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Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing.
Valliyodan, Babu; Brown, Anne V; Wang, Juexin; Patil, Gunvant; Liu, Yang; Otyama, Paul I; Nelson, Rex T; Vuong, Tri; Song, Qijian; Musket, Theresa A; Wagner, Ruth; Marri, Pradeep; Reddy, Sam; Sessions, Allen; Wu, Xiaolei; Grant, David; Bayer, Philipp E; Roorkiwal, Manish; Varshney, Rajeev K; Liu, Xin; Edwards, David; Xu, Dong; Joshi, Trupti; Cannon, Steven B; Nguyen, Henry T.
Afiliación
  • Valliyodan B; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, 65211, USA.
  • Brown AV; Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City, MO, 65101, USA.
  • Wang J; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA, 50011, USA.
  • Patil G; Department of Electrical Engineering and Computer Science, and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA.
  • Liu Y; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, 65211, USA.
  • Otyama PI; Institute of Genomics for Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock, TX, 79409, USA.
  • Nelson RT; MU Institute of Data Science and Informatics, University of Missouri, Columbia, MO, 65211, USA.
  • Vuong T; Department of Agronomy, Iowa State University, Ames, IA, 50011, USA.
  • Song Q; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA, 50011, USA.
  • Musket TA; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, 65211, USA.
  • Wagner R; USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD, 20705, USA.
  • Marri P; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, 65211, USA.
  • Reddy S; Bayer CropScience, St. Louis, MO, 63141, USA.
  • Sessions A; Corteva Agriscience, Indianapolis, IN, 46268, USA.
  • Wu X; Pairwise Plants LLC, Durham, NC, 27709, USA.
  • Grant D; Corteva Agriscience, Indianapolis, IN, 46268, USA.
  • Bayer PE; Bayer CropScience, Research Triangle Park, NC, 27709, USA.
  • Roorkiwal M; Bayer CropScience, Research Triangle Park, NC, 27709, USA.
  • Varshney RK; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA, 50011, USA.
  • Liu X; Department of Agronomy, Iowa State University, Ames, IA, 50011, USA.
  • Edwards D; School of Biological Sciences, The University of Western Australia, Perth, WA, 6009, Australia.
  • Xu D; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, Telangana, 502324, India.
  • Joshi T; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, Telangana, 502324, India.
  • Cannon SB; Beijing Genomics Institute-Shenzhen, Shenzhen, 518083, China.
  • Nguyen HT; State Key Laboratory of Agricultural Genomics, China National GeneBank, BGI-Shenzhen, Shenzhen, 518083, China.
Sci Data ; 8(1): 50, 2021 02 08.
Article en En | MEDLINE | ID: mdl-33558550
ABSTRACT
We report characteristics of soybean genetic diversity and structure from the resequencing of 481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 cultivated (Glycine max) varieties (landraces and elites). This data was used to identify 7.8 million SNPs, to predict SNP effects relative to genic regions, and to identify the genetic structure, relationships, and linkage disequilibrium. We found evidence of distinct, mostly independent selection of lineages by particular geographic location. Among cultivated varieties, we identified numerous highly conserved regions, suggesting selection during domestication. Comparisons of these accessions against the whole U.S. germplasm genotyped with the SoySNP50K iSelect BeadChip revealed that over 95% of the re-sequenced accessions have a high similarity to their SoySNP50K counterparts. Probable errors in seed source or genotype tracking were also identified in approximately 5% of the accessions.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Glycine max / Genoma de Planta / Polimorfismo de Nucleótido Simple Tipo de estudio: Prognostic_studies Idioma: En Revista: Sci Data Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Glycine max / Genoma de Planta / Polimorfismo de Nucleótido Simple Tipo de estudio: Prognostic_studies Idioma: En Revista: Sci Data Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos