intermediate trophic level consumers. Variation in trophic reliance may be described by well-established trophic indicators, like stable isotope ratios (δ13C, δ15N), along with emerging trophic indicators, such as fatty acid composition. We evaluated stable isotope ratios and fatty acid profiles of European smelt (Osmerus eperlanus) among and within distinct regions of three large Swedish lakes (Hjälmaren, Mälaren, Vättern) which differed in trophic status. We expected that smelts in more oligotrophic lakes and regions would be characterized by distinct stable isotope signatures and fatty acid profiles, with particularly high polyunsaturated fatty acid (PUFA) relative levels. However, we acknowledge that frequent movement of smelts among regions may serve to spatially integrate their diet and lead to limited within-lake variation in stable isotope ratios and fatty acid composition. As expected, in comparison with more productive lakes (i.e., Hjälmaren and Mälaren), smelts from ultra-oligotrophic Vättern were characterized by low δ15N, high δ13C and high percent of a dominant PUFA, docosahexaenoic acid (DHA). Smelts from different regions of the morphometrically complex Mälaren displayed differential stable isotope ratios and fatty acid relative concentrations, which were consistent with within-lake differences in productivity and water residence times, suggesting that smelts in this lake forage locally within distinct regions. Finally, at the individual smelt level there were particularly strong and consistent associations between a well-established trophic indicator (δ13C) and percent DHA, suggesting that the relative concentration of this fatty acid may be a useful additional trophic indicator for smelt.


Assuntos
Isótopos de Carbono , Ácidos Graxos , Lagos , Isótopos de Nitrogênio , Animais , Ácidos Graxos/análise , Ácidos Graxos/metabolismo , Isótopos de Nitrogênio/análise , Isótopos de Carbono/análise , Cadeia Alimentar , Peixes/metabolismo , Suécia
6.
Philos Trans R Soc Lond B Biol Sci ; 379(1909): 20230167, 2024 Sep 09.
Artigo em Inglês | MEDLINE | ID: mdl-39034698

RESUMO

Fishing has significant trophodynamic impacts on marine communities, including reductions in the mean trophic position (TP) of the ecosystem resulting from a decrease in the abundance and size of species and individuals with high TPs. This study demonstrates the erosion of fish TP, an additional process that results in lower TP of individuals of a given size, which may exacerbate the effects of fishing on the food web. A stable isotope approach based on the tRophicPosition Bayesian method was used to quantify the TP of 12 target marine species at a given length, and compare their TP between fishery-restricted areas and trawled areas. The results show a difference in the TP of six benthic and apical nekto-benthic predators, which feed in the median at about 0.5 TP lower in trawled areas. It appears that current 'fishing down marine food webs' analyses may underestimate the trophic effects of fishing. Accounting for changes in trophodynamics of individuals at a given size is important to detect indirect effects through food web interactions. The application of a trawling ban may lead to the restoration of lost trophic structure; however, trophic changes may occur more slowly than changes in biomass. This article is part of the theme issue 'Connected interactions: enriching food web research by spatial and social interactions'.


Assuntos
Isótopos de Carbono , Pesqueiros , Peixes , Cadeia Alimentar , Animais , Peixes/fisiologia , Isótopos de Carbono/análise , Isótopos de Nitrogênio/análise , Teorema de Bayes
7.
BMC Ecol Evol ; 24(1): 90, 2024 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-38956464

