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1.
Appl Microbiol Biotechnol ; 108(1): 431, 2024 Aug 02.
Artigo em Inglês | MEDLINE | ID: mdl-39093478

RESUMO

African swine fever (ASF) is a highly contagious and fatal viral disease that has caused huge economic losses to the pig and related industries worldwide. At present, rapid, accurate, and sensitive laboratory detection technologies are important means of preventing and controlling ASF. However, because attenuated strains of African swine fever virus (ASFV) are constantly emerging, an ASFV antibody could be used more effectively to investigate the virus and control the disease on pig farms. The isolation of ASFV-specific antibodies is also essential for the diagnosis of ASF. Therefore, in this study, we developed two chemiluminescence immunoassays (CLIAs) to detect antibodies directed against ASFV p72: a traditional plate-type blocking CLIA (p72-CLIA) and an automatic tubular competitive CLIA based on magnetic particles (p72-MPCLIA). We compared the diagnostic performance of these two methods to provide a feasible new method for the effective prevention and control of ASF and the purification of ASFV. The cut-off value, diagnostic sensitivity (Dsn), and diagnostic specificity (Dsp) of p72-CLIA were 40%, 100%, and 99.6%, respectively, in known background serum, whereas those of p72-MPCLIA were 36%, 100%, and 99.6%, respectively. Thus, both methods show good Dsn, Dsp, and repeatability. However, when analytical sensitivity was evaluated, p72-MPCLIA was more sensitive than p72-CLIA or a commercial enzyme-linked immunosorbent assay. More importantly, p72-MPCLIA reduced the detection time to 15 min and allowed fully automated detection. In summary, p72-MPCLIA showed superior diagnostic performance and offered a new tool for detecting ASFV infections in the future. KEY POINTS: • Two chemiluminescence immunoassay (plate-type CLIA and tubular CLIA) methods based on p72 monoclonal antibody (mAb) were developed to detect ASFV antibody. • Both methods show good diagnostic performance (Dsn (100%), Dsp (99.6%), and good repeatability), and p72-MPCLIA detects antibodies against ASFV p72 with high efficiency in just 15 min.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Anticorpos Antivirais , Medições Luminescentes , Sensibilidade e Especificidade , Vírus da Febre Suína Africana/imunologia , Vírus da Febre Suína Africana/isolamento & purificação , Animais , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Febre Suína Africana/imunologia , Suínos , Anticorpos Antivirais/sangue , Anticorpos Antivirais/imunologia , Imunoensaio/métodos , Medições Luminescentes/métodos
2.
J Biosci ; 492024.
Artigo em Inglês | MEDLINE | ID: mdl-38952078

RESUMO

Owing to the lack of effective vaccines, current control measures and eradication strategies for the African swine fever virus (ASFV) rely on early detection and stringent stamping-out procedures. In the present study, we developed two independent isothermal amplification assays, namely, loop-mediated isothermal amplification (LAMP) and polymerase spiral reaction (PSR), for quick visualization of the ASFV genome in clinical samples. Additionally, a quantitative real-time PCR (qRT-PCR)-based hydrolysis probe assay was developed for comparative assessment of sensitivity with the developed isothermal assays. The analytical sensitivity of the LAMP, PSR, and qRT-PCR was found to be 2.64 ×105 copies/µL, 2.64 ×102 copies/µL, and 2.64 ×101 copies/µL, respectively. A total of 165 clinical samples was tested using the developed visual assays. The relative accuracy, relative specificity, and relative diagnostic sensitivity for LAMP vs PSR were found to be 95.37% vs 102.48%, 97.46% vs 101.36%, and 73.33% vs 113.33%, respectively.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Técnicas de Amplificação de Ácido Nucleico , Sensibilidade e Especificidade , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Animais , Técnicas de Amplificação de Ácido Nucleico/métodos , Suínos , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Reação em Cadeia da Polimerase em Tempo Real/métodos , Técnicas de Diagnóstico Molecular/métodos , Genoma Viral/genética
3.
Arch Virol ; 169(8): 170, 2024 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-39080100

