Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 12.649
Filtrar
1.
PeerJ ; 12: e18118, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39346063

RESUMO

Microtubule (MT) consists of α-tubulin and ß-tubulin. The dynamic instability regulated by various microtubule associated proteins (MAPs) is essential for MT functions. To analyze the interaction between tubulin/MT and MAP in vivo, we usually need tubulin and MAP co-expressed. Here, we constructed a dual-transgene vector expressing rice (Oryza sativa) α-tubulin and MAP simultaneously. To construct this vector, plant expression vector pCambia1301 was used as the plasmid backbone and Gibson assembly cloning technology was used. We first fused and cloned the GFP fragment, α-tubulin open reading frame (ORF), and NOS terminator into the vector pCambia1301 to construct the p35S::GFP-α-tubulin vector that expressed GFP-α-tubulin fusion protein. Subsequently, we fused and cloned the CaMV 35S promoter, mCherry fragment, and NOS terminator into the p35S::GFP-α-tubulin vector to generate the universal dual-transgene expression vector (p35S::GFP-α-tubulin-p35S::mCherry vector). With the p35S::GFP-α-tubulin-p35S::mCherry vector, MAP ORF can be cloned into the site of 5' or 3' terminus of mCherry to co-express GFP-α-tubulin and MAP-mCherry/mCherry-MAP. To validate the availability and universality of the dual-transgene expression vector, a series of putative rice MAP genes including GL7, OsKCBP, OsCLASP, and OsMOR1 were cloned into the vector respectively, transformed into Agrobacterium tumefaciens strain, and expressed in Nicotiana benthamiana leaves. The results indicated that all of the MAPs were co-expressed with α-tubulin and localized to MTs, validating the availability and universality of the vector and that GL7, OsKCBP, OsCLASP, and OsMOR1 might be MAPs. The application of the co-expression vector constructed by us would facilitate studies on the interaction between tubulin/MT and MAP in tobacco transient expression systems or transgenic rice.


Assuntos
Vetores Genéticos , Proteínas Associadas aos Microtúbulos , Oryza , Tubulina (Proteína) , Oryza/genética , Oryza/metabolismo , Tubulina (Proteína)/genética , Tubulina (Proteína)/metabolismo , Vetores Genéticos/metabolismo , Proteínas Associadas aos Microtúbulos/genética , Proteínas Associadas aos Microtúbulos/metabolismo , Plantas Geneticamente Modificadas/genética , Proteínas Recombinantes de Fusão/metabolismo , Proteínas Recombinantes de Fusão/genética , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Microtúbulos/metabolismo , Microtúbulos/genética
2.
Sci Rep ; 14(1): 20856, 2024 09 06.
Artigo em Inglês | MEDLINE | ID: mdl-39242806

RESUMO

At present, biopharmaceuticals have received extensive attention from the society, among which recombinant proteins have a good growth trend and a large market share. Chinese hamster ovary (CHO) cells are the preferred mammalian system to produce glycosylated recombinant protein drugs. A highly efficient and stable cell screening method needs to be developed to obtain more and useful recombinant proteins. Limited dilution method, cell sorting, and semi-solid medium screening are currently the commonly used cell cloning methods. These methods are time-consuming and labor-intensive, and they have the disadvantage of low clone survival rate. Here, a method based on semi-solid medium was developed to screen out high-yielding and stable cell line within 3 weeks to improve the screening efficiency. The semi-solid medium was combined with an expression vector containing red fluorescent protein (RFP) for early cell line development. In accordance with the fluorescence intensity of RFP, the expression of upstream target gene could be indicated, and the fluorescence intensity was in direct proportion to the expression of upstream target gene. In conclusion, semi-solid medium combined with bicistronic expression vector provides an efficient method for screening stable and highly expressed cell lines.


