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A series of developmental validation tests for Number of Contributors platforms: Exemplars using NOCIt and a neural network.
Valtl, Jakob; Mönich, Ullrich J; Lun, Desmond S; Kelley, James; Grgicak, Catherine M.
Afiliación
  • Valtl J; Lehrstuhl für Theoretische Informationstechnik, Technische Universität München, 80333 Munich, Germany.
  • Mönich UJ; Lehrstuhl für Theoretische Informationstechnik, Technische Universität München, 80333 Munich, Germany.
  • Lun DS; Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA; Department of Computer Science, Rutgers University, Camden, NJ 08102, USA; Department of Plant Biology, Rutgers University, New Brunswick, NJ 08901, USA.
  • Kelley J; Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA.
  • Grgicak CM; Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA; Department of Chemistry, Rutgers University, Camden, NJ 08102, USA. Electronic address: c.grgicak@rutgers.edu.
Forensic Sci Int Genet ; 54: 102556, 2021 09.
Article en En | MEDLINE | ID: mdl-34225042
ABSTRACT
Complex DNA mixtures are challenging to interpret and require computational tools that aid in that interpretation. Recently, several computational methods that estimate the number of contributors (NOC) to a sample have been developed. Unlike analogous tools that interpret profiles and report LRs, NOC tools vary widely in their operational principle where some are Bayesian and others are machine learning tools. Conjunctionally, NOC tools may return a single n estimate, or a distribution on n. This vast array of constructs, coupled with a gap in standardized methods by which to validate NOC systems, warrants an exploration into the measures by which differing NOC systems might be tested for operations. In the current paper, we use two exemplar NOC systems a probabilistic system named NOCIt, which renders an a posteriori probability (APP) distribution on the number of contributors given an electropherogram and an artificial neural network (ANN). NOCIt is a continuous Bayesian inference system incorporating models of peak height, degradation, differential degradation, forward and reverse stutter, noise and allelic drop-out while considering allele frequencies in a reference population. The ANN is also a continuous method, taking all the same features (barring degradation) into account. Unlike its Bayesian counterpart, it demands substantively more data to parameterize, requiring synthetic data. We explore each system's performance by conducting tests on 214 PROVEDIt mixtures where the limit of detection was 1-copy of DNA. We found that after a lengthy training period of approximately 24 h, the ANN's evaluation process was very fast and perfectly repeatable. In contrast, NOCIt only took a few minutes to train but took tens of minutes to complete each sample and was less repeatable. In addition, it rendered a probability distribution that was more sensitive and specific, affording a reasonable method by which to report all reasonable n that explain the evidence for a given sample. Whatever the method, by acknowledging the inherent differences between NOC systems, we demonstrate that validation constructs will necessarily be guided by the needs of the forensic domain and be dependent upon whether the laboratory seeks to assign a single n or range of n.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Dermatoglifia del ADN / Repeticiones de Microsatélite Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Forensic Sci Int Genet Asunto de la revista: GENETICA / JURISPRUDENCIA Año: 2021 Tipo del documento: Article País de afiliación: Alemania

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Dermatoglifia del ADN / Repeticiones de Microsatélite Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Forensic Sci Int Genet Asunto de la revista: GENETICA / JURISPRUDENCIA Año: 2021 Tipo del documento: Article País de afiliación: Alemania
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