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Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria.
Riniker, Sereina; Landrum, Gregory A; Montanari, Floriane; Villalba, Santiago D; Maier, Julie; Jansen, Johanna M; Walters, W Patrick; Shelat, Anang A.
Afiliación
  • Riniker S; Laboratory of Physical Chemistry, ETH Zürich, Zürich, Switzerland.
  • Landrum GA; T5 Informatics GmbH, Basel, Switzerland.
  • Montanari F; Pharmacoinformatics Research Group, Department of Pharmaceutical Chemistry, University of Vienna, Vienna, Austria.
  • Villalba SD; IMP - Research Institute of Molecular Pathology, Vienna Biocenter, Vienna, Austria.
  • Maier J; Department of Chemical Biology & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
  • Jansen JM; Department of Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Emeryville, CA, USA.
  • Walters WP; Relay Therapeutics, Cambridge, MA, USA.
  • Shelat AA; Department of Chemical Biology & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
F1000Res ; 6: 1136, 2017.
Article en En | MEDLINE | ID: mdl-28928948
The first challenge in the 2014 competition launched by the Teach-Discover-Treat (TDT) initiative asked for the development of a tutorial for ligand-based virtual screening, based on data from a primary phenotypic high-throughput screen (HTS) against malaria. The resulting Workflows were applied to select compounds from a commercial database, and a subset of those were purchased and tested experimentally for anti-malaria activity. Here, we present the two most successful Workflows, both using machine-learning approaches, and report the results for the 114 compounds tested in the follow-up screen. Excluding the two known anti-malarials quinidine and amodiaquine and 31 compounds already present in the primary HTS, a high hit rate of 57% was found.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Contexto en salud: 3_ND Problema de salud: 3_malaria / 3_neglected_diseases Tipo de estudio: Diagnostic_studies / Screening_studies Idioma: En Revista: F1000Res Año: 2017 Tipo del documento: Article País de afiliación: Suiza

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Contexto en salud: 3_ND Problema de salud: 3_malaria / 3_neglected_diseases Tipo de estudio: Diagnostic_studies / Screening_studies Idioma: En Revista: F1000Res Año: 2017 Tipo del documento: Article País de afiliación: Suiza
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