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Understanding metric-related pitfalls in image analysis validation.
Reinke, Annika; Tizabi, Minu D; Baumgartner, Michael; Eisenmann, Matthias; Heckmann-Nötzel, Doreen; Kavur, A Emre; Rädsch, Tim; Sudre, Carole H; Acion, Laura; Antonelli, Michela; Arbel, Tal; Bakas, Spyridon; Benis, Arriel; Buettner, Florian; Cardoso, M Jorge; Cheplygina, Veronika; Chen, Jianxu; Christodoulou, Evangelia; Cimini, Beth A; Farahani, Keyvan; Ferrer, Luciana; Galdran, Adrian; van Ginneken, Bram; Glocker, Ben; Godau, Patrick; Hashimoto, Daniel A; Hoffman, Michael M; Huisman, Merel; Isensee, Fabian; Jannin, Pierre; Kahn, Charles E; Kainmueller, Dagmar; Kainz, Bernhard; Karargyris, Alexandros; Kleesiek, Jens; Kofler, Florian; Kooi, Thijs; Kopp-Schneider, Annette; Kozubek, Michal; Kreshuk, Anna; Kurc, Tahsin; Landman, Bennett A; Litjens, Geert; Madani, Amin; Maier-Hein, Klaus; Martel, Anne L; Meijering, Erik; Menze, Bjoern; Moons, Karel G M; Müller, Henning.
Afiliación
  • Reinke A; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany. a.reinke@dkfz-heidelberg.de.
  • Tizabi MD; German Cancer Research Center (DKFZ) Heidelberg, HI Helmholtz Imaging, Heidelberg, Germany. a.reinke@dkfz-heidelberg.de.
  • Baumgartner M; Faculty of Mathematics and Computer Science, Heidelberg University, Heidelberg, Germany. a.reinke@dkfz-heidelberg.de.
  • Eisenmann M; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany. m.tizabi@dkfz-heidelberg.de.
  • Heckmann-Nötzel D; National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and University Medical Center Heidelberg, Heidelberg, Germany. m.tizabi@dkfz-heidelberg.de.
  • Kavur AE; German Cancer Research Center (DKFZ) Heidelberg, Division of Medical Image Computing, Heidelberg, Germany.
  • Rädsch T; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany.
  • Sudre CH; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany.
  • Acion L; National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and University Medical Center Heidelberg, Heidelberg, Germany.
  • Antonelli M; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany.
  • Arbel T; German Cancer Research Center (DKFZ) Heidelberg, Division of Medical Image Computing, Heidelberg, Germany.
  • Bakas S; German Cancer Research Center (DKFZ) Heidelberg, HI Applied Computer Vision Lab, Heidelberg, Germany.
  • Benis A; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany.
  • Buettner F; German Cancer Research Center (DKFZ) Heidelberg, HI Helmholtz Imaging, Heidelberg, Germany.
  • Cardoso MJ; MRC Unit for Lifelong Health and Ageing at UCL and Centre for Medical Image Computing, Department of Computer Science, University College London, London, UK.
  • Cheplygina V; School of Biomedical Engineering and Imaging Science, King's College London, London, UK.
  • Chen J; Instituto de Cálculo, CONICET - Universidad de Buenos Aires, Buenos Aires, Argentina.
  • Christodoulou E; School of Biomedical Engineering and Imaging Science, King's College London, London, UK.
  • Cimini BA; Centre for Medical Image Computing, University College London, London, UK.
  • Farahani K; Centre for Intelligent Machines and MILA (Quebec Artificial Intelligence Institute), McGill University, Montréal, Quebec, Canada.
  • Ferrer L; Division of Computational Pathology, Dept of Pathology & Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
  • Galdran A; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • van Ginneken B; Department of Digital Medical Technologies, Holon Institute of Technology, Holon, Israel.
  • Glocker B; European Federation for Medical Informatics, Le Mont-sur-Lausanne, Switzerland.
  • Godau P; German Cancer Consortium (DKTK), partner site Frankfurt/Mainz, a partnership between DKFZ and UCT Frankfurt-Marburg, Frankfurt am Main, Germany.
  • Hashimoto DA; German Cancer Research Center (DKFZ) Heidelberg, Heidelberg, Germany.
  • Hoffman MM; Goethe University Frankfurt, Department of Medicine, Frankfurt am Main, Germany.
  • Huisman M; Goethe University Frankfurt, Department of Informatics, Frankfurt am Main, Germany.
  • Isensee F; Frankfurt Cancer Insititute, Frankfurt am Main, Germany.
  • Jannin P; School of Biomedical Engineering and Imaging Science, King's College London, London, UK.
  • Kahn CE; Department of Computer Science, IT University of Copenhagen, Copenhagen, Denmark.
  • Kainmueller D; Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany.
  • Kainz B; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany.
  • Karargyris A; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Kleesiek J; Center for Biomedical Informatics and Information Technology, National Cancer Institute, Bethesda, MD, USA.
  • Kofler F; Instituto de Investigación en Ciencias de la Computación (ICC), CONICET-UBA, Ciudad Autónoma de Buenos Aires, Buenos Aires, Argentina.
  • Kooi T; Universitat Pompeu Fabra, Barcelona, Spain.
  • Kopp-Schneider A; University of Adelaide, Adelaide, South Australia, Australia.
  • Kozubek M; Fraunhofer MEVIS, Bremen, Germany.
  • Kreshuk A; Radboud Institute for Health Sciences, Radboud University Medical Center, Nijmegen, the Netherlands.
  • Kurc T; Department of Computing, Imperial College London, South Kensington Campus, London, UK.
  • Landman BA; German Cancer Research Center (DKFZ) Heidelberg, Division of Intelligent Medical Systems, Heidelberg, Germany.
  • Litjens G; Faculty of Mathematics and Computer Science, Heidelberg University, Heidelberg, Germany.
  • Madani A; National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and University Medical Center Heidelberg, Heidelberg, Germany.
  • Maier-Hein K; Department of Surgery, Perelman School of Medicine, Philadelphia, PA, USA.
  • Martel AL; General Robotics Automation Sensing and Perception Laboratory, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA, USA.
  • Meijering E; Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
  • Menze B; Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.
  • Moons KGM; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.
  • Müller H; Vector Institute for Artificial Intelligence, Toronto, Ontario, Canada.
Nat Methods ; 21(2): 182-194, 2024 Feb.
Article en En | MEDLINE | ID: mdl-38347140
ABSTRACT
Validation metrics are key for tracking scientific progress and bridging the current chasm between artificial intelligence research and its translation into practice. However, increasing evidence shows that, particularly in image analysis, metrics are often chosen inadequately. Although taking into account the individual strengths, weaknesses and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multistage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides a reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. Although focused on biomedical image analysis, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. The work serves to enhance global comprehension of a key topic in image analysis validation.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Inteligencia Artificial Idioma: En Revista: Nat Methods Asunto de la revista: TECNICAS E PROCEDIMENTOS DE LABORATORIO Año: 2024 Tipo del documento: Article País de afiliación: Alemania

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Inteligencia Artificial Idioma: En Revista: Nat Methods Asunto de la revista: TECNICAS E PROCEDIMENTOS DE LABORATORIO Año: 2024 Tipo del documento: Article País de afiliación: Alemania
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