RESUMO

African swine fever virus (ASFV) has spread through many countries and regions worldwide, causing significant losses. Timely detection of ASFV-infected pigs is crucial for disease control. In this study, we assessed the performance of two pen-side tests: a portable real-time PCR (qPCR) test for detecting viral genomic DNA and a lateral flow immunoassay (LFIA) for detecting viral antigens. To determine the time from infection to the earliest detection, 10 ASFV-seronegative pigs were inoculated intramuscularly with 104.0 hemadsorption dose 50 of a highly virulent ASFV strain. Whole blood and oral swab samples were alternately collected from each group of five pigs daily until all succumbed to the infection. Samples were promptly subjected to the two pen-side tests upon collection, and a subset was transported to a veterinary diagnostic laboratory for analysis using a reference qPCR assay. Viral genomic DNA was consistently detected by the reference qPCR assay in all blood samples from 2 days postinfection (dpi), preceding the onset of clinical signs, and in oral swabs from 4 dpi onwards. The portable qPCR test demonstrated comparable performance to the reference qPCR assay for both whole blood and oral swab samples. The LFIA exhibited 100% specificity when testing with whole blood samples but showed reduced sensitivity, particularly for blood samples collected early or late after infection. The antigen test did not perform well with oral swabs.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Reação em Cadeia da Polimerase em Tempo Real , Sensibilidade e Especificidade , Animais , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/genética , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Suínos , Reação em Cadeia da Polimerase em Tempo Real/métodos , Reação em Cadeia da Polimerase em Tempo Real/veterinária , DNA Viral/genética , Imunoensaio/métodos , Antígenos Virais/análise
4.
Vopr Virusol ; 69(3): 241-254, 2024 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-38996373

RESUMO

INTRODUCTION: The rapid spread of African swine fever in the Kaliningrad region makes it necessary to use the methods of molecular epidemiology to determine the dynamics and direction of ASF spread in this region of Russia. The aim of the study was to determine single nucleotide polymorphisms within molecular markers K145R, O174L and MGF 505-5R of ASFVs isolated in Kaliningrad region and to study the circulating of the pathogen in European countries by subgenotyping and spatio-temporal clustering analysis. MATERIALS AND METHODS: Blood samples from living domestic pigs and organs from dead domestic pigs and wild boars, collected in the Kaliningrad region between 2017 and 2022 were used. Virus isolation was carried out in porcine bone-marrow primary cell culture. Amplicons of genome markers were amplified by PCR with electrophoretic detection and subsequent extraction of fragments from agarose gel. Sequencing was performed using the Sanger method. RESULTS: The circulation of two genetic clusters of ASFV isolates on the territory of the Kaliningrad has been established: epidemic (K145R-III, MGF 505-5R-II, O174L-I - 94.3% of the studied isolates) and sporadic (K145R-II, MGF 505-5R-II, O174L-I - 5.7%). CONCLUSION: The broaden molecular genetic surveillance of ASFV isolates based on sequencing of genome markers is necessary in the countries of the Eurasian continent to perform a more detailed analysis of ASF spread between countries and within regions.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Genoma Viral , Animais , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/classificação , Suínos , Febre Suína Africana/virologia , Febre Suína Africana/epidemiologia , Federação Russa/epidemiologia , Filogenia , Polimorfismo de Nucleotídeo Único , Marcadores Genéticos , Sus scrofa/virologia , Análise Espaço-Temporal
5.
PLoS One ; 19(6): e0305702, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38905303

RESUMO

Since the confirmation of African swine fever (ASF) in South Korea in 2019, its spread, predominantly in wild boars, has been a significant concern. A key factor in this situation is the lack of identification of risk factors by surveillance bias. The unique orography, characterized by high mountains, complicates search efforts, leading to overlooked or delayed case detection and posing risks to the swine industry. Additionally, shared rivers with neighboring country present a continual threat of virus entry. This study employs geospatial analysis and statistical methods to 1) identify areas at high risk of ASF occurrence but possibly under-surveilled, and 2) indicate strategic surveillance points for monitoring the risk of ASF virus entry through water bodies and basin influences. Pearson's rho test indicated that elevation (rho = -0.908, p-value < 0.001) and distance from roads (rho = -0.979, p-value < 0.001) may have a significant impact on limiting surveillance activities. A map of potential under-surveilled areas was created considering these results and was validated by a chi-square goodness-of-fit test (X-square = 208.03, df = 1, p-value < 0.001). The strong negative correlation (rho = -0.997, p-value <0.001) between ASF-positive wild boars and distance from water sources emphasizes that areas surrounding rivers are one of the priority areas for monitoring. The subsequent hydrological analyses provided important points for monitoring the risk of virus entry via water from the neighboring country. This research aims to facilitate early detection and prevent further spread of ASF.


