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1.
Analyst ; 149(14): 3765-3772, 2024 Jul 08.
Artigo em Inglês | MEDLINE | ID: mdl-38842353

RESUMO

Molecularly imprinted polymer (MIP)-based chromatographic separation materials, owing to their advantages of unique selectivity, low cost, suitable reproducibility, and acceptable stability, have attracted a great deal of research in different fields. In this investigation, a new type of MIP-coated silica (MIP/SiO2) separation material was developed using sulfamethoxazole as a template; the specific recognition ability of MIP and appropriate physicochemical properties (abundant Si-OH, suitable pore structure, good stability, etc.) of SiO2 microbeads were combined. The MIP/SiO2 separation materials were characterized carefully. Then, various compounds (such as sulfonamides, ginsenosides, nucleosides, and several pesticides) were used to comprehensively evaluate the chromatographic performances of the MIP/SiO2 column. Furthermore, the chromatographic performances of the MIP/SiO2 column were compared with those of other separation materials (such as non-imprinted polymer-coated silica, C18/SiO2, and bare silica) packed columns. The resolution value of all measured compounds was more than 1.51. The column efficiencies of 13 510 plates per meter (N m-1) for sulfamethoxazole, 11 600 N m-1 for ginsenoside Rd, and 10 510 N m-1 for 2'-deoxyadenosine were obtained. The acceptable results verified that the MIP/SiO2 column can be applied to separate highly polar drugs such as sulfonamides, ginsenosides, nucleosides, and pesticides.


Assuntos
Microesferas , Polímeros Molecularmente Impressos , Dióxido de Silício , Dióxido de Silício/química , Cromatografia Líquida de Alta Pressão/métodos , Polímeros Molecularmente Impressos/química , Ginsenosídeos/química , Ginsenosídeos/análise , Ginsenosídeos/isolamento & purificação , Impressão Molecular/métodos , Nucleosídeos/química , Nucleosídeos/isolamento & purificação , Nucleosídeos/análise , Praguicidas/análise , Praguicidas/química , Praguicidas/isolamento & purificação , Polímeros/química
2.
J Chromatogr A ; 1726: 464973, 2024 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-38729044

RESUMO

Hydrophilic interaction chromatography (HILIC) offers different selectivity than reversed-phase liquid chromatography (RPLC). However, our knowledge of the driving force for selectivity is limited and there is a need for a better understanding of the selectivity in HILIC. Quantitative assessment of retention mechanisms makes it possible to investigate selectivity based on understanding the underlying retention mechanisms. In this study, selected model compounds from the Ikegami selectivity tests were evaluated on different polar stationary phases. The study results revealed significant insights into the selectivity in HILIC. First, hydroxy and methylene selectivity is driven by hydrophilic partitioning; but surface adsorption for 2-deoxyuridine or 5-methyluridine reduces the selectivity factor. Furthermore, the retention of 2-deoxyuridine or 5-methyluridine by surface adsorption in combination with the phase ratio explain the difference in hydroxy or methylene selectivity observed among different stationary phases. Investigations on xanthine positional isomers (1-methylxanthine/3-methylxanthine, theophylline/theobromine) indicate that isomeric selectivity is controlled by surface adsorption; however, hydrophilic partitioning may contribute to resolution by enhancing overall retention. In addition, two pairs of nucleoside isomers (adenosine/vidarabine, 2'-deoxy and 3'-deoxyguanosine) provide an example that isomeric selectivity can also be controlled by hydrophilic partitioning if their partitioning coefficients are significantly different in HILIC. Although more data is needed, the current study provides a mechanistic based understanding of the selectivity in HILIC and potentially a new way to design selectivity tests.


