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Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.
Varshney, Rajeev K; Thudi, Mahendar; Roorkiwal, Manish; He, Weiming; Upadhyaya, Hari D; Yang, Wei; Bajaj, Prasad; Cubry, Philippe; Rathore, Abhishek; Jian, Jianbo; Doddamani, Dadakhalandar; Khan, Aamir W; Garg, Vanika; Chitikineni, Annapurna; Xu, Dawen; Gaur, Pooran M; Singh, Narendra P; Chaturvedi, Sushil K; Nadigatla, Gangarao V P R; Krishnamurthy, Lakshmanan; Dixit, G P; Fikre, Asnake; Kimurto, Paul K; Sreeman, Sheshshayee M; Bharadwaj, Chellapilla; Tripathi, Shailesh; Wang, Jun; Lee, Suk-Ha; Edwards, David; Polavarapu, Kavi Kishor Bilhan; Penmetsa, R Varma; Crossa, José; Nguyen, Henry T; Siddique, Kadambot H M; Colmer, Timothy D; Sutton, Tim; von Wettberg, Eric; Vigouroux, Yves; Xu, Xun; Liu, Xin.
Afiliación
  • Varshney RK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India. r.k.varshney@cgiar.org.
  • Thudi M; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Roorkiwal M; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • He W; BGI-Shenzhen, Shenzhen, China.
  • Upadhyaya HD; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Yang W; BGI-Shenzhen, Shenzhen, China.
  • Bajaj P; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Cubry P; Institut de Recherche pour le Développement (IRD), University of Montpellier, Montpellier, France.
  • Rathore A; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Jian J; BGI-Shenzhen, Shenzhen, China.
  • Doddamani D; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Khan AW; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Garg V; The University of Western Australia (UWA), Crawley, Western Australia, Australia.
  • Chitikineni A; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Xu D; Osmania University, Hyderabad, India.
  • Gaur PM; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Singh NP; BGI-Shenzhen, Shenzhen, China.
  • Chaturvedi SK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Nadigatla GVPR; Indian Council of Agricultural Research (ICAR), Indian Institute of Pulses Research (IIPR), Kanpur, India.
  • Krishnamurthy L; Indian Council of Agricultural Research (ICAR), Indian Institute of Pulses Research (IIPR), Kanpur, India.
  • Dixit GP; Rani Lakshmi Bai Central Agricultural University, Jhansi, India.
  • Fikre A; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Nairobi, Kenya.
  • Kimurto PK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Sreeman SM; Indian Council of Agricultural Research (ICAR), Indian Institute of Pulses Research (IIPR), Kanpur, India.
  • Bharadwaj C; Ethiopian Institute of Agricultural Research (EIAR), Debre Ziet, Ethiopia.
  • Tripathi S; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Addis Ababa, Ethiopia.
  • Wang J; Egerton University, Njoro, Kenya.
  • Lee SH; University of Agricultural Sciences-Bangalore, Bangalore, India.
  • Edwards D; ICAR-Indian Agricultural Research Institute (IARI), New Delhi, India.
  • Polavarapu KKB; ICAR-Indian Agricultural Research Institute (IARI), New Delhi, India.
  • Penmetsa RV; BGI-Shenzhen, Shenzhen, China.
  • Crossa J; iCarbonX, Shenzhen, China.
  • Nguyen HT; Seoul National University, Seoul, South Korea.
  • Siddique KHM; The University of Western Australia (UWA), Crawley, Western Australia, Australia.
  • Colmer TD; Osmania University, Hyderabad, India.
  • Sutton T; University of California-Davis, Davis, CA, USA.
  • von Wettberg E; International Maize and Wheat Improvement Center (CIMMYT), Mexico, Mexico.
  • Vigouroux Y; University of Missouri, National Center for Soybean Biotechnology, Columbia, SC, USA.
  • Xu X; The University of Western Australia (UWA), Crawley, Western Australia, Australia.
  • Liu X; The University of Western Australia (UWA), Crawley, Western Australia, Australia.
Nat Genet ; 51(5): 857-864, 2019 05.
Article en En | MEDLINE | ID: mdl-31036963
ABSTRACT
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate regions with 204 genes under selection during chickpea breeding. Our data suggest the Eastern Mediterranean as the primary center of origin and migration route of chickpea from the Mediterranean/Fertile Crescent to Central Asia, and probably in parallel from Central Asia to East Africa (Ethiopia) and South Asia (India). Genome-wide association studies identified 262 markers and several candidate genes for 13 traits. Our study establishes a foundation for large-scale characterization of germplasm and population genomics, and a resource for trait dissection, accelerating genetic gains in future chickpea breeding.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Cicer Tipo de estudio: Prognostic_studies Idioma: En Revista: Nat Genet Asunto de la revista: GENETICA MEDICA Año: 2019 Tipo del documento: Article País de afiliación: India
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Cicer Tipo de estudio: Prognostic_studies Idioma: En Revista: Nat Genet Asunto de la revista: GENETICA MEDICA Año: 2019 Tipo del documento: Article País de afiliación: India