Assuntos
Febre Suína Africana , Febre Suína Africana/epidemiologia , Febre Suína Africana/virologia , Animais , Suínos , República da Coreia/epidemiologia , Animais Selvagens/virologia , Sus scrofa/virologia , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/patogenicidade , Monitoramento Epidemiológico/veterinária
6.
Arch Virol ; 169(7): 137, 2024 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-38847873

RESUMO

The present study focuses on the pathological and molecular characterization of African swine fever virus (ASFV) associated with an outbreak in wild boars in two national parks in southern India in 2022-2023. Significant mortality was observed among free-ranging wild boars at Bandipur National Park, Karnataka, and Mudumalai National Park, Tamil Nadu. Extensive combing operations were undertaken in both national parks, spanning an area of around 100 km2, originating from the reported epicenter, to estimate the mortality rate. Recovered carcasses were pathologically examined, and ASFV isolates was genetically characterized. Our findings suggested spillover infection of ASFV from nearby domestic pigs, and the virus was equally pathogenic in wild boars and domestic pigs. ASFV intrusion was reported in the Northeastern region of the country, which borders China and Myanmar, whereas the current outbreak is very distantly located, in southern India. Molecular data will help in tracing the spread of the virus in the country.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Surtos de Doenças , Sus scrofa , Animais , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Índia/epidemiologia , Suínos , Febre Suína Africana/virologia , Febre Suína Africana/epidemiologia , Febre Suína Africana/mortalidade , Sus scrofa/virologia , Surtos de Doenças/veterinária , Filogenia , Animais Selvagens/virologia
7.
Arch Virol ; 169(7): 147, 2024 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-38879716

RESUMO

African swine fever virus (ASFV) isolates are grouped and tracked through analysis of their central variable region (CVR) sequences. In this study, sequences of 70 ASFV isolates collected from different regions of Russia between 2018 and 2022 were analyzed. The analysis based on the CVR sequences indicated that the isolates belonged to three distinct groups. Group 1 shared 100% sequence identity to the isolate Georgia 2007/1. Group 5 had a C > A single-nucleotide polymorphism (SNP) at position 601, while group 13 is new and unique to the Far East of Russia, with five isolates from the Amur, Khabarovsk, and Primorsky regions. These findings demonstrate a new approach to phylogenomics and cladistics of ASFV isolates within genotype II on the basis of the CVR.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Genótipo , Filogenia , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/classificação , Vírus da Febre Suína Africana/isolamento & purificação , Animais , Federação Russa , Febre Suína Africana/virologia , Suínos , Polimorfismo de Nucleotídeo Único
8.
Parasit Vectors ; 17(1): 278, 2024 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-38943218

RESUMO

BACKGROUND: African swine fever (ASF) is a highly contagious and severe haemorrhagic disease of Suidae, with mortalities that approach 100 percent. Several studies suggested the potential implication of non-biting dipterans in the spread of ASFV in pig farms due to the identification of the ASFV DNA. However, to our knowledge, no study has evaluated the viral DNA load in non-biting dipterans collected in outbreak farms and no risk factors have been analysed. In this context, our study aimed to analyse the risk factors associated with the presence of non-biting dipterans collected from ASF outbreaks in relation to the presence and load of viral DNA. METHODS: Backyard farms (BF), type A farms (TAF), and commercial farms (CF), were targeted for sampling in 2020. In 2021, no BF were sampled. Each farm was sampled only once. The identification of the collected flies to family, genus, or species level was performed based on morphological characteristics using specific keys and descriptions. Pools were made prior to DNA extraction. All extracted DNA was tested for the presence of the ASFV using a real-time PCR protocol. For this study, we considered every sample with a CT value of 40 as positive. The statistical analysis was performed using Epi Info 7 software (CDC, USA). RESULTS: All collected non-biting flies belonged to five families: Calliphoridae, Sarcophagidae, Fanniidae, Drosophilidae, and Muscidae. Of the 361 pools, 201 were positive for the presence of ASFV DNA. The obtained CT values of the positive samples ranged from 21.54 to 39.63, with a median value of 33.59 and a mean value of 33.56. Significantly lower CT values (corresponding to higher viral DNA load) were obtained in Sarcophagidae, with a mean value of 32.56; a significantly higher number of positive pools were noticed in August, mean value = 33.12. CONCLUSIONS: Our study brings compelling evidence of the presence of the most common synanthropic flies near domestic pig farms carrying ASFV DNA, highlighting the importance of strengthening the biosecurity measures and protocols for prevention of the insect life cycle and distribution.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , DNA Viral , Dípteros , Surtos de Doenças , Fazendas , Animais , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/classificação , Febre Suína Africana/epidemiologia , Febre Suína Africana/virologia , Febre Suína Africana/transmissão , Suínos , Surtos de Doenças/veterinária , DNA Viral/genética , Romênia/epidemiologia , Dípteros/virologia , Dípteros/classificação , Dípteros/genética , Insetos Vetores/virologia , Insetos Vetores/classificação
9.
Viruses ; 16(5)2024 05 05.
Artigo em Inglês | MEDLINE | ID: mdl-38793613