Assuntos
Interações Hidrofóbicas e Hidrofílicas , Adsorção , Cromatografia Líquida/métodos , Isomerismo , Nucleosídeos/química , Nucleosídeos/análise , Cromatografia de Fase Reversa/métodos , Xantinas/química
3.
J Chromatogr A ; 1728: 465020, 2024 Aug 02.
Artigo em Inglês | MEDLINE | ID: mdl-38805896

RESUMO

Qianggan capsule (QGC) is a complex preparation composed of 16 traditional Chinese medicines (TCM) that can clear heat and dampness, fortify the spleen and blood, typify qi and relieve depression. However, the chemical composition of QGC remains incompletely understood, despite its clinical use in treating chronic hepatitis and liver injury. The objective of this study was to explore the quality markers of QGC through qualitative and quantitative analysis of its chemical components. First, the chemical composition of QGC was qualitatively analyzed using UHPLC-Q-TOF-MS/MS. Subsequently, the LC-sMRM method was developed and optimized to accurately quantify various chemical components of 10 batches of QGC. Finally, the variations in chemical components between batches were analyzed via multivariate statistical analysis. UHPLC-Q-TOF-MS/MS analysis revealed 167 chemical constituents in QGC, comprised of 48 flavonoids, 32 terpenoids, 18 phenolic acids, 9 coumarins, 9 phenylpropanoids, and 51 nucleosides, sugars, amino acids, anthraquinones, and other compounds. The LC-sMRM method was established for the quantitative analysis of 42 chemical components in 10 batches of QGC. The ultrasonic-assisted extraction parameters were optimized using RSM. Compared with conventional MRM, sMRM demonstrated superior sensitivity and precision. PCA and OPLS-DA identified eight chemical components with content differences among batches. This study established the chemical composition of QGC, offering useful guidance for assessing its quality.


Assuntos
Medicamentos de Ervas Chinesas , Espectrometria de Massas em Tandem , Medicamentos de Ervas Chinesas/química , Espectrometria de Massas em Tandem/métodos , Cromatografia Líquida de Alta Pressão/métodos , Flavonoides/análise , Flavonoides/química , Cumarínicos/química , Cumarínicos/análise , Terpenos/análise , Hidroxibenzoatos/análise , Reprodutibilidade dos Testes , Nucleosídeos/análise , Cápsulas/química
4.
Anal Methods ; 16(16): 2505-2512, 2024 Apr 25.
Artigo em Inglês | MEDLINE | ID: mdl-38584507

RESUMO

Solid phase extraction (SPE) and liquid chromatographic (LC) separation of nucleobases and nucleosides are challenging due to the high hydrophilicity of these compounds. Herein we report a novel on-line SPE-LC-MS/MS method for their quantification after pre-column derivatization with chloroacetaldehyde (CAA). The method proposed is selective and sensitive with limits of detection at the nano-molar level. Analysis of urine and saliva samples by using this method is demonstrated. Adenine, guanine, cytosine, adenosine, guanosine, and cytidine were found in the range from 0.19 (guanosine) to 1.83 µM (cytidine) in urine and from 0.015 (guanosine) to 0.79 µM (adenine) in saliva. Interestingly, methylation of cytidine was found to be significantly different in urine from that in saliva. While 5-hydroxymethylcytidine was detected at a very low level (<0.05 µM) in saliva, it was found to be the most prominent methylated cytidine in urine at a high level of 3.33 µM. Since on-line SPE is deployed, the proposed LC-MS/MS quantitative assay is convenient to carry out and offers good assay accuracy and repeatability.


Assuntos
Nucleosídeos , Saliva , Extração em Fase Sólida , Humanos , Limite de Detecção , Espectrometria de Massa com Cromatografia Líquida , Nucleosídeos/urina , Nucleosídeos/análise , Saliva/química , Extração em Fase Sólida/métodos
5.
Anal Sci ; 40(1): 85-91, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37843729

RESUMO

Rapid and effective separation of nucleotides (NTs) and their derivatives is crucial for studying their physiological functions. In this work, we comprehensively evaluated the separation ability of a zwitterionic hydrophilic monolith, i.e., poly(N,N-dimethyl-N-(3-methacrylamidopropyl)-N-(3-sulfopropyl)ammonium betaine-co-N,N'-methylenebisacrylamide) (poly(SPP-co-MBA)) for NTs analysis, including its selectivity, chemical stability under extremely basic condition and compatibility with hydrophilic interaction liquid chromatography (HILIC) coupled with mass spectrometry (HILIC-MS). The poly(SPP-co-MBA) monolith exhibited excellent chemical stability, as evidenced by the low relative standard deviation of retention time (0.16-1.05%) after 4000 consecutive injections over one month under strong alkaline elution condition (pH 10). After optimizing the separation conditions, including buffer pH and concentration, organic solvent content and column temperature, four nucleoside triphosphates, five nucleoside diphosphates and five nucleoside monophosphates were baseline separated within 7 min. Additionally, the mixtures containing one nucleoside and its corresponding mono-, di-, and triphosphates were baseline separated within only 3 min, respectively. It is good HILIC-MS compatibility was also confirmed by the satisfactory peak shape and high response of nine NTs. Overall, the proposed poly(SPP-co-MBA) monolith exhibited good mechanical stability and compatibility of HILIC-MS, making it a promising technique for NTs analysis.