RESUMO

BACKGROUND: Assessing the historical dynamics of key food web components is crucial to understand how climate change impacts the structure of Arctic marine ecosystems. Most retrospective stable isotopic studies to date assessed potential ecosystem shifts in the Arctic using vertebrate top predators and filter-feeding invertebrates as proxies. However, due to long life histories and specific ecologies, ecosystem shifts are not always detectable when using these taxa. Moreover, there are currently no retrospective stable isotopic studies on various other ecological and taxonomic groups of Arctic biota. To test whether climate-driven shifts in marine ecosystems are reflected in the ecology of short-living mesopredators, ontogenetic changes in stable isotope signatures in chitinous hard body structures were analysed in two abundant squids (Gonatus fabricii and Todarodes sagittatus) from the low latitude Arctic and adjacent waters, collected between 1844 and 2023. RESULTS: We detected a temporal increase in diet and habitat-use generalism (= opportunistic choice rather than specialization), trophic position and niche width in G. fabricii from the low latitude Arctic waters. These shifts in trophic ecology matched with the Atlantification of the Arctic ecosystems, which includes increased generalization of food webs and higher primary production, and the influx of boreal species from the North Atlantic as a result of climate change. The Atlantification is especially marked since the late 1990s/early 2000s. The temporal patterns we found in G. fabricii's trophic ecology were largely unreported in previous Arctic retrospective isotopic ecology studies. Accordingly, T. sagittatus that occur nowadays in the high latitude North Atlantic have a more generalist diet than in the XIXth century. CONCLUSIONS: Our results suggest that abundant opportunistic mesopredators with short life cycles (such as squids) are good candidates for retrospective ecology studies in the marine ecosystems, and to identify ecosystem shifts driven by climate change. Enhanced generalization of Arctic food webs is reflected in increased diet generalism and niche width in squids, while increased abundance of boreal piscivorous fishes is reflected in squids' increased trophic position. These findings support opportunism and adaptability in squids, which renders them as potential winners of short-term shifts in Arctic ecosystems.


Assuntos
Mudança Climática , Decapodiformes , Ecossistema , Cadeia Alimentar , Animais , Regiões Árticas , Mudança Climática/história , Isótopos de Carbono/análise , Isótopos de Nitrogênio/análise , Dieta/história
8.
Anal Bioanal Chem ; 416(18): 4071-4082, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38958703

RESUMO

The study of glycoproteomics presents a set of unique challenges, primarily due to the low abundance of glycopeptides and their intricate heterogeneity, which is specific to each site. Glycoproteins play a crucial role in numerous biological functions, including cell signaling, adhesion, and intercellular communication, and are increasingly recognized as vital markers in the diagnosis and study of various diseases. Consequently, a quantitative approach to glycopeptide research is essential. One effective strategy to address this need is the use of multiplex glycopeptide labeling. By harnessing the synergies of 15N metabolic labeling via the isotopic detection of amino sugars with glutamine (IDAWG) technique for glycan parts and tandem mass tag (TMT)pro labeling for peptide backbones, we have developed a method that allows for the accurate quantification and comparison of multiple samples simultaneously. The adoption of the liquid chromatography-synchronous precursor selection (LC-SPS-MS3) technique minimizes fragmentation interference, enhancing data reliability, as shown by a 97% TMT labeling efficiency. This method allows for detailed, high-throughput analysis of 32 diverse samples from 231BR cell lines, using both 14N and 15N glycopeptides at a 1:1 ratio. A key component of our methodology was the precise correction for isotope and TMTpro distortions, significantly improving quantification accuracy to less than 5% distortion. This breakthrough enhances the efficiency and accuracy of glycoproteomic studies, increasing our understanding of glycoproteins in health and disease. Its applicability to various cancer cell types sets a new standard in quantitative glycoproteomics, enabling deeper investigation into glycopeptide profiles.


Assuntos
Glicopeptídeos , Marcação por Isótopo , Isótopos de Nitrogênio , Espectrometria de Massas em Tandem , Glicopeptídeos/análise , Glicopeptídeos/metabolismo , Humanos , Isótopos de Nitrogênio/análise , Espectrometria de Massas em Tandem/métodos , Marcação por Isótopo/métodos , Proteômica/métodos , Linhagem Celular Tumoral , Cromatografia Líquida/métodos
9.
PLoS One ; 19(6): e0305089, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38923938