RESUMO

African swine fever virus (ASFV) is the causative agent of a severe and highly contagious viral disease affecting domestic and wild swine. The current ASFV pandemic strain has a high mortality rate, severely impacting pig production and, for countries suffering outbreaks, preventing the export of their pig products for international trade. Early detection and diagnosis of ASFV is necessary to control new outbreaks before the disease spreads rapidly. One of the rate-limiting steps to identify ASFV by next-generation sequencing platforms is library preparation. Here, we investigated the capability of the Oxford Nanopore Technologies' VolTRAX platform for automated DNA library preparation with downstream sequencing on Nanopore sequencing platforms as a proof-of-concept study to rapidly identify the strain of ASFV. Within minutes, DNA libraries prepared using VolTRAX generated near-full genome sequences of ASFV. Thus, our data highlight the use of the VolTRAX as a platform for automated library preparation, coupled with sequencing on the MinION Mk1C for field sequencing or GridION within a laboratory setting. These results suggest a proof-of-concept study that VolTRAX is an effective tool for library preparation that can be used for the rapid and real-time detection of ASFV.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Biblioteca Gênica , Genoma Viral , Sequenciamento de Nucleotídeos em Larga Escala , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Animais , Suínos , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Sequenciamento de Nucleotídeos em Larga Escala/métodos , DNA Viral/genética , Análise de Sequência de DNA
10.
Viruses ; 16(5)2024 05 10.
Artigo em Inglês | MEDLINE | ID: mdl-38793635

RESUMO

Human health is dependent on food safety and, therefore, on the health of farm animals. One of the most significant threats in regard to swine diseases is African swine fever (ASF). Infections caused by porcine circoviruses (PCVs) represent another important swine disease. Due to the ubiquitous nature of PCV2, it is not surprising that this virus has been detected in ASFV-affected pigs. However, recent data indicate that coinfection of PCV3 and ASFV also occurs. It is still unclear whether PCV infection plays a role in ASFV infection, and that subject requires further analysis. The aim of this study was to assess whether PCV3 and PCV4 are present in the wild boar population in Poland (real-time PCR). The analysis was performed on wild boar samples collected for routine ASF surveillance in Poland, between 2018 and 2021. By extension, the obtained data were compared in regard to ASFV presence in these samples, thus investigating the odds of ASFV infection on the grounds of the PCV carrier state in free-ranging Suidae in Poland. In addition, sequencing of PCV3 and phylogenetic analysis were performed, based on a full genome and a capsid gene. In the current study, we demonstrated the high prevalence of PCV3 in the wild boar population in Poland; meanwhile, PCV4 was not detected. The odds of ASFV infection on the grounds of the PCV3 carrier state in free-ranging Suidae in Poland was more than twice as high. Ten full genome sequences of PCV3 were obtained, all of them belonging to clade 3a. The similarity between them was in the range of 98.78-99.80%.


Assuntos
Febre Suína Africana , Infecções por Circoviridae , Circovirus , Coinfecção , Filogenia , Sus scrofa , Animais , Polônia/epidemiologia , Circovirus/genética , Circovirus/isolamento & purificação , Circovirus/classificação , Suínos , Febre Suína Africana/epidemiologia , Febre Suína Africana/virologia , Sus scrofa/virologia , Prevalência , Infecções por Circoviridae/veterinária , Infecções por Circoviridae/epidemiologia , Infecções por Circoviridae/virologia , Coinfecção/epidemiologia , Coinfecção/veterinária , Coinfecção/virologia , Genoma Viral , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/classificação , Doenças dos Suínos/virologia , Doenças dos Suínos/epidemiologia
11.
Vet Microbiol ; 294: 110120, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38749211

RESUMO

Pig production is increasing annually in Africa as it is recognized as a significant source of income, livelihood and food security, particularly in rural communities. Understanding the circulating swine pathogens is crucial for the success of this emerging industry. Although there is extensive data available on the African swine fever virus due to its devastating impact on pig production, knowledge about the presence of other viral swine pathogens on the continent is still extremely limited. This review discusses what is currently known about six swine pathogens in Africa: classical swine fever virus, porcine reproductive and respiratory syndrome virus, porcine circovirus-2, porcine circovirus-3, porcine parvovirus-1, and pseudorabies virus. Gaps in our knowledge are identified and topics of future focus discussed.