Assuntos
Cricetulus , Proteínas Recombinantes , Células CHO , Animais , Proteínas Recombinantes/genética , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/metabolismo , Vetores Genéticos/genética , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Cricetinae , Proteína Vermelha Fluorescente , Meios de Cultura/química
3.
Nat Microbiol ; 9(9): 2308-2322, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-39227714

RESUMO

Swimming bacteria navigate chemical gradients using temporal sensing to detect changes in concentration over time. Here we show that surface-attached bacteria use a fundamentally different mode of sensing during chemotaxis. We combined microfluidic experiments, massively parallel cell tracking and fluorescent reporters to study how Pseudomonas aeruginosa senses chemical gradients during pili-based 'twitching' chemotaxis on surfaces. Unlike swimming cells, we found that temporal changes in concentration did not induce motility changes in twitching cells. We then quantified the chemotactic behaviour of stationary cells by following changes in the sub-cellular localization of fluorescent proteins as cells are exposed to a gradient that alternates direction. These experiments revealed that P. aeruginosa cells can directly sense differences in concentration across the lengths of their bodies, even in the presence of strong temporal fluctuations. Our work thus overturns the widely held notion that bacterial cells are too small to directly sense chemical gradients in space.


Assuntos
Quimiotaxia , Pseudomonas aeruginosa , Pseudomonas aeruginosa/fisiologia , Fímbrias Bacterianas/metabolismo , Microfluídica/métodos , Proteínas Luminescentes/metabolismo , Proteínas Luminescentes/genética
4.
J Phys Chem B ; 128(38): 9061-9073, 2024 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-39267290

RESUMO

Finding a unified fluorescence mechanism is essential to develop and utilize fluorescent proteins appropriately. Here, we report the unified role of the 145th residue on the fluorescence efficiency of fluorescent proteins developed from the jellyfish Aequorea victoria by demonstrating the difference and similarity between two representative fluorescent proteins, enhanced green fluorescent protein (eGFP), and enhanced yellow fluorescent protein (eYFP). We determined the fluorescence lifetimes of the 19 different Y145 mutants of eGFP and eYFP by picosecond time-resolved fluorescence spectroscopy. We found that the effect of the 145th mutation on the fluorescence lifetime is significant for eYFP but moderate for eGFP. We compared known crystal structures to clarify the observed difference between eGFP and eYFP. As a result, we conclude that the efficiency of the steric restriction of the chromophore motion by the 145th side chain is essentially the same for both eGFP and eYFP. Meanwhile, the restriction of the chromophore motion by hydrogen bonds is more pronounced for eGFP than for YFP. Balance of the steric effect and hydrogen bonding controls the lifetime of the Y145 mutants for eGFP and eYFP. Furthermore, the steric restriction is induced by the electrostatic effect; the different 145th residue induces a different electrostatic environment around the chromophore. The finding in this study reasonably explains the reported lifetimes of other fluorescent proteins and allows the prediction of the lifetime of unknown fluorescent proteins from jellyfish.


Assuntos
Proteínas de Fluorescência Verde , Proteínas Luminescentes , Animais , Proteínas Luminescentes/química , Proteínas Luminescentes/genética , Proteínas de Fluorescência Verde/química , Proteínas de Fluorescência Verde/genética , Espectrometria de Fluorescência , Fluorescência , Hidrozoários/química , Cifozoários/química , Mutação , Modelos Moleculares , Ligação de Hidrogênio
5.
Biochem Biophys Res Commun ; 733: 150715, 2024 Nov 12.
Artigo em Inglês | MEDLINE | ID: mdl-39317113

RESUMO

Post-translational modifications of histones play a crucial role in chromatin structure maintenance and epigenetic regulation. The LiveMIEL (Live-cell Microscopic Imaging of Epigenetic Landscape) method represents a promising approach for tracking histone modifications. It involves visualization of epigenetic modifications using genetically encoded fluorescent sensors and further analysis of the obtained intranuclear patterns by multiparametric image analysis. In this study, we designed three new red fluorescent sensors-MPP8-Red, AF9-Red and DPF3-Red-for live-cell visualization of patterns of H3K9me3, H3K8ac and H3K4me1, respectively. The observed fluorescent patterns were visually distinguishable, and LiveMIEL analysis clearly classified them into three corresponding groups. We propose that these sensors can be used for live-cell dynamic analysis of changes in organization of three epigenetic types of chromatin.