Assuntos
Nucleosídeos , Nucleotídeos , Nucleotídeos/análise , Nucleosídeos/análise , Nucleosídeos/química , Cromatografia Líquida/métodos , Betaína/química , Interações Hidrofóbicas e Hidrofílicas
6.
J Am Soc Mass Spectrom ; 34(12): 2785-2792, 2023 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-37948765

RESUMO

The role of post-transcriptional modification in biological processes has been an ongoing field of study for several decades. Improvements in liquid chromatography platforms and mass spectrometry instrumentation have resulted in the enhanced identification, characterization, and quantification of modified nucleosides in biological systems. One consequence of the rapid technological improvements in the analytical acquisition of modified nucleosides has been a dearth of robust data processing workflows for analyzing more than a handful of samples at a time. To improve the utility of LC-MS/MS for batch analyses of modified nucleosides, a workflow for automated nucleoside identification has been developed. We adapted the Thermo Fisher Scientific metabolomics identification software package, Compound Discoverer, to accurately identify modified nucleosides from batch LC-MS/MS acquisitions. Three points of identification are used: accurate mass from a monoisotopic mass list, spectral matching from a spectral library, and neutral loss identification. This workflow was applied to a batch (n = 24) of urinary nucleosides, resulting in the accurate identification and relative quantification of 16 known nucleosides in less than 1 h.


Assuntos
Nucleosídeos , Espectrometria de Massas em Tandem , Cromatografia Líquida/métodos , Nucleosídeos/análise , Fluxo de Trabalho , Espectrometria de Massas em Tandem/métodos , Metabolômica/métodos
7.
J Chromatogr A ; 1706: 464268, 2023 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-37544237

RESUMO

Poly(ethyleneimine) (PEI) modified silica spheres were used to graft butyric acid and octanoic acid onto their surfaces, forming two stationary phases named Sil-PEI-BAD and Sil-PEI-CAD, respectively. Characterized methods including fourier transform infrared spectroscopy (FT-IR), elemental analysis (EA) and thermogravimetric analysis (TGA) were utilized to determine the successful synthesis of these two stationary phase materials. The chromatographic performance of these two stationary phases was analyzed with hydrophobic and hydrophilic compounds as analytes. Compared with Sil-PEI-CAD column, Sil-PEI-BAD column was more effective in separating hydrophilic compounds including nucleosides, alkaloids and vitamins. Hydrophobic substances including polycyclic aromatic hydrocarbons (PAHs) and alkylbenzenes obtained excellent separation results on Sil-PEI-CAD column than Sil-PEI-BAD column. Additionally, according to the separation of phenols, Sil-PEI-CAD column can be used in HILIC/RPLC mixed-mode. The results showed that the properties and retention mechanisms of the prepared stationary phases depended on the length of the alkyl chains bonded on the silica surface.


Assuntos
Cromatografia de Fase Reversa , Nucleosídeos , Cromatografia de Fase Reversa/métodos , Interações Hidrofóbicas e Hidrofílicas , Nucleosídeos/análise , Dióxido de Silício/química , Espectroscopia de Infravermelho com Transformada de Fourier
8.
Anal Bioanal Chem ; 415(22): 5511-5528, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37460824