Assuntos
Animais Selvagens , Circovirus , Doenças dos Suínos , Animais , Suínos , Doenças dos Suínos/virologia , Doenças dos Suínos/epidemiologia , África/epidemiologia , Circovirus/isolamento & purificação , Circovirus/genética , Circovirus/classificação , Animais Selvagens/virologia , Parvovirus Suíno/isolamento & purificação , Parvovirus Suíno/genética , Viroses/veterinária , Viroses/epidemiologia , Viroses/virologia , Vírus da Síndrome Respiratória e Reprodutiva Suína/isolamento & purificação , Vírus da Síndrome Respiratória e Reprodutiva Suína/genética , Vírus da Febre Suína Africana/isolamento & purificação , Animais Domésticos/virologia , Herpesvirus Suídeo 1/isolamento & purificação , Infecções por Circoviridae/veterinária , Infecções por Circoviridae/epidemiologia , Infecções por Circoviridae/virologia , Domesticação
12.
Microb Pathog ; 191: 106669, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38697231

RESUMO

African swine fever (ASF) is a lethal disease caused by ASF virus (ASFV), severely impacting the global swine industry. Though nuclear acid-based detection methods are reliable, they are laboratory-dependent. In this study, we developed a device-independent, user friendly and cost-effective quantum dots based immunochromatographic strip (QDs-ICS) with high specificity and sensitivity for the rapid and on-site detection of ASFV antigen. For the preparation of the QDs-ICS, we generated a monoclonal antibody (mAb) mAb-8G8 and polyclonal antibody (pAb) against ASFV-p72 protein. The pAb was labelled with QDs to be used as the detection probe and the mAb-8G8 was coated on the nitrocellulose membrane as the test line. Our results proved that the strip displayed no cross-reactivity with other swine viruses and detection limit of the QDs-ICS was down to 1 ng/mL for the ASFV-p72 protein with great reproducibility. The strip also exhibited high stability with a storage period up to 12 months under room temperature. Twenty blind samples and one hundred clinical samples were examined by the QDs-ICS, conventional PCR and real-time PCR method, respectively. Results showed that the agreement rate between the QDs-ICS and PCR method was 100%, and the agreement rate between the strip and real-time PCR was 94%. The novel QDs-ICS developed here would be an effective tool for on-site detection of ASFV.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Anticorpos Monoclonais , Anticorpos Antivirais , Antígenos Virais , Cromatografia de Afinidade , Pontos Quânticos , Sensibilidade e Especificidade , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/imunologia , Vírus da Febre Suína Africana/genética , Animais , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Febre Suína Africana/imunologia , Suínos , Anticorpos Monoclonais/imunologia , Anticorpos Antivirais/imunologia , Cromatografia de Afinidade/métodos , Antígenos Virais/análise , Antígenos Virais/imunologia , Reprodutibilidade dos Testes , Fitas Reagentes
13.
Braz J Microbiol ; 55(2): 1961-1966, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38589741

RESUMO

The FTA card has emerged as a promising alternative for nucleic acid extraction. The FTA card is a filter paper impregnated with chemicals that preserve and stabilize the genetic material present in the sample, allowing for its storage and transport at room temperature. The aim of this study was to test the card for the detection of RNA and DNA nucleic acids. Two RNA viruses (Senecavirus A and classical swine fever virus) and two DNA viruses (African swine fever virus and suid alphaherpesvirus 1) were tested, and in all cases, there was a decrease in sensitivity. The methods exhibited good repeatability and demonstrated a rapid and practical use for sample transport and nucleic acid extraction.