RESUMO

The volume of human carbon (δ13C) and nitrogen (δ15N) isotope data produced in archaeological research has increased markedly in recent years. However, knowledge of bone remodelling, its impact on isotope variation, and the temporal resolution of isotope data remains poorly understood. Varied remodelling rates mean different elements (e.g., femur and rib) produce different temporal signals but little research has examined intra-element variability. This study investigates human bone remodelling using osteon population density and the relationship with carbon and nitrogen isotope data at a high resolution, focusing on variation through femoral cross-sections, from periosteal to endosteal surfaces. Results demonstrate considerable differences in isotope values between cross-sectional segments of a single fragment, by up to 1.3‰ for carbon and 1.8‰ for nitrogen, illustrating the need for standardised sampling strategies. Remodelling also varies between bone sections, occurring predominantly within the endosteal portion, followed by the midcortical and periosteal. Therefore, the endosteal portion likely reflects a shorter period of life closer to the time of death, consistent with expectations. By contrast, the periosteal surface provides a longer average, though there were exceptions to this. Results revealed a weak negative correlation between osteon population density and δ15N or δ13C, confirming that remodelling has an effect on isotope values but is not the principal driver. However, a consistent elevation of δ15N and δ13C (0.5‰ average) was found between the endosteal and periosteal regions, which requires further investigation. These findings suggest that, with further research, there is potential for single bone fragments to reconstruct in-life dietary change and mobility, thus reducing destructive sampling.


Assuntos
Remodelação Óssea , Isótopos de Carbono , Fêmur , Isótopos de Nitrogênio , Humanos , Fêmur/anatomia & histologia , Fêmur/química , Fêmur/metabolismo , Remodelação Óssea/fisiologia , Isótopos de Carbono/análise , Isótopos de Nitrogênio/análise , Feminino , Masculino , Adulto , Pessoa de Meia-Idade
10.
New Phytol ; 243(4): 1312-1328, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38934095

RESUMO

Recent droughts have strongly impacted forest ecosystems and are projected to increase in frequency, intensity, and duration in the future together with continued warming. While evidence suggests that tree diversity can regulate drought impacts in natural forests, few studies examine whether mixed tree plantations are more resistant to the impacts of severe droughts. Using natural variations in leaf carbon (C) and nitrogen (N) isotopic ratios, that is δ13C and δ15N, as proxies for drought response, we analyzed the effects of tree species richness on the functional responses of tree plantations to the pan-European 2018 summer drought in seven European tree diversity experiments. We found that leaf δ13C decreased with increasing tree species richness, indicating less drought stress. This effect was not related to drought intensity, nor desiccation tolerance of the tree species. Leaf δ15N increased with drought intensity, indicating a shift toward more open N cycling as water availability diminishes. Additionally, drought intensity was observed to alter the influence of tree species richness on leaf δ15N from weakly negative under low drought intensity to weakly positive under high drought intensity. Overall, our findings suggest that dual leaf isotope analysis helps understand the interaction between drought, nutrients, and species richness.


Assuntos
Biodiversidade , Isótopos de Carbono , Secas , Isótopos de Nitrogênio , Folhas de Planta , Estações do Ano , Árvores , Folhas de Planta/fisiologia , Árvores/fisiologia , Isótopos de Carbono/análise , Europa (Continente) , Especificidade da Espécie
11.
J Magn Reson ; 364: 107708, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38901173

RESUMO

Bacterial cell walls are gigadalton-large cross-linked polymers with a wide range of motional amplitudes, including rather rigid as well as highly flexible parts. Magic-angle spinning NMR is a powerful method to obtain atomic-level information about intact cell walls. Here we investigate sensitivity and information content of different homonuclear 13C13C and heteronuclear 1H15N, 1H13C and 15N13C correlation experiments. We demonstrate that a CPMAS CryoProbe yields ca. 8-fold increased signal-to-noise over a room-temperature probe, or a ca. 3-4-fold larger per-mass sensitivity. The increased sensitivity allowed to obtain high-resolution spectra even on intact bacteria. Moreover, we compare resolution and sensitivity of 1H MAS experiments obtained at 100 kHz vs. 55 kHz. Our study provides useful hints for choosing experiments to extract atomic-level details on cell-wall samples.