Assuntos
Epigênese Genética , Histonas , Histonas/metabolismo , Histonas/genética , Humanos , Processamento de Proteína Pós-Traducional , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Células HeLa , Cromatina/metabolismo , Cromatina/genética , Técnicas Biossensoriais/métodos , Microscopia de Fluorescência/métodos , Células HEK293 , Lisina/análogos & derivados
6.
Microb Biotechnol ; 17(9): e70008, 2024 09.
Artigo em Inglês | MEDLINE | ID: mdl-39287571

RESUMO

DNA damage occurs when cells encounter exogenous and endogenous stresses such as long periods of desiccation, ionizing radiation and genotoxic chemicals. Efforts have been made to detect DNA damage in vivo and in vitro to characterize or quantify the damage level. It is well accepted that single-stranded DNA (ssDNA) is one of the important byproducts of DNA damage to trigger the downstream regulation. A recent study has revealed that PprI efficiently recognizes ssDNA and cleaves DdrO at a specific site on the cleavage site region (CSR) loop in the presence of ssDNA, which enables the radiation resistance of Deinococcus. Leveraging this property, we developed a quantitative DNA damage detection method in vitro based on fluorescence resonance energy transfer (FRET). DdrO protein was fused with eYFP and eCFP on the N-terminal and C-terminal respectively, between which the FRET efficiency serves as an indicator of cleavage efficiency as well as the concentration of ssDNA. The standard curve between the concentration of ssDNA and the FRET efficiency was constructed, and application examples were tested, validating the effectiveness of this method.


Assuntos
Dano ao DNA , DNA de Cadeia Simples , Deinococcus , Transferência Ressonante de Energia de Fluorescência , Transferência Ressonante de Energia de Fluorescência/métodos , Deinococcus/genética , Deinococcus/efeitos da radiação , DNA de Cadeia Simples/genética , DNA de Cadeia Simples/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo
7.
In Vivo ; 38(5): 2115-2121, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39187323

RESUMO

BACKGROUND/AIM: We and others have previously shown that cell fusion plays an important role in cancer metastasis. Color coding of cancer and stromal cells with spectrally-distinct fluorescent proteins is a powerful tool, as pioneered by our laboratory to detect cell fusion. We have previously reported color-coded cell fusion between cancer cells and stromal cells in metastatic sites by using color-coded EL4 murine lymphoma cells and host mice expressing spectrally-distinct fluorescent proteins. Cell fusion occurred between cancer cells or, between cancer cells and normal cells, such as macrophages, fibroblasts, and mesenchymal stem cells. In the present study, the aim was to morphologically classify the fusion-hybrid cells observed in the primary tumor and multiple metastases EL4 formed from cells expressing red fluorescent protein (RFP) in transgenic mice expressing green fluorescent protein (GFP), in a syngeneic model. MATERIALS AND METHODS: RFP-expressing EL4 murine lymphoma cells were cultured in vitro. EL4-RFP cells were harvested and injected intraperitoneally into immunocompetent transgenic C57/BL6-GFP mice to establish a syngeneic model. Two weeks later, mice were sacrificed and each organ was harvested, cultured, and observed using confocal microscopy. RESULTS: EL4 intraperitoneal tumors (primary) and metastases in the lung, liver, blood, and bone marrow were formed. All tumors were harvested and cultured. In all specimens, RFP-EL4 cells, GFP-stromal cells, and fused yellow-fluorescent hybrid cells were observed. The fused hybrid cells showed various morphologies. Immune cell-like round-shaped yellow-fluorescent fused cells had a tendency to decrease with time in liver metastases and circulating blood. In contrast fibroblast-like spindle-shaped yellow-fluorescent fused cells increased in the intraperitoneal primary tumor, lung metastases, and bone marrow. CONCLUSION: Cell fusion between EL4-RFP cells and GFP stromal cells occurred in primary tumors and all metastatic sites. The morphology of the fused hybrid cells varied in the primary and metastatic sites. The present results suggest that fused cancer and stromal hybrid cells of varying morphology may play an important role in cancer progression.