Assuntos
Vírus da Febre Suína Africana , Animais , Suínos , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Clássica/genética , Vírus da Febre Suína Clássica/isolamento & purificação , Herpesvirus Suídeo 1/isolamento & purificação , Herpesvirus Suídeo 1/genética , RNA Viral/genética , RNA Viral/isolamento & purificação , Medicina Veterinária/métodos , Doenças dos Suínos/virologia , Doenças dos Suínos/diagnóstico , Vírus de DNA/genética , Vírus de DNA/isolamento & purificação , Picornaviridae/genética , Picornaviridae/isolamento & purificação , Picornaviridae/classificação , Sensibilidade e Especificidade , DNA Viral/genética , Vírus de RNA/genética , Vírus de RNA/isolamento & purificação , Vírus de RNA/classificação , Infecções por Vírus de DNA/veterinária , Infecções por Vírus de DNA/diagnóstico , Infecções por Vírus de DNA/virologia , Manejo de Espécimes/métodos , Manejo de Espécimes/instrumentação
14.
ACS Sens ; 9(5): 2413-2420, 2024 05 24.
Artigo em Inglês | MEDLINE | ID: mdl-38635911

RESUMO

The highly contagious nature and 100% fatality rate contribute to the ongoing and expanding impact of the African swine fever virus (ASFV), causing significant economic losses worldwide. Herein, we developed a cascaded colorimetric detection using the combination of a CRISPR/Cas14a system, G-quadruplex DNAzyme, and microfluidic paper-based analytical device. This CRISPR/Cas14a-G4 biosensor could detect ASFV as low as 5 copies/µL and differentiate the wild-type and mutated ASFV DNA with 2-nt difference. Moreover, this approach was employed to detect ASFV in porcine plasma. A broad linear detection range was observed, and the limit of detection in spiked porcine plasma was calculated to be as low as 42-85 copies/µL. Our results indicate that the developed paper platform exhibits the advantages of high sensitivity, excellent specificity, and low cost, making it promising for clinical applications in the field of DNA disease detection and suitable for popularization in low-resourced areas.


Assuntos
Vírus da Febre Suína Africana , Técnicas Biossensoriais , Sistemas CRISPR-Cas , Colorimetria , DNA Catalítico , Quadruplex G , Papel , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Colorimetria/métodos , Técnicas Biossensoriais/métodos , DNA Catalítico/química , Animais , Sistemas CRISPR-Cas/genética , Suínos , DNA Viral/análise , DNA Viral/genética , Limite de Detecção
15.
Vet Microbiol ; 293: 110073, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38579481

RESUMO

African swine fever virus (ASFV) is a large double stranded DNA arbovirus that is highly contagious and seriously endangers domestic and wild pigs. In the past decade, African swine fever (ASF) has spread in many countries in the Caucasus, Russian Federation, Eastern Europe and Asia, causing significant losses to the pig industry. At present, there is a lack of effective vaccine and treatment for ASF. Therefore, the rapid and accurate detection is crucial for ASF prevention and control. In this study, we have developed a portable lateral flow strip (LFS) detection mediated by recombinase polymerase amplification (RPA) and CRISPR/LwCas13a, which is performed at 37 ℃ and visualized by eyes without the need for complex instruments. This RPA-LwCas13a-LFS is based on the ASFV structural protein p17 gene (D117L), with a detection sensitivity up to 2 gene copies. This method is highly specific and has no cross reactivity to 7 other pig viruses. In the detection of two batches of 100 clinical samples, the p17 (D117L) RPA-LwCas13a-LFS had 100% coincidence with conventional quantitative PCR (qPCR). These findings demonstrate the potential of this simple, rapid, sensitive, and specific ASFV detection method for on-site ASFV detection.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Sistemas CRISPR-Cas , Animais , Febre Suína Africana/virologia , Febre Suína Africana/diagnóstico , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Técnicas de Amplificação de Ácido Nucleico/métodos , Técnicas de Amplificação de Ácido Nucleico/veterinária , Sensibilidade e Especificidade , Suínos , Proteínas Estruturais Virais/análise , Proteínas Estruturais Virais/genética
16.
Viruses ; 16(4)2024 03 26.
Artigo em Inglês | MEDLINE | ID: mdl-38675848

RESUMO

Rapid and early detection of infectious diseases in pigs is important, especially for the implementation of control measures in suspected cases of African swine fever (ASF), as an effective and safe vaccine is not yet available in most of the affected countries. Additionally, analysis for swine influenza is of significance due to its high morbidity rate (up to 100%) despite a lower mortality rate compared to ASF. The wide distribution of swine influenza A virus (SwIAV) across various countries, the emergence of constantly new recombinant strains, and the danger of human infection underscore the need for rapid and accurate diagnosis. Several diagnostic approaches and commercial methods should be applied depending on the scenario, type of sample and the objective of the studies being implemented. At the early diagnosis of an outbreak, virus genome detection using a variety of PCR assays proves to be the most sensitive and specific technique. As the disease evolves, serology gains diagnostic value, as specific antibodies appear later in the course of the disease (after 7-10 days post-infection (DPI) for ASF and between 10-21 DPI for SwIAV). The ongoing development of commercial kits with enhanced sensitivity and specificity is evident. This review aims to analyse recent advances and current commercial kits utilised for the diagnosis of ASF and SwIAV.