Assuntos
Isótopos de Carbono , Parede Celular , Parede Celular/química , Corynebacterium , Isótopos de Nitrogênio , Ressonância Magnética Nuclear Biomolecular/métodos , Espectroscopia de Ressonância Magnética/métodos , Razão Sinal-Ruído
12.
FEMS Microbiol Lett ; 3712024 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-38849295

RESUMO

The differential soil microbial assimilation of common nitrogen (N) fertilizer compounds into the soil organic N pool is revealed using novel compound-specific amino acid (AA) 15N-stable isotope probing. The incorporation of fertilizer 15N into individual AAs reflected the known biochemistry of N assimilation-e.g. 15N-labelled ammonium (15NH4+) was assimilated most quickly and to the greatest extent into glutamate. A maximum of 12.9% of applied 15NH4+, or 11.7% of 'retained' 15NH4+ (remaining in the soil) was assimilated into the total hydrolysable AA pool in the Rowden Moor soil. Incorporation was lowest in the Rowden Moor 15N-labelled nitrate (15NO3-) treatment, at 1.7% of applied 15N or 1.6% of retained 15N. Incorporation in the 15NH4+ and 15NO3- treatments in the Winterbourne Abbas soil, and the 15N-urea treatment in both soils was between 4.4% and 6.5% of applied 15N or 5.2% and 6.4% of retained 15N. This represents a key step in greater comprehension of the microbially mediated transformations of fertilizer N to organic N and contributes to a more complete picture of soil N-cycling. The approach also mechanistically links theoretical/pure culture derived biochemical expectations and bulk level fertilizer immobilization studies, bridging these different scales of understanding.


Assuntos
Fertilizantes , Isótopos de Nitrogênio , Nitrogênio , Microbiologia do Solo , Fertilizantes/análise , Nitrogênio/metabolismo , Isótopos de Nitrogênio/metabolismo , Isótopos de Nitrogênio/análise , Solo/química , Bactérias/metabolismo , Aminoácidos/metabolismo , Nitratos/metabolismo , Compostos de Amônio/metabolismo
13.
PLoS One ; 19(6): e0301775, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38865323

RESUMO

One of the largest isotopic datasets of the ancient Eastern Mediterranean region is evaluated, based on plants (n = 410), animals (n = 210) and humans (n = 16) from Tell Tweini (Syria). Diachronic analysis of plant and faunal specimens from four main periods of occupation: Early Bronze Age (2600-2000 BC), Middle Bronze Age (2000-1600 BC), Late Bronze Age (1600-1200 BC) and Iron Age (1200-333 BC) were investigated. Mean Δ13C results from seven plant species reveal emmer and free threshing wheat, olives, bitter vetch, rye grass and barley were adequately or well-watered during all periods of occupation. The grape Δ13C results suggest excellent growing conditions and particular care for its cultivation. The δ15N results indicate that especially the emmer and free threshing wheats received some manure inputs throughout the occupation sequence, while these were likely further increased during the Iron Age, encompassing also the olive groves and grape vineyards. Generally, domestic animals (cattle, sheep, goats) had C3 terrestrial diets and were kept together in similar environments. However, some animals consumed significant amounts of marine or C4 plants, possibly from disturbed habitats due to land use pressure or salt tolerant grasses and shrubs from wetland environments, which were recorded in the direct vicinity of the site. Middle Bronze Age humans consumed a C3 terrestrial diet with no measurable input from C4, freshwater or marine protein sources. Interestingly, the human diet was relatively low in animal protein and appears comparable to what is considered today a typical Mediterranean diet consisting of bread (wheat/barley), olives, grapes, pulses, dairy products and small amounts of meat. The combined isotopic analysis of plants, animals and humans from Tell Tweini represents unbroken links in the food chain which create unparalleled opportunities to enhance our current understanding of environmental conditions, climate change and lifeways in past populations from the Eastern Mediterranean.