Assuntos
Fusão Celular , Modelos Animais de Doenças , Proteínas Luminescentes , Linfoma , Camundongos Transgênicos , Proteína Vermelha Fluorescente , Células Estromais , Animais , Camundongos , Células Estromais/patologia , Células Estromais/metabolismo , Linhagem Celular Tumoral , Linfoma/patologia , Linfoma/genética , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Metástase Neoplásica , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Células Híbridas/patologia
8.
PLoS One ; 19(8): e0309192, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39208240

RESUMO

Realistic and modifiable infection models are required to study the pathogenesis of amphibian chytridiomycosis. Understanding the mechanism by which Batrachochytrium dendrobatidis (Bd) can infect and kill diverse amphibians is key to mitigating this pathogen and preventing further loss of biodiversity. In vitro studies of Bd typically rely on a tryptone based growth media, whereas the recent development of a kidney cell-line infection model has provided a more realistic alternative, without the need for live animals. Here we use expression of a fluorescent reporter to enhance the in vitro cell-line based growth assay, and show that transformed Bd cells are able to invade and grow in an amphibian kidney epithelial cell line (A6) as well as in a new system using a lung fibroblast cell line (DWJ). Both Bd and host cells were modified to express reporter fluorescent proteins, enabling immediate and continuous observation of the infection process without the need for destructive sampling for fixation and staining. Plasmid DNA conferring hygromycin resistance and TdTomato (RFP) expression was delivered to Bd zoospores via electroporation, and continuous antibiotic selection after recovery produced stable fluorescent Bd transformants. Host cells (A6 and DWJ) were transfected before each assay using lipofection to deliver plasmid DNA conferring green fluorescent protein (GFP) and containing an empty shRNA expression cassette. Bd RFP expression allowed easy localisation of fungal cells and identification of endobiotic growth was assisted by host GFP expression, by allowing visualization of the space in the host cell occupied by the invading fungal body. In addition to enabling enhanced live imaging, these methods will facilitate future genetic modification and characterisation of specific genes and their effect on Bd virulence.


Assuntos
Batrachochytrium , Animais , Batrachochytrium/genética , Linhagem Celular , Micoses/microbiologia , Micoses/veterinária , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Fluorescência , Fibroblastos/microbiologia , Fibroblastos/metabolismo
9.
Cell Rep ; 43(8): 114650, 2024 Aug 27.
Artigo em Inglês | MEDLINE | ID: mdl-39159043

RESUMO

We describe a binary expression aleatory mosaic (BEAM) system, which relies on DNA delivery by transfection or viral transduction along with nested recombinase activity to generate two genetically distinct, non-overlapping populations of cells for comparative analysis. Control cells labeled with red fluorescent protein (RFP) can be directly compared with experimental cells manipulated by genetic gain or loss of function and labeled with GFP. Importantly, BEAM incorporates recombinase-dependent signal amplification and delayed reporter expression to enable sharper delineation of control and experimental cells and to improve reliability relative to existing methods. We applied BEAM to a variety of known phenotypes to illustrate its advantages for identifying temporally or spatially aberrant phenotypes, for revealing changes in cell proliferation or death, and for controlling for procedural variability. In addition, we used BEAM to test the cortical protomap hypothesis at the individual radial unit level, revealing that area identity is cell autonomously specified in adjacent radial units.


Assuntos
Recombinases , Animais , Recombinases/metabolismo , Recombinases/genética , Mosaicismo , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Camundongos , Expressão Gênica/genética , Proteína Vermelha Fluorescente , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Fluorescência Verde/genética , Humanos
10.
Poult Sci ; 103(10): 104144, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39173570

RESUMO

The most current in vitro genetic methods, including gene preservation, gene editing and developmental modelling, require a significant number of healthy cells. In poultry species, primordial germ cells (PGCs) are great candidates for all the above-mentioned purposes, given their easy culturing and well-established freezing method for chicken. However, the constant monitoring of cultures can be financially challenging and consumes large amounts of solutions and accessories. This study aimed to introduce the Fluorescent Ubiquitination-based Cell Cycle Indicator (FUCCI) complex into the chicken PGCs. FUCCI is a powerful transgenic tool based on the periodic protein expression changes during the cell cycle. It includes chromatin licensing and DNA replication factor 1 attached monomeric Kusabira-Orange and Geminin-attached monomeric Azami-Green fluorescent proteins, that cause the cells to express a red signal in the G1 phase and a green signal in S and G2 phases. Modification of the chicken PGCs was done via electroporation and deemed to be successful according to confocal microscopy, DNA sequencing and timelapse video analysis. Stable clone cell lines were established, cryopreserved, and injected into recipient embryos to prove the integrational competency. The cell health monitoring was tested with medium change experiments, that proved the intended reactions of the FUCCI transgene. These results established the future for FUCCI experiments in chicken, including heat treatment and toxin treatment.