Assuntos
Febre Suína Africana , Vírus da Influenza A , Infecções por Orthomyxoviridae , Kit de Reagentes para Diagnóstico , Sensibilidade e Especificidade , Animais , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Febre Suína Africana/epidemiologia , Suínos , Infecções por Orthomyxoviridae/diagnóstico , Infecções por Orthomyxoviridae/veterinária , Infecções por Orthomyxoviridae/virologia , Vírus da Influenza A/genética , Vírus da Influenza A/isolamento & purificação , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Técnicas de Laboratório Clínico/métodos , Doenças dos Suínos/diagnóstico , Doenças dos Suínos/virologia , Técnicas de Diagnóstico Molecular/métodos
17.
Viruses ; 16(4)2024 04 07.
Artigo em Inglês | MEDLINE | ID: mdl-38675912

RESUMO

In this paper, we report the characterization of a genetically modified live-attenuated African swine fever virus (ASFV) field strain isolated from Vietnam. The isolate, ASFV-GUS-Vietnam, belongs to p72 genotype II, has six multi-gene family (MGF) genes deleted, and an Escherichia coli GusA gene (GUS) inserted. When six 6-8-week-old pigs were inoculated with ASFV-GUS-Vietnam oro-nasally (2 × 105 TCID50/pig), they developed viremia, mild fever, lethargy, and inappetence, and shed the virus in their oral and nasal secretions and feces. One of the pigs developed severe clinical signs and was euthanized 12 days post-infection, while the remaining five pigs recovered. When ASFV-GUS-Vietnam was inoculated intramuscularly (2 × 103 TCID50/pig) into four 6-8 weeks old pigs, they also developed viremia, mild fever, lethargy, inappetence, and shed the virus in their oral and nasal secretions and feces. Two contact pigs housed together with the four intramuscularly inoculated pigs, started to develop fever, viremia, loss of appetite, and lethargy 12 days post-contact, confirming horizontal transmission of ASFV-GUS-Vietnam. One of the contact pigs died of ASF on day 23 post-contact, while the other one recovered. The pigs that survived the exposure to ASFV-GUS-Vietnam via the mucosal or parenteral route were fully protected against the highly virulent ASFV Georgia 2007/1 challenge. This study showed that ASFV-GUS-Vietnam field isolate is able to induce complete protection in the majority of the pigs against highly virulent homologous ASFV challenge, but has the potential for horizontal transmission, and can be fatal in some animals. This study highlights the need for proper monitoring and surveillance when ASFV live-attenuated virus-based vaccines are used in the field for ASF control in endemic countries.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Animais , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Vírus da Febre Suína Africana/patogenicidade , Vírus da Febre Suína Africana/classificação , Febre Suína Africana/virologia , Suínos , Vietnã , Viremia , Genoma Viral , Genótipo , Deleção de Sequência , Eliminação de Partículas Virais , Filogenia
18.
Arch Virol ; 169(5): 107, 2024 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-38647708

RESUMO

African swine fever (ASF) is a highly fatal and contagious viral disease caused by African swine fever virus (ASFV). It has caused significant economic losses to the swine industry and poses a serious threat to food security worldwide. Diagnostic tests with high sensitivity are essential for the effective management of ASF. Here, we describe a single-tube nested PCR (STN-PCR) assay for the detection of ASFV in which two consecutive amplification steps are carried out within a single tube. Two pairs of primers (outer and inner) were designed to target the p72 gene of ASFV. The primer concentrations, annealing temperatures, and number of amplification cycles were optimized to ensure the consecutive utilization of outer and inner primer pairs during amplification while minimizing the likelihood of amplicon contamination. In comparison with two conventional endpoint PCR assays (one of which is recommended by the World Organization for Animal Health), the newly developed STN-PCR assay demonstrated a 100-fold improvement in the limit of detection (LOD), detecting 100 copies of ASFV genomic DNA, whereas the endpoint PCR assays could detect no fewer than 10,000 copies. The clinical performance of the STN-PCR assay was validated using 95 tissue samples suspected of being positive for ASFV, and the assay showed 100% specificity. A Cohen's kappa value of 0.91 indicated perfect agreement between the assays. This new STN-PCR assay is a potentially valuable tool that will facilitate the control of ASF.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Reação em Cadeia da Polimerase , Sensibilidade e Especificidade , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Animais , Febre Suína Africana/diagnóstico , Febre Suína Africana/virologia , Suínos , Reação em Cadeia da Polimerase/métodos , Primers do DNA/genética , DNA Viral/genética , Limite de Detecção
19.
Front Cell Infect Microbiol ; 13: 1114772, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36779186