Assuntos
Plantas , Humanos , Animais , Plantas/química , História Antiga , Dieta/história , Mudança Climática , Arqueologia , Isótopos de Carbono/análise , Isótopos de Nitrogênio/análise , Agricultura/história
14.
Ying Yong Sheng Tai Xue Bao ; 35(4): 877-885, 2024 Apr 18.
Artigo em Chinês | MEDLINE | ID: mdl-38884222

RESUMO

The natural abundance of stable carbon and nitrogen isotopes (δ13C and δ15N) in leaves can provide comprehensive information on the physiological and ecological processes of plants and has been widely used in ecological research. However, recent studies on leaf δ13C and δ15N have focused mainly on woody species, few studies have been conducted on herbs in different vegetation types, and their differences and driving factors are still unclear. In this study, we focused on the herbs in subalpine coniferous forests, alpine shrublands, and alpine mea-dows on the eastern Qinghai-Tibet Plateau, and investigated the differences in leaf δ13C and δ15N of herbs and the driving factors. The results showed that there were significant differences in leaf δ13C and δ15N values of herbs among different vegetation types, with the highest δ13C and δ15N values in alpine meadows, followed by alpine shrublands, and the lowest in subalpine coniferous forests. Using variation partitioning analysis, we revealed that differences in leaf δ13C and δ15N of herbs among various vegetation types were driven by both leaf functional traits and climate factors, with the contribution of leaf functional traits being relatively higher than that of climate factors. Hierarchical partitioning results indicated that mean annual temperature (MAT), chlorophyll content index, leaf nitrogen content per unit area (Narea), and leaf mass per area were the main drivers of leaf δ13C variations of herbs across different vegetation types, while the relative importance of Narea and MAT for variation in leaf δ15N of herbs was much higher than those other variables. There was a strong coupling relationship between leaf δ13C and δ15N as indicated by the result of the ordinary least squares regression. Our findings could provide new insights into understanding the key drivers of leaf δ13C and δ15N variations in herbs across different vegetation types.


Assuntos
Isótopos de Carbono , Ecossistema , Isótopos de Nitrogênio , Folhas de Planta , Folhas de Planta/química , Folhas de Planta/metabolismo , Isótopos de Nitrogênio/análise , Isótopos de Carbono/análise , Tibet , China , Florestas , Altitude , Árvores/crescimento & desenvolvimento , Árvores/metabolismo , Árvores/química , Traqueófitas/crescimento & desenvolvimento , Traqueófitas/química , Traqueófitas/metabolismo , Pradaria , Poaceae/crescimento & desenvolvimento , Poaceae/química , Poaceae/metabolismo
15.
PLoS One ; 19(6): e0304495, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38875228

RESUMO

Discerning assimilated diets of wild animals using stable isotopes is well established where potential dietary items in food webs are isotopically distinct. With the advent of mixing models, and Bayesian extensions of such models (Bayesian Stable Isotope Mixing Models, BSIMMs), statistical techniques available for these efforts have been rapidly increasing. The accuracy with which BSIMMs quantify diet, however, depends on several factors including uncertainty in tissue discrimination factors (TDFs; Δ) and identification of appropriate error structures. Whereas performance of BSIMMs has mostly been evaluated with simulations, here we test the efficacy of BSIMMs by raising domestic broiler chicks (Gallus gallus domesticus) on four isotopically distinct diets under controlled environmental conditions, ideal for evaluating factors that affect TDFs and testing how BSIMMs allocate individual birds to diets that vary in isotopic similarity. For both liver and feather tissues, δ13C and δ 15N values differed among dietary groups. Δ13C of liver, but not feather, was negatively related to the rate at which individuals gained body mass. For Δ15N, we identified effects of dietary group, sex, and tissue type, as well as an interaction between sex and tissue type, with females having higher liver Δ15N relative to males. For both tissues, BSIMMs allocated most chicks to correct dietary groups, especially for models using combined TDFs rather than diet-specific TDFs, and those applying a multiplicative error structure. These findings provide new information on how biological processes affect TDFs and confirm that adequately accounting for variability in consumer isotopes is necessary to optimize performance of BSIMMs. Moreover, results demonstrate experimentally that these models reliably characterize consumed diets when appropriately parameterized.