RESUMO

In the present study, we developed and validated a fast, simple, and sensitive quantitative method for the simultaneous determination of eleven nucleosides and deoxynucleosides from urine samples. The analyses were performed with the use of liquid chromatography coupled with triple quadrupole mass spectrometry. The sample pretreatment procedure was limited to centrifugation, vortex mixing of urine samples with a methanol/water solution (1:1, v/v), evaporation and dissolution steps. The analysis lasted 20 min and was performed in dynamic multiple reaction monitoring mode (dMRM) in positive polarity. Process validation was conducted to determine the linearity, precision, accuracy, limit of quantification, stability, recovery and matrix effect. All validation procedures were carried out in accordance with current FDA and EMA regulations. The validated method was applied for the analysis of 133 urine samples derived from bladder cancer patients before tumor resection and 24 h, 2 weeks, and 3, 6, 9, and 12 months after the surgery. The obtained data sets were analyzed using a linear mixed-effect model. The analysis revealed that concentration level of 2-methylthioadenosine was decreased, while for inosine, it was increased 24 h after tumor resection in comparison to the preoperative state. The presented quantitative longitudinal study of urine nucleosides and deoxynucleosides before and up to 12 months after bladder tumor resection brings additional prospective insight into the metabolite excretion pattern in bladder cancer disease. Moreover, incurred sample reanalysis was performed proving the robustness and repeatability of the developed targeted method.


Assuntos
Nucleosídeos , Neoplasias da Bexiga Urinária , Humanos , Nucleosídeos/análise , Estudos Longitudinais , Espectrometria de Massas em Tandem/métodos , Neoplasias da Bexiga Urinária/cirurgia , Metabolômica , Cromatografia Líquida de Alta Pressão/métodos
9.
J Periodontal Res ; 58(5): 959-967, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37349891

RESUMO

OBJECTIVE: To analyse the salivary epitranscriptomic profiles as periodontitis biomarkers using multiplexed mass spectrometry (MS). BACKGROUND: The field of epitranscriptomics, which relates to RNA chemical modifications, opens new perspectives in the discovery of diagnostic biomarkers, especially in periodontitis. Recently, the modified ribonucleoside N6-methyladenosine (m6A) was revealed as a crucial player in the etiopathogenesis of periodontitis. However, no epitranscriptomic biomarker has been identified in saliva to date. MATERIALS AND METHODS: Twenty-four saliva samples were collected from periodontitis patients (n = 16) and from control subjects (n = 8). Periodontitis patients were stratified according to stage and grade. Salivary nucleosides were directly extracted and, in parallel, salivary RNA was digested into its constituent nucleosides. Nucleoside samples were then quantified by multiplexed MS. RESULTS: Twenty-seven free nucleosides were detected and an overlapping set of 12 nucleotides were detected in digested RNA. Among the free nucleosides, cytidine and three other modified nucleosides (inosine, queuosine and m6Am) were significantly altered in periodontitis patients. In digested RNA, only uridine was significantly higher in periodontitis patients. Importantly there was no correlation between free salivary nucleoside levels and the levels of those same nucleotides in digested salivary RNA, except for cytidine, m5C and uridine. This statement implies that the two detection methods are complementary. CONCLUSION: The high specificity and sensitivity of MS allowed the detection and quantification of multiple nucleosides from RNA and free nucleosides in saliva. Some ribonucleosides appear to be promising biomarkers of periodontitis. Our analytic pipeline opens new perspectives for diagnostic periodontitis biomarkers.


Assuntos
Nucleosídeos , Periodontite , Humanos , Nucleosídeos/análise , Espectrometria de Massas em Tandem , Cromatografia Líquida/métodos , Nucleotídeos/análise , Periodontite/diagnóstico , RNA/análise , Citidina/análise , Uridina , Biomarcadores/análise , Saliva/química
10.
Cells ; 12(4)2023 02 13.
Artigo em Inglês | MEDLINE | ID: mdl-36831267

RESUMO

In this Special Issue, a state-of-the-art review of the current knowledge of sample preparation and LC-MS techniques for the analyses of nucleosides and nucleotides in plants was published [...].