RESUMO

African swine fever virus (ASFV) currently represents the biggest threat to the porcine industry worldwide, with high economic impact and severe animal health and welfare concerns. Outbreaks have occurred in Europe and Asia since ASFV was reintroduced into the continent in 2007 and, in 2021, ASFV was detected in the Caribbean, raising alarm about the reemergence of the virus in the Americas. Given the lack of vaccines against ASFV, control of the virus relies on molecular surveillance, which can be delayed due to the need for sample shipment to specialized laboratories. Isothermal PCR techniques, such as LAMP, have become increasingly attractive as point-of-care diagnostic tools given the minimal material expense, equipment, and training required. The present study aimed to develop a LAMP assay for the detection of ASFV. Four LAMP primer sets were designed, based on a consensus sequence for the ASFV p72 gene, and were tested using a synthetic plasmid containing the cloned ASFV p72 target gene as a positive control. Two primer sets, were selected for further validation, given their very short time for amplification. Both primer sets showed thermal stability, amplifying the ASFV DNA at temperatures between 60-70°C and proved to have an analytical limit of detection as low as one ASFV-plasmid DNA copy/µL, using both fluorometric and colorimetric methods. The selected primers did not yield false positive or cross reactive results with other common swine pathogens, showing high specificity. Testing of DNA-spiked samples showed that LAMP amplification was not affected by the nature of the matrices, including oral fluids, tonsils, blood, or rectal swabs. The primer sets were able to detect the two more prevalent ASFV genotypes in the field. Taken together, the results show that ASFV-LAMP-BG2 and ASFV-LAMP-BG3 would be a useful tool for rapid, highly sensitive on-site diagnostic testing.


Assuntos
Vírus da Febre Suína Africana , Febre Suína Africana , Animais , Febre Suína Africana/diagnóstico , Vírus da Febre Suína Africana/genética , Vírus da Febre Suína Africana/isolamento & purificação , Clonagem Molecular , DNA Viral/genética , Reação em Cadeia da Polimerase , Sensibilidade e Especificidade , Suínos
20.
Biomed Environ Sci ; 35(2): 133-140, 2022 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-35197178

RESUMO

OBJECTIVE: To establish a sensitive, simple and rapid detection method for African swine fever virus (ASFV) B646L gene. METHODS: A recombinase-aided amplification-lateral flow dipstick (RAA-LFD) assay was developed in this study. Recombinase-aided amplification (RAA) is used to amplify template DNA, and lateral flow dipstick (LFD) is used to interpret the results after the amplification is completed. The lower limits of detection and specificity of the RAA assay were verified using recombinant plasmid and pathogenic nucleic acid. In addition, 30 clinical samples were tested to evaluate the performance of the RAA assay. RESULTS: The RAA-LFD assay was completed within 15 min at 37 °C, including 10 min for nucleic acid amplification and 5 minutes for LFD reading results. The detection limit of this assay was found to be 200 copies per reaction. And there was no cross-reactivity with other swine viruses. CONCLUSION: A highly sensitive, specific, and simple RAA-LFD method was developed for the rapid detection of the ASFV.


Assuntos
Vírus da Febre Suína Africana/genética , Febre Suína Africana/radioterapia , Febre Suína Africana/virologia , Técnicas de Amplificação de Ácido Nucleico/métodos , Febre Suína Africana/diagnóstico , Vírus da Febre Suína Africana/classificação , Vírus da Febre Suína Africana/isolamento & purificação , Animais , Técnicas de Amplificação de Ácido Nucleico/instrumentação , Recombinases/química , Sensibilidade e Especificidade , Suínos , Proteínas Virais/genética
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