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Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis.
Wang, Yanlin; Wang, Yixin; Yang, Yujia; Ni, Gang; Li, Yulong; Chen, Muyan.
Afiliación
  • Wang Y; The Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China.
  • Wang Y; The Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China.
  • Yang Y; The Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China.
  • Ni G; The Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China.
  • Li Y; CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China. lyl@qdio.ac.cn.
  • Chen M; The Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, 266003, China. chenmuyan@ouc.edu.cn.
Sci Data ; 10(1): 767, 2023 11 04.
Article en En | MEDLINE | ID: mdl-37925473
Asterias amurensis has attracted widespread concern because of its population outbreaks, which has impacted fisheries and aquaculture, as well as disrupting local ecosystems. A high-quality reference genome is necessary to better investigate mechanisms of outbreak and adaptive changes. Combining PacBio HiFi and Hi-C sequencing data, we generated a chromosome-level A. amurensis genome with a size of 491.53 Mb. The contig N50 and scaffold N50 were 8.05 and 23.75 Mb, respectively. The result of BUSCO analysis revealed a completeness score of 98.85%. A total of 16,531 protein-coding genes were predicted in the genome, of which 94.63% were functionally annotated. The high-quality genome assembly resulting from this study will provide a valuable genetic resource for future research on the mechanism of population outbreaks and invasion ecology.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma / Asterias Límite: Animals Idioma: En Revista: Sci Data Año: 2023 Tipo del documento: Article País de afiliación: China

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma / Asterias Límite: Animals Idioma: En Revista: Sci Data Año: 2023 Tipo del documento: Article País de afiliación: China
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