Assuntos
Metabolômica , Nucleosídeos , Metabolômica/métodos , Espectrometria de Massas/métodos , Cromatografia Líquida/métodos , Nucleosídeos/análise , Nucleotídeos , Plantas
11.
J Chromatogr A ; 1693: 463885, 2023 Mar 29.
Artigo em Inglês | MEDLINE | ID: mdl-36848731

RESUMO

We described two novel zwitterionic polymer-terminated porous silica stationary phases containing the same pyridinium cation and anions of different side chains (carboxylate and phosphonate groups) for use in hydrophilic interaction liquid chromatography (HILIC). These two novel columns were prepared by polymerizing 4-vinylpyridine and grafting it onto a silica surface, followed by quaternization reaction with 3-bromopropionic acid (Sil-VPC24) and (3-bromopropyl) phosphonic acid (Sil-VPP24), which possess positively charged pyridinium groups, and negatively charged carboxylate and phosphonate groups, respectively. The products obtained were verified through relevant characterization techniques such as elemental analysis, Fourier-transform infrared spectroscopy, thermogravimetric analysis, Zeta potential analysis, and Brunauer-Emmett-Teller analysis. The retention properties and mechanisms of different types of compounds (neutral, cationic, and anionic) on the two zwitterionic-modified silica stationary phases were studied by varying the buffer salt concentration and pH of the eluent. The separation of phenol and aromatic acids, disubstituted benzene isomers, sulfonamide drugs, as well as nucleosides/nucleobases were investigated on the two packed novel columns and a commercial zwitterionic column in identical HILIC mode, ensuring a thorough comparison between both novel columns and with a commercial standard. The results illustrated that various compounds could be separated up to various efficiencies based on the mechanism of hydrophilic interaction-based retention between the solutes and the two zwitterionic polymer stationary phases. The Sil-VPP24 column demonstrated the best separation performance out of the three, as well as flexible selectivity and excellent resolution. Both novel columns exhibited excellent stability and chromatographic repeatability for the separation of seven nucleosides and bases.


Assuntos
Nucleosídeos , Dióxido de Silício , Nucleosídeos/análise , Dióxido de Silício/química , Polímeros/análise , Porosidade , Cromatografia Líquida/métodos , Ácidos Carboxílicos , Interações Hidrofóbicas e Hidrofílicas
12.
J Chromatogr A ; 1689: 463773, 2023 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-36628808

RESUMO

The structural properties of ionic liquid stationary phases have a considerable effect on their separation selectivity. However, the difference of the chromatographic retention behavior of different regioisomeric ionic liquid stationary phases has rarely been investigated. In this study, three regioisomeric ionic liquid silane reagents were prepared by photoinitiated ene-click chemistry and bonded to silica by one-pot method to fabricate three new stationary phases (Sil-C2Im-C8, Sil-C6Im-C4, and Sil-C9Im-C1). All three stationary phases showed promising retention repeatability and efficiency. The retention behavior of the three stationary phases was investigated under various chromatographic conditions. The retention mechanism was further investigated by the linear energy solvation relationship and Van't Hoff plots. The stationary phases exhibited mixed-mode retention mechanisms. The π-π, hydrogen bonding, ion-exchange, and hydrophilic interactions with analytes were the weakest when the imidazole ions were embedded in the innermost part of the alkyl chains, while the interactions were the strongest when the imidazole ions were embedded in the middle of the alkyl chains. The three stationary phases provided great but different separation performances towards nucleosides, nucleobases, aromatic acids, alkyl benzenes, and polycyclic aromatic hydrocarbons due to the influence of imidazole ion position.


Assuntos
Líquidos Iônicos , Cromatografia Líquida/métodos , Líquidos Iônicos/química , Concentração de Íons de Hidrogênio , Nucleosídeos/análise , Imidazóis/química , Interações Hidrofóbicas e Hidrofílicas , Dióxido de Silício/química
13.
Anal Chem ; 95(2): 1608-1617, 2023 01 17.
Artigo em Inglês | MEDLINE | ID: mdl-36598775

RESUMO

As RNA post-transcriptional modifications are of growing interest, several methods were developed for their characterization. One of them established for their identification, at the nucleosidic level, is the hyphenation of separation methods, such as liquid chromatography or capillary electrophoresis, to tandem mass spectrometry. However, to our knowledge, no software is yet available for the untargeted identification of RNA post-transcriptional modifications from MS/MS data-dependent acquisitions. Thus, very long and tedious manual data interpretations are required. To meet the need of easier and faster data interpretation, a new user-friendly search engine, called Nucleos'ID, was developed for CE-MS/MS and LC-MS/MS users. Performances of this new software were evaluated on CE-MS/MS data from nucleoside analyses of already well-described Saccharomyces cerevisiae transfer RNA and Bos taurus total tRNA extract. All samples showed great true positive, true negative, and false discovery rates considering the database size containing all modified and unmodified nucleosides referenced in the literature. The true positive and true negative rates obtained were above 0.94, while the false discovery rates were between 0.09 and 0.17. To increase the level of sample complexity, untargeted identification of several RNA modifications from Pseudomonas aeruginosa 70S ribosome was achieved by the Nucleos'ID search following CE-MS/MS analysis.