Assuntos
Ciclo Celular , Galinhas , Células Germinativas , Animais , Ubiquitinação , Embrião de Galinha , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Eletroporação/veterinária , Eletroporação/métodos
11.
ACS Biomater Sci Eng ; 10(8): 5210-5225, 2024 Aug 12.
Artigo em Inglês | MEDLINE | ID: mdl-39087888

RESUMO

Lactococcus lactis (L. lactis), the first genetically modified Generally Recognized As Safe (GRAS) category Lactic Acid producing Bacteria (LAB), is best known for its generalized health-promoting benefits and ability to express heterologous proteins. However, achieving the optimal probiotic effects requires a selective approach that would allow us to study in vivo microbial biodistribution, fate, and immunological consequences. Although the chemical conjugation of fluorophores and chromophores represent the standard procedure to tag microbial cells for various downstream applications, it requires a high-throughput synthesis scheme, which is often time-consuming and expensive. On the contrary, the genetic manipulation of LAB vector, either chromosomally or extra-chromosomally, to express bioluminescent or fluorescent reporter proteins has greatly enhanced our ability to monitor bacterial transit through a complex gut environment. However, with faster passage and quick washing out from the gut due to rhythmic contractions of the digestive tract, real-time tracking of LAB vectors, particularly non-commensal ones, remains problematic. To get a deeper insight into the biodistribution of non-commensal probiotic bacteria in vivo, we bioengineered L. lactis to express fluorescence reporter proteins, mCherry (bright red monomeric fluorescent protein) and mEGFP (monomeric enhanced green fluorescent protein), followed by microencapsulation with a mucoadhesive and biodegradable polymer, chitosan. We show that coating of recombinant Lactococcus lactis (rL. lactis) with chitosan polymer, cross-linked with tripolyphosphate (TPP), retains their ability to express the reporter proteins stably without altering the specificity and sensitivity of fluorescence detection in vitro and in vivo. Further, we provide evidence of enhanced intragastric stability by chitosan-TPP (CS) coating of rL. lactis cells, allowing us to study the spatiotemporal distribution for an extended time in the gut of two unrelated hosts, avian and murine. The present scheme involving genetic modification and chitosan encapsulation of non-commensal LAB vector demonstrates great promise as a non-invasive and intensive tool for active live tracking of gut microbes.


Assuntos
Lactococcus lactis , Proteínas Luminescentes , Lactococcus lactis/genética , Lactococcus lactis/metabolismo , Animais , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Vetores Genéticos , Genes Reporter , Camundongos , Probióticos , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Proteína Vermelha Fluorescente
12.
Genetics ; 228(2)2024 Oct 07.
Artigo em Inglês | MEDLINE | ID: mdl-39103170

RESUMO

One problem that has hampered the use of red fluorescent proteins in the fast-developing nematode Caenorhabditis elegans has been the substantial time delay in maturation of several generations of red fluorophores. The recently described mScarlet-I3 protein has properties that may overcome this limitation. We compare here the brightness and onset of expression of CRISPR/Cas9 genome-engineered mScarlet, mScarlet3, mScarlet-I3, and GFP reporter knock-ins. Comparing the onset and brightness of expression of reporter alleles of C. elegans golg-4, encoding a broadly expressed Golgi resident protein, we found that the onset of detection of mScarlet-I3 in the embryo is several hours earlier than older versions of mScarlet and comparable to GFP. These findings were further supported by comparing mScarlet-I3 and GFP reporter alleles for pks-1, a gene expressed in the CAN neuron and cells of the alimentary system, as well as reporter alleles for the pan-neuronal, nuclear marker unc-75. Hence, the relative properties of mScarlet-I3 and GFP do not depend on cellular or subcellular context. In all cases, mScarlet-I3 reporters also show improved signal-to-noise ratio compared to GFP.