Assuntos
Teorema de Bayes , Isótopos de Carbono , Galinhas , Isótopos de Nitrogênio , Animais , Galinhas/crescimento & desenvolvimento , Feminino , Isótopos de Carbono/análise , Masculino , Isótopos de Nitrogênio/análise , Dieta/veterinária , Fígado/metabolismo , Plumas/química , Plumas/metabolismo , Cadeia Alimentar , Modelos Biológicos
16.
Methods Mol Biol ; 2796: 23-34, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38856893

RESUMO

Solid-state NMR allows for the study of membrane proteins under physiological conditions. Here we describe a method for detection of bound ions in the selectivity filter of ion channels using solid-state NMR. This method employs standard 1H-detected solid-state NMR setup and experiment types, which is enabled by using 15N-labelled ammonium ions to mimic potassium ions.


Assuntos
Compostos de Amônio , Canais Iônicos , Isótopos de Nitrogênio , Isótopos de Nitrogênio/análise , Compostos de Amônio/química , Compostos de Amônio/análise , Canais Iônicos/metabolismo , Canais Iônicos/química , Íons/química , Ressonância Magnética Nuclear Biomolecular/métodos , Espectroscopia de Ressonância Magnética/métodos
17.
PeerJ ; 12: e17457, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38854793

RESUMO

For many species, the relationship between space use and diet composition is complex, with individuals adopting varying space use strategies such as territoriality to facilitate resource acquisition. Coyotes (Canis latrans) exhibit two disparate types of space use; defending mutually exclusive territories (residents) or moving nomadically across landscapes (transients). Resident coyotes have increased access to familiar food resources, thus improved foraging opportunities to compensate for the energetic costs of defending territories. Conversely, transients do not defend territories and are able to redirect energetic costs of territorial defense towards extensive movements in search of mates and breeding opportunities. These differences in space use attributed to different behavioral strategies likely influence foraging and ultimately diet composition, but these relationships have not been well studied. We investigated diet composition of resident and transient coyotes in the southeastern United States by pairing individual space use patterns with analysis of stable carbon (δ13C) and nitrogen (δ15N) isotope values to assess diet. During 2016-2017, we monitored 41 coyotes (26 residents, 15 transients) with GPS radio-collars along the Savannah River area in the southeastern United States. We observed a canopy effect on δ13C values and little anthropogenic food in coyote diets, suggesting 13C enrichment is likely more influenced by reduced canopy cover than consumption of human foods. We also observed other land cover effects, such as agricultural cover and road density, on δ15N values as well as reduced space used by coyotes, suggesting that cover types and localized, resident-like space use can influence the degree of carnivory in coyotes. Finally, diets and niche space did not differ between resident and transient coyotes despite differences observed in the proportional contribution of potential food sources to their diets. Although our stable isotope mixing models detected differences between the diets of resident and transient coyotes, both relied mostly on mammalian prey (52.8%, SD = 15.9 for residents, 42.0%, SD = 15.6 for transients). Resident coyotes consumed more game birds (21.3%, SD = 11.6 vs 13.7%, SD = 8.8) and less fruit (10.5%, SD = 6.9 vs 21.3%, SD = 10.7) and insects (7.2%, SD = 4.7 vs 14.3%, SD = 8.5) than did transients. Our findings indicate that coyote populations fall on a feeding continuum of omnivory to carnivory in which variability in feeding strategies is influenced by land cover characteristics and space use behaviors.


Assuntos
Coiotes , Isótopos de Nitrogênio , Coiotes/fisiologia , Animais , Isótopos de Nitrogênio/análise , Isótopos de Carbono/análise , Carnivoridade , Dieta , Territorialidade , Sudeste dos Estados Unidos , Comportamento Alimentar/fisiologia
18.
Sci Rep ; 14(1): 13334, 2024 06 10.
Artigo em Inglês | MEDLINE | ID: mdl-38858480

RESUMO

The Namib Desert is a hyperarid coastal desert where fog is a major moisture source. We hypothesized that the fog-harvesting grass Stipagrostis sabulicola establishes an important ecological niche, termed the "Fog-Plant-Oases" (FPOs), and serves as the primary carbon source for the invertebrate community. To determine this, we measured the natural variations of the stable carbon and nitrogen isotopes (δ13C and δ15N) of invertebrates as well as that of plant biomass and belowground detritus and estimated the contributions of the fog plants in their diets. Our findings revealed a complex trophic structure and demonstrated that S. sabulicola fuels carbon flow from lower to higher trophic levels in the aboveground food web. The distinct δ13C values of bacterial- and fungal-feeding nematodes indicated however the separation of the aboveground niche, which is primarily sustained by S. sabulicola, from the belowground niche, where wind-blown sediments may serve as the main energy source for the soil biota. Our findings further accentuate the critical role of S. sabulicola FPOs in establishing complex trophic dynamics and a distinctive food web within the hyperarid Namib dunes.