Assuntos
Nucleosídeos , Espectrometria de Massas em Tandem , Animais , Bovinos , Espectrometria de Massas em Tandem/métodos , Cromatografia Líquida/métodos , Nucleosídeos/análise , Ferramenta de Busca , RNA de Transferência
14.
Biomed Chromatogr ; 37(3): e5560, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-36461617

RESUMO

Qi Zhi capsule (QZC) is approved by the State Drug Administration of China. The QZC consists of nine crude drugs, including astragalus, leeches, ground beetles, curcuma zedoary, hawthorn, semen cassiae, rhizoma sparganii, polygonum multiflorum, and peach kernel, of which leeches and ground beetles are Traditional Chinese Medicine of animal origin. Nucleosides are animal substances with pharmacological effects that are easy to extract and quantify. Different nucleoside analogs in distinct animal-based formulations can be used to characterize animal-based medicines. However, the quality control of a single indicator does not reflect the overall quality of Chinese medicine. Here, we developed a method to simultaneously determine the nucleoside analogs uracil, xanthine, hypoxanthine, uridine, guanine, and uric acid in QZCs using high-performance liquid chromatography. Hypoxanthine was used as an internal reference to determine relative correction factors for the other five components. The six components were determined in ten different batches of QZCs. There was no significant difference between the quantitative multicomponent analysis of a single marker and the external standard method. The relative standard deviation of total nucleosides analogs of 10 batches of samples was 7%. This method can be applied to simultaneously determine multiple active components in QZCs and other nucleoside analog drugs, enabling multi-indicator quality control.


Assuntos
Medicamentos de Ervas Chinesas , Animais , Medicamentos de Ervas Chinesas/química , Nucleosídeos/análise , Qi , Cromatografia Líquida de Alta Pressão/métodos , Hipoxantinas
15.
J Sep Sci ; 45(22): 4039-4051, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-36084259

RESUMO

Poria cocos is an edible fungus used as a health product and traditional Chinese medicinal preparation. Nevertheless, little is known about its nutrients. In this study, ultra-high performance liquid chromatography coupled with triple-quadrupole linear ion-trap tandem mass spectrometry was conducted to quantify nucleosides, nucleobases, and amino acids in 32 batches of Poria cocos samples collected from Anhui, Sichuan, Hubei, Hunan, and Guizhou. Subsequently, the linearity, precision, repeatability, stability, and recovery of our methods were validated. Samples from different regions were clearly separated by partial least squares discriminant analysis and cluster analysis. Our results suggested that Poria cocos samples from different geographical environments differed in nucleosides, nucleobases, and amino acids. The plot of variable importance for projection disclosed differential compositions of L-Leucine, Uridine, L-Asparagine, L-Glutamine, L-phenylalanine, L-Ornithine monohydrochloride, L-Hydroxyproline, Taurine, and Inosine in Poria cocos from five regions. We found the highest content of total analytes, total amino acids, and total non-essential amino acids in Poria cocos from Anhui, total essential amino acids in the Sichuan samples, and total nucleosides in the Hunan samples. Overall, we determined the content of Poria cocos-derived nucleosides, nucleobases, and amino acids, providing the foothold for further chemical mining and use of Poria cocos.