Assuntos
Proteínas de Caenorhabditis elegans , Caenorhabditis elegans , Proteínas Luminescentes , Proteína Vermelha Fluorescente , Animais , Caenorhabditis elegans/genética , Caenorhabditis elegans/metabolismo , Proteínas Luminescentes/metabolismo , Proteínas Luminescentes/genética , Proteínas de Caenorhabditis elegans/genética , Proteínas de Caenorhabditis elegans/metabolismo , Sistemas CRISPR-Cas , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Fluorescência Verde/genética , Genes Reporter
13.
Methods Mol Biol ; 2845: 151-160, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39115664

RESUMO

Mitochondria-targeted Keima (mt-Keima) is a pH-sensitive, acid-stable fluorescent protein used for the quantification of mitophagy. Mt-Keima contains a mitochondrial matrix targeting sequence and has bimodal excitation with peaks at 440 nM in neutral environments and 586 nM in acidic environments. From this bimodal excitation, a ratiometric signal may be calculated to quantify mitophagy in live cells. This chapter describes procedures for measuring mitophagy by flow cytometry and live cell confocal microscopy with mt-Keima.


Assuntos
Citometria de Fluxo , Microscopia Confocal , Mitocôndrias , Mitofagia , Humanos , Mitocôndrias/metabolismo , Microscopia Confocal/métodos , Citometria de Fluxo/métodos , Proteínas Luminescentes/metabolismo , Proteínas Luminescentes/genética , Células HeLa , Concentração de Íons de Hidrogênio
14.
Microb Cell Fact ; 23(1): 230, 2024 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-39152436

RESUMO

BACKGROUND: Non-conventional yeasts and bacteria gain significance in synthetic biology for their unique metabolic capabilities in converting low-cost renewable feedstocks into valuable products. Improving metabolic pathways and increasing bioproduct yields remain dependent on the strategically use of various promoters in these microbes. The development of broad-spectrum promoter libraries with varying strengths for different hosts is attractive for biosynthetic engineers. RESULTS: In this study, five Yarrowia lipolytica constitutive promoters (yl.hp4d, yl.FBA1in, yl.TEF1, yl.TDH1, yl.EXP1) and five Kluyveromyces marxianus constitutive promoters (km.PDC1, km.FBA1, km.TEF1, km.TDH3, km.ENO1) were selected to construct promoter-reporter vectors, utilizing α-amylase and red fluorescent protein (RFP) as reporter genes. The promoters' strengths were systematically characterized across Y. lipolytica, K. marxianus, Pichia pastoris, Escherichia coli, and Corynebacterium glutamicum. We discovered that five K. marxianus promoters can all express genes in Y. lipolytica and that five Y. lipolytica promoters can all express genes in K. marxianus with variable expression strengths. Significantly, the yl.TEF1 and km.TEF1 yeast promoters exhibited their adaptability in P. pastoris, E. coli, and C. glutamicum. In yeast P. pastoris, the yl.TEF1 promoter exhibited substantial expression of both amylase and RFP. In bacteria E. coli and C. glutamicum, the eukaryotic km.TEF1 promoter demonstrated robust expression of RFP. Significantly, in E. coli, The RFP expression strength of the km.TEF1 promoter reached ∼20% of the T7 promoter. CONCLUSION: Non-conventional yeast promoters with diverse and cross-domain applicability have great potential for developing innovative and dynamic regulated systems that can effectively manage carbon flux and enhance target bioproduct synthesis across diverse microbial hosts.


Assuntos
Escherichia coli , Vetores Genéticos , Kluyveromyces , Regiões Promotoras Genéticas , Yarrowia , Vetores Genéticos/genética , Yarrowia/genética , Yarrowia/metabolismo , Kluyveromyces/genética , Kluyveromyces/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Corynebacterium glutamicum/genética , Corynebacterium glutamicum/metabolismo , Proteína Vermelha Fluorescente , Genes Reporter , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Engenharia Metabólica/métodos , alfa-Amilases/genética , alfa-Amilases/metabolismo , Saccharomycetales
15.
Commun Biol ; 7(1): 945, 2024 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-39107369

