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Ligation-free ribosome profiling of cell type-specific translation in the brain.
Hornstein, Nicholas; Torres, Daniela; Das Sharma, Sohani; Tang, Guomei; Canoll, Peter; Sims, Peter A.
Afiliación
  • Hornstein N; Department of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA.
  • Torres D; Columbia University M.D./Ph.D. Program, Columbia University Medical Center, New York, NY, 10032, USA.
  • Das Sharma S; Graduate Ph.D. Program in Pharmacology and Molecular Signaling, Columbia University Medical Center, New York, NY, 10032, USA.
  • Tang G; Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, 10032, USA.
  • Canoll P; Department of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA.
  • Sims PA; Department of Neurology, Columbia University Medical Center, New York, NY, 10032, USA.
Genome Biol ; 17(1): 149, 2016 07 05.
Article en En | MEDLINE | ID: mdl-27380875
Ribosome profiling has emerged as a powerful tool for genome-wide measurements of translation, but library construction requires multiple ligation steps and remains cumbersome relative to more conventional deep-sequencing experiments. We report a new, ligation-free approach to ribosome profiling that does not require ligation. Library construction for ligation-free ribosome profiling can be completed in one day with as little as 1 ng of purified RNA footprints. We apply ligation-free ribosome profiling to mouse brain tissue to identify new patterns of cell type-specific translation and test its ability to identify translational targets of mTOR signaling in the brain.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Ribosomas / ARN / Serina-Treonina Quinasas TOR / Secuenciación de Nucleótidos de Alto Rendimiento Límite: Animals Idioma: En Revista: Genome Biol Asunto de la revista: BIOLOGIA MOLECULAR / GENETICA Año: 2016 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Ribosomas / ARN / Serina-Treonina Quinasas TOR / Secuenciación de Nucleótidos de Alto Rendimiento Límite: Animals Idioma: En Revista: Genome Biol Asunto de la revista: BIOLOGIA MOLECULAR / GENETICA Año: 2016 Tipo del documento: Article País de afiliación: Estados Unidos
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