Assuntos
Poria , Wolfiporia , Wolfiporia/química , Espectrometria de Massas em Tandem/métodos , Nucleosídeos/análise , Aminoácidos/análise , Análise de Componente Principal , Cromatografia Líquida de Alta Pressão/métodos , Nutrientes/análise , Poria/química
16.
J Ethnopharmacol ; 299: 115696, 2022 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-36087845

RESUMO

ETHNOPHARMACOLOGICAL RELEVANCE: The rhizome of Pinellia ternata (Thunb.) Breit, called Pinelliae Rhizoma (PR) and Banxia in Chinese, is a well-known traditional Chinese medicine (TCM) with the functions of "removing dampness-phlegm" and "downbear counterflow and check vomiting". PR has potential toxic effects that can be detoxified by Fuzhi processing (repeated processing using one or multiple adjuvants) with specific adjuvants. AIM OF THE STUDY: This paper aims to provide a summary of traditional and current processing methods used to detoxify PR. MATERIALS AND METHODS: The available references of the processing methods of PR from the classic books of Materia Medica, literature, online databases and masters or doctoral theses are collected and summarized. We also discussed the possible processing mechanisms of how we can achieve a safer and effective application of PR via these processing methods. RESULTS: PR cannot be administered orally before processing. PR contains nucleoside alkaloids, cerebrosides, fatty acids, lectin, polysaccharides, and calcium oxalate crystals. To date, although the active substances of PR are still unclear, the toxic components are almost completely clarified as needle-like calcium oxalate crystals (NCOCs) and lectin proteins. Furthermore, the toxic effects of PR include causing death in animals, inflammation, conjunctival irritation, pregnancy toxicity, teratogenicity, visceral toxicity, aphonia and vomiting. From ancient times to now, Fuzhi methods have remained the predominant method for PR processing, and the main adjuvants used are ginger juice, alum, licorice and lime. In addition, detoxification mechanisms are related to removing or damaging the NCOC and lectin in PR based on processing with adjuvants. Currently, Fuzhi processing has been greatly improved, and novel processing technologies with novel adjuvants have been used for PR processing. However, there are still some flaws in PR processing, which should be urgently solved in the future, and clarifying the characteristic bioactive compounds in PR corresponding to its function or effects is the most important step for PR processing. CONCLUSION: Our present paper reviewed the previous literature regarding all aspects of the processing of PR, and this paper will be helpful for achieving a safer and effective application of PR and its processed products and will also be beneficial for the further optimization of processing technology and clinical medication safety of PR.


Assuntos
Alcaloides , Medicamentos de Ervas Chinesas , Materia Medica , Pinellia , Adjuvantes Farmacêuticos , Alcaloides/análise , Animais , Oxalato de Cálcio , Cerebrosídeos/análise , Medicamentos de Ervas Chinesas/química , Ácidos Graxos/análise , Lectinas/análise , Materia Medica/análise , Medicina Tradicional Chinesa , Nucleosídeos/análise , Pinellia/química , Rizoma/química , Tecnologia Farmacêutica/métodos , Vômito
17.
Artigo em Inglês | MEDLINE | ID: mdl-35917777

RESUMO

As part of RNA characterization, the identification of post-transcriptional modifications can be performed using hyphenation of separation methods with mass spectrometry. To identify RNA modifications with those methods, a first total digestion followed by a dephosphorylation step are usually required to reduce RNA to nucleosides. Even though effective digestion and dephosphorylation are essential to avoid further complications in analysis and data interpretation, to our knowledge, no standard protocol is yet referenced in the literature. Therefore, the aim of this work is to optimize the dephosphorylation step using a total extract of transfer RNA (tRNA)1 from B. taurus as a model and to determine and fix two protocols, leading to complete dephosphorylation, based on time and bacterial alkaline phosphatase (BAP)2 consumptions. Capillary electrophoresis-tandem mass spectrometry (CE-MS/MS) was used to estimate the dephosphorylation efficiency of both protocols on many canonical and modified nucleotides. For a timesaving protocol, we established that full dephosphorylation was obtained after a 4-hour incubation at 37 °C with 7.5 U of BAP for 1 µg of tRNA. And for a BAP-saving protocol, we established that full dephosphorylation was obtained 3.0 U of BAP after an overnight incubation at 37 °C. Both protocols are suitable for quantitative analyses as no loss of analytes is expected. Moreover, they can be widely used for all other RNA classes, including messenger RNA or ribosomal RNA.