RESUMO

Photosensitizing fluorescence protein is a promising tool for chromophore-assisted light inactivation (CALI) that enables specific oxidation and inactivation of intracellular molecules. However, a commonly used monomeric photosensitizing fluorescent protein, SuperNova, shows a low CALI efficiency due to its insufficient maturation at 37 °C, thereby limiting the application of CALI to various molecules, especially in mammalian cells. Here, we present a photosensitizing fluorescence protein, HyperNova, with markedly improved maturation at 37 °C, leading to greatly enhanced CALI efficiency. Exploiting this quality, HyperNova enables the application of CALI to variety of molecules such as a mitotic kinase and transcriptional factors that were highly challenging with conventional SuperNova. To further demonstrate the utility of HyperNova, we have also succeeded in developing novel CALI techniques for MAP kinases by HyperNova. Our findings suggest that HyperNova has the potential to expand the molecular toolbox for manipulating biological events in living cells, providing new avenues for investigating cellular signaling pathways.


Assuntos
Proteínas Luminescentes , Proteínas Luminescentes/metabolismo , Proteínas Luminescentes/genética , Humanos , Inativação Luminosa Assistida por Cromóforo , Fármacos Fotossensibilizantes/farmacologia , Células HeLa , Luz , Animais
16.
Mol Microbiol ; 122(4): 455-464, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39115038

RESUMO

The recently discovered methodologies to cultivate and genetically manipulate Treponema pallidum subsp. pallidum (T. pallidum) have significantly helped syphilis research, allowing the in vitro evaluation of antibiotic efficacy, performance of controlled studies to assess differential treponemal gene expression, and generation of loss-of-function mutants to evaluate the contribution of specific genetic loci to T. pallidum virulence. Building on this progress, we engineered the T. pallidum SS14 strain to express a red-shifted green fluorescent protein (GFP) and Sf1Ep cells to express mCherry and blue fluorescent protein (BFP) for enhanced visualization. These new resources improve microscopy- and cell sorting-based applications for T. pallidum, better capturing the physical interaction between the host and pathogen, among other possibilities. Continued efforts to develop and share new tools and resources are required to help our overall knowledge of T. pallidum biology and syphilis pathogenesis reach that of other bacterial pathogens, including spirochetes.


Assuntos
Proteínas Luminescentes , Sífilis , Treponema pallidum , Treponema pallidum/genética , Sífilis/microbiologia , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Humanos , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Proteína Vermelha Fluorescente , Virulência/genética , Treponema
17.
EMBO J ; 43(18): 4110-4135, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-38997504

RESUMO

Cell communication coordinates developmental processes, maintains homeostasis, and contributes to disease. Therefore, understanding the relationship between cells in a shared environment is crucial. Here we introduce Positive Ultra-bright Fluorescent Fusion For Identifying Neighbours (PUFFFIN), a cell neighbour-labelling system based upon secretion and uptake of positively supercharged fluorescent protein s36GFP. We fused s36GFP to mNeonGreen or to a HaloTag, facilitating ultra-bright, sensitive, colour-of-choice labelling. Secretor cells transfer PUFFFIN to neighbours while retaining nuclear mCherry, making identification, isolation, and investigation of live neighbours straightforward. PUFFFIN can be delivered to cells, tissues, or embryos on a customisable single-plasmid construct composed of interchangeable components with the option to incorporate any transgene. This versatility enables the manipulation of cell properties, while simultaneously labelling surrounding cells, in cell culture or in vivo. We use PUFFFIN to ask whether pluripotent cells adjust the pace of differentiation to synchronise with their neighbours during exit from naïve pluripotency. PUFFFIN offers a simple, sensitive, customisable approach to profile non-cell-autonomous responses to natural or induced changes in cell identity or behaviour.


