Targeted mutagenesis: A sniper-like diversity generator in microbial engineering.
Synth Syst Biotechnol
; 2(2): 75-86, 2017 Jun.
Article
en En
| MEDLINE
| ID: mdl-29062964
Mutations, serving as the raw materials of evolution, have been extensively utilized to increase the chances of engineering molecules or microbes with tailor-made functions. Global and targeted mutagenesis are two main methods of obtaining various mutations, distinguished by the range of action they can cover. While the former one stresses the mining of novel genetic loci within the whole genomic background, targeted mutagenesis performs in a more straightforward manner, bringing evolutionary escape and error catastrophe under control. In this review, we classify the existing techniques of targeted mutagenesis into two categories in terms of whether the diversity is generated in vitro or in vivo, and briefly introduce the mechanisms and applications of them separately. The inherent connections and development trends of the two classes are also discussed to provide an insight into the next generation evolution research.
3'-LTR, 3'-long terminal repeat; 5-FOA, 5-fluoro-orotic acid; CRISPR/Cas9, clustered regularly interspaced short palindromic repeats and associated protein 9; DNA Pol III, DNA polymerase III; DNA PolI, DNA polymerase I; DSB, double strand break; Evolution; FLASH, fast ligation-based automatable solid-phase high-throughput; HDR, homology-directed repair; HIV, human immunodeficiency virus; ICE, in vivo continuous evolution; LIC, ligation-independent cloning; MAGE, multiplex automated genome engineering; MMEJ, microhomology-mediated end-joining; Mutations; NHEJ, error-prone non-homologous end-joining; ORF, open reading frame; PAM, protospacer-adjacent motif; RVD, repeat variable di-residue; Synthetic biology; TALE, transcription activator-like effector; TALEN, transcription activator-like effector nuclease; TP, terminal protein; TP-DNAP, TP-DNA polymerase fusion; TaGTEAM, targeting glycosylase to embedded arrays for mutagenesis; Targeted mutagenesis; YOGE, yeast oligo-mediated genome engineering; ZF, zinc-finger protein; ZFN, zinc-finger nuclease; dCas9, catalytically dead Cas9; dNTP, deoxy-ribonucleoside triphosphate; dsDNA, double-stranded DNA; error-prone PCR, error-prone polymerase chain reaction; non-GMO, non-genetically modified organism; pre-crRNA, pre-CRISPR RNA; sctetR, single chain tetR; sgRNA, single-guide RNA; ssDNA, single-stranded DNA; tracrRNA, trans-encoded RNA
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1
Colección:
01-internacional
Base de datos:
MEDLINE
Idioma:
En
Revista:
Synth Syst Biotechnol
Año:
2017
Tipo del documento:
Article
País de afiliación:
China