Assuntos
RNA , Espectrometria de Massas em Tandem , Nucleosídeos/análise , Nucleotídeos , RNA/química , RNA de Transferência , Espectrometria de Massas em Tandem/métodos
18.
STAR Protoc ; 3(2): 101268, 2022 06 17.
Artigo em Inglês | MEDLINE | ID: mdl-35391937

RESUMO

Cellular RNAs are modified by both physiological factors and exogenous agents, such as methyl methanesulfonate (MMS). However, techniques for analyzing how proteins may interact with these modified RNAs are limited. Here, we provide a protocol combining RNA immunoprecipitation (RIP) with mass spectrometry (MS) to analyze the methylation state of the RNAs bound by Flag-tagged proteins in mammalian cells. The approach is highly quantitative and can simultaneously detect several methylated nucleosides in a single experiment. For complete details on the use and execution of this protocol, please refer to Tsao et al. (2021).


Assuntos
Nucleosídeos , RNA , Animais , Imunoprecipitação , Mamíferos/genética , Espectrometria de Massas/métodos , Metilação , Nucleosídeos/análise , Proteínas , RNA/química
19.
Crit Rev Anal Chem ; 52(7): 1624-1643, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-33840326

RESUMO

Nucleotides, which are important low-molecular-weight compounds present in organisms, are precursors of nucleic acids and participate in various regulatory and metabolic functions. Sensitive and valid methods for monitoring and determining nucleotides and nucleosides in different samples are urgently required. Due to the presence of numerous endogenous interferences in complex matrices and the high polarity of the molecules of the phosphate moiety, the determination of nucleotide content is challenging. This review summarizes the pretreatment and analysis methods of nucleotides in different samples. Advanced pretreatment methods, including different microextraction methods, solid-phase extraction based on novel materials, QuEChERS, are clearly displayed, and continuous progress which has been made in LC, LC-MS/MS and capillary electrophoresis methods are discussed. Moreover, the strengths and weaknesses of different methods are discussed and compared. Highlight:Advanced pretreatment and detection methods of nucleotides were critically reviewed.Microextraction technology was one of the trends of nucleotides pretreatment in the future.Applications of novel materials and supercritical fluid were highlighted.The evolution and advance of HRMS analyzers were in detailed.


Assuntos
Ácidos Nucleicos , Nucleotídeos , Cromatografia Líquida/métodos , Eletroforese Capilar , Nucleosídeos/análise , Nucleotídeos/análise , Nucleotídeos/metabolismo , Fosfatos , Espectrometria de Massas em Tandem
20.
Molecules ; 26(24)2021 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-34946568

RESUMO

Taxilli Herba (TAXH) is an important traditional Chinese medicine with a long history, dating from the Eastern Han Dynasty to the present times. However, the active constituents in it that parasitize different hosts vary, affecting its clinical efficacy. Given the complexity of the host origins, evaluating the quality of TAXH is critical to ensure the safety and effectiveness of clinical medication. In the present study, a quantitative method based on ultra-fast liquid chromatography tandem triple quadrupole mass spectrometry (UFLC-QTRAP-MS/MS) was established, which simultaneously determined the content of 33 active constituents, including 12 flavonoids, 4 organic acids, 12 amino acids, and 5 nucleosides in 45 samples. Orthogonal partial least squares discriminant analysis (OPLS-DA) was employed to classify and distinguish between TAXH and its adulterants, Tolypanthi Herba (TOLH). A hierarchical clustering analysis (HCA) was conducted combined with a heatmap to visually observe the distribution regularity of 33 constituents in each sample. Furthermore, gray relational analysis (GRA) was applied to evaluate the quality of samples to get the optimal host. The results demonstrated that TAXH excelled TOLH in quality as a whole. The quality of TAXH parasitizing Morus alba was also better, while those that were parasitic on Cinnamomum camphora and Glyptostrobus pensilis had relatively poor quality. This study may provide comprehensive information that is necessary for quality control and supply a scientific basis for further exploring the quality formation mechanism of TAXH.


Assuntos
Medicamentos de Ervas Chinesas/análise , Aminoácidos/análise , Cromatografia Líquida de Alta Pressão , Flavonoides/análise , Medicina Tradicional Chinesa , Análise Multivariada , Nucleosídeos/análise , Controle de Qualidade , Espectrometria de Massas em Tandem
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