Assuntos
Proteínas de Fluorescência Verde , Plasmídeos , Animais , Plasmídeos/genética , Plasmídeos/metabolismo , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Fluorescência Verde/genética , Camundongos , Humanos , Diferenciação Celular , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Comunicação Celular , Coloração e Rotulagem/métodos
18.
Cell Rep Methods ; 4(7): 100815, 2024 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-38986612

RESUMO

The ability of cells to sense and respond to mechanical forces is critical in many physiological and pathological processes. However, determining the mechanisms by which forces affect protein function inside cells remains challenging. Motivated by in vitro demonstrations of fluorescent proteins (FPs) undergoing reversible mechanical switching of fluorescence, we investigated whether force-sensitive changes in FP function could be visualized in cells. Guided by a computational model of FP mechanical switching, we develop a formalism for its detection in Förster resonance energy transfer (FRET)-based biosensors and demonstrate its occurrence in cellulo within a synthetic actin crosslinker and the mechanical linker protein vinculin. We find that in cellulo mechanical switching is reversible and altered by manipulation of cell force generation, external stiffness, and force-sensitive bond dynamics of the biosensor. This work describes a framework for assessing FP mechanical stability and provides a means of probing force-sensitive protein function inside cells.


Assuntos
Técnicas Biossensoriais , Transferência Ressonante de Energia de Fluorescência , Proteínas Luminescentes , Transferência Ressonante de Energia de Fluorescência/métodos , Proteínas Luminescentes/metabolismo , Proteínas Luminescentes/genética , Proteínas Luminescentes/química , Técnicas Biossensoriais/métodos , Humanos , Vinculina/metabolismo , Vinculina/química , Actinas/metabolismo , Actinas/química , Fenômenos Biomecânicos
19.
Biochem Biophys Res Commun ; 732: 150419, 2024 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-39032411

RESUMO

To enhance the photoconversion performance of biphotochromic moxSAASoti protein, a substitution F97 M was introduced. In addition to enhancing the target properties, this substitution also resulted in the crystallization of the recombinant protein within living HeLa cells (also referred to as in cellulo crystallization). The phenomenon of protein crystallization in living cells is not unique, yet the mechanisms and application of in cellulo crystallization remain significant for further research. However, in cellulo crystallization is atypical for fluorescent proteins and detrimental for their biotechnological application. The objective of this study was to elucidate the underlying mechanisms responsible for the crystallization of moxSAASotiF97Min cellulo. For this purpose, the crystal structure of the green form of biphotochromic protein moxSAASotiF97M was determined at high resolution, which surprisingly has a space group, different from those of parent mSAASotiC21N. The analysis provided allowed to propose a mechanism of new crystal contacts formation, which might be a cause of in cellulo protein crystallization.


Assuntos
Cristalização , Humanos , Células HeLa , Cristalografia por Raios X , Proteínas Luminescentes/química , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Modelos Moleculares , Substituição de Aminoácidos , Conformação Proteica
20.
Insect Biochem Mol Biol ; 173: 104163, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39068996

RESUMO

Tissue-specific gene promoters are desired as they provide the specificity needed for control of gene expression in transgenic animals. Here we describe a relatively rapid two-component transient expression assay that was used to identify a gene promoter active in the larval salivary glands of the green blow fly, Lucilia sericata. Sterile L.sericata maggots are widely used for wound debridement. A larval salivary gland gene promoter could be used to make maggots that secrete factors for enhanced wound therapy. Embryos from a line that carry a tetracycline transactivator (tTA)-activated red fluorescent protein gene were injected with plasmid DNA with the tTA gene driven by a constitutive or tissue-specific gene promoter. The hatched larvae were reared on diet and then examined for red fluorescence. A promoter from the LsCG30371 gene was active in the larval salivary glands. The tissue-specificity of the promoter was subsequently confirmed with stable transgenic lines that carried the LsCG30371-tTA gene. The relatively rapid transient expression assay could potentially be used to determine the tissue-specificity of other gene promoters. Further, the stable LsCG30371-tTA lines could be used to make sterile maggots that secrete factors from the salivary glands for enhanced wound healing.


Assuntos
Animais Geneticamente Modificados , Dípteros , Larva , Regiões Promotoras Genéticas , Glândulas Salivares , Animais , Larva/metabolismo , Larva/genética , Larva/crescimento & desenvolvimento , Glândulas Salivares/metabolismo , Dípteros/genética , Dípteros/metabolismo , Dípteros/crescimento & desenvolvimento , Proteínas Luminescentes/metabolismo , Proteínas Luminescentes/genética , Proteína Vermelha Fluorescente
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA
...