Assuntos
Ecossistema , Cadeia Alimentar , Animais , Namíbia , Poaceae/metabolismo , Isótopos de Nitrogênio/análise , Isótopos de Nitrogênio/metabolismo , Isótopos de Carbono/análise , Biomassa , Clima Desértico , Solo/química , Carbono/metabolismo , Invertebrados
19.
Sci Rep ; 14(1): 14746, 2024 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-38926400

RESUMO

The determination of δ13C and δ15N values is a common method in archaeological isotope analysis-in studying botanical and human remains, dietary practices, and less typically soils (to understand methods of agricultural cultivation, including fertilization). Stable isotope measurements are also commonly used in ecological studies to distinguish different ecosystems and to trace diachronic processes and biogeochemical mechanisms, however, the application of this method in geochemical prospection, for determining historic land-use impact, remains unexplored. The study at hand focuses on a deserted site of a Cistercian manor, dating from the thirteenth to fifteenth centuries. Isotopic measurements of anthropogenically influenced soils have been compared to approximately 400 archaeobotanical, soil, and sediment samples collected globally. The results reveal the potential of isotope measurements in soil to study the impact of past land use as isotope measurements identify specific types of agricultural activities, distinguishing crop production or grazing. δ13C and δ15N ratios also likely reflect fertilization practices and-in this case-the results indicate the presence of cereal cultivation (C3 cycle plants) and fertilization and that the site of the medieval manor was primarily used for grain production rather than animal husbandry.


Assuntos
Isótopos de Carbono , Florestas , Isótopos de Nitrogênio , Solo , Isótopos de Carbono/análise , República Tcheca , História , Isótopos de Nitrogênio/análise , Solo/química
20.
J Hazard Mater ; 475: 134927, 2024 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-38885586

RESUMO

Herein, we investigated the trophic transfer of mercury (Hg) through food chains in different habitats (namely aquatic, riparian, and terrestrial) through bulk stable isotope analysis of nitrogen (δ15Nbulk) and compound-specific isotope analysis of nitrogen in amino acids (δ15NAA) using bird feathers and their potential food sources from a Hg-contaminated site in southwest China. Results showed similar δ15Nphe for water birds (4.7 ± 2.6 ‰) and aquatic food sources (5.2 ± 2.1 ‰) and for land-based food sources (10.1 ± 0.4 ‰) and terrestrial birds (11.6 ± 3.0 ‰), verifying δ15Nphe as a potential discriminant indicator for different food sources. The trophic positions (TPs) of most organisms based on δ15Nbulk (TPbulk) tended to overestimate compared with those based on δ15NAA (TPAA), especially for predators (such as kingfisher: ΔTP = 1.3). Additionally, significant differences were observed in the aquatic, riparian, and terrestrial food webs between trophic magnification slope (TMS)bulk and TMSAA (p < 0.05). The trophic magnification factor (TMF)AA-multiple based on multiple-AAs in three food webs were higher than the TMFAA and TMFbulk, probably because of the greater variation of δ15Nbaseline, complex food sources or the notably different in individual organisms. Altogether, our results improve the understanding of Hg trophic transfer in aquatic, riparian, and terrestrial food webs.


Assuntos
Aminoácidos , Aves , Monitoramento Ambiental , Plumas , Cadeia Alimentar , Mercúrio , Isótopos de Nitrogênio , Animais , Mercúrio/análise , Aminoácidos/química , Aminoácidos/análise , Plumas/química , Ecossistema , China , Poluentes Químicos da Água/análise
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