Your browser doesn't support javascript.
loading
A statistical method of identifying interactions in neuron-glia systems based on functional multicell Ca2+ imaging.
Nakae, Ken; Ikegaya, Yuji; Ishikawa, Tomoe; Oba, Shigeyuki; Urakubo, Hidetoshi; Koyama, Masanori; Ishii, Shin.
Afiliación
  • Nakae K; Integrated Systems Biology Laboratory, Graduate School of Informatics, Kyoto University, Sakyo-ku, Kyoto, Japan.
  • Ikegaya Y; Laboratory of Chemical Pharmacology, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan; Center for Information and Neural Networks, Suita City, Osaka, Japan.
  • Ishikawa T; Laboratory of Chemical Pharmacology, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
  • Oba S; Integrated Systems Biology Laboratory, Graduate School of Informatics, Kyoto University, Sakyo-ku, Kyoto, Japan.
  • Urakubo H; Integrated Systems Biology Laboratory, Graduate School of Informatics, Kyoto University, Sakyo-ku, Kyoto, Japan.
  • Koyama M; Integrated Systems Biology Laboratory, Graduate School of Informatics, Kyoto University, Sakyo-ku, Kyoto, Japan.
  • Ishii S; Integrated Systems Biology Laboratory, Graduate School of Informatics, Kyoto University, Sakyo-ku, Kyoto, Japan.
PLoS Comput Biol ; 10(11): e1003949, 2014 Nov.
Article en En | MEDLINE | ID: mdl-25393874
Crosstalk between neurons and glia may constitute a significant part of information processing in the brain. We present a novel method of statistically identifying interactions in a neuron-glia network. We attempted to identify neuron-glia interactions from neuronal and glial activities via maximum-a-posteriori (MAP)-based parameter estimation by developing a generalized linear model (GLM) of a neuron-glia network. The interactions in our interest included functional connectivity and response functions. We evaluated the cross-validated likelihood of GLMs that resulted from the addition or removal of connections to confirm the existence of specific neuron-to-glia or glia-to-neuron connections. We only accepted addition or removal when the modification improved the cross-validated likelihood. We applied the method to a high-throughput, multicellular in vitro Ca2+ imaging dataset obtained from the CA3 region of a rat hippocampus, and then evaluated the reliability of connectivity estimates using a statistical test based on a surrogate method. Our findings based on the estimated connectivity were in good agreement with currently available physiological knowledge, suggesting our method can elucidate undiscovered functions of neuron-glia systems.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Neuroglía / Calcio / Biología Computacional / Región CA3 Hipocampal / Neuronas Tipo de estudio: Prognostic_studies / Risk_factors_studies Límite: Animals Idioma: En Revista: PLoS Comput Biol Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2014 Tipo del documento: Article País de afiliación: Japón

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Neuroglía / Calcio / Biología Computacional / Región CA3 Hipocampal / Neuronas Tipo de estudio: Prognostic_studies / Risk_factors_studies Límite: Animals Idioma: En Revista: PLoS Comput Biol Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2014 Tipo del documento: Article País de afiliación: Japón
...