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Genomes of multicellular algal sisters to land plants illuminate signaling network evolution.
Feng, Xuehuan; Zheng, Jinfang; Irisarri, Iker; Yu, Huihui; Zheng, Bo; Ali, Zahin; de Vries, Sophie; Keller, Jean; Fürst-Jansen, Janine M R; Dadras, Armin; Zegers, Jaccoline M S; Rieseberg, Tim P; Dhabalia Ashok, Amra; Darienko, Tatyana; Bierenbroodspot, Maaike J; Gramzow, Lydia; Petroll, Romy; Haas, Fabian B; Fernandez-Pozo, Noe; Nousias, Orestis; Li, Tang; Fitzek, Elisabeth; Grayburn, W Scott; Rittmeier, Nina; Permann, Charlotte; Rümpler, Florian; Archibald, John M; Theißen, Günter; Mower, Jeffrey P; Lorenz, Maike; Buschmann, Henrik; von Schwartzenberg, Klaus; Boston, Lori; Hayes, Richard D; Daum, Chris; Barry, Kerrie; Grigoriev, Igor V; Wang, Xiyin; Li, Fay-Wei; Rensing, Stefan A; Ben Ari, Julius; Keren, Noa; Mosquna, Assaf; Holzinger, Andreas; Delaux, Pierre-Marc; Zhang, Chi; Huang, Jinling; Mutwil, Marek; de Vries, Jan; Yin, Yanbin.
Afiliación
  • Feng X; Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
  • Zheng J; Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
  • Irisarri I; Zhejiang Lab, Hanzhou, China.
  • Yu H; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Zheng B; Campus Institute Data Science, University of Goettingen, Goettingen, Germany.
  • Ali Z; Section Phylogenomics, Centre for Molecular biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Zoological Museum Hamburg, Hamburg, Germany.
  • de Vries S; University of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE, USA.
  • Keller J; Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Science, Yunnan, China.
  • Fürst-Jansen JMR; Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
  • Dadras A; Nanyang Technological University, School of Biological Sciences, Singapore, Singapore.
  • Zegers JMS; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Rieseberg TP; Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, France.
  • Dhabalia Ashok A; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Darienko T; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Bierenbroodspot MJ; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Gramzow L; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Petroll R; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Haas FB; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Fernandez-Pozo N; Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
  • Nousias O; University of Jena, Matthias Schleiden Institute/Genetics, Jena, Germany.
  • Li T; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.
  • Fitzek E; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
  • Grayburn WS; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.
  • Rittmeier N; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
  • Permann C; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.
  • Rümpler F; Institute for Mediterranean and Subtropical Horticulture 'La Mayora', Málaga, Spain.
  • Archibald JM; Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
  • Theißen G; Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
  • Mower JP; Computational Biology, Department of Biology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
  • Lorenz M; Northern Illinois University, Molecular Core Lab, Department of Biological Sciences, DeKalb, IL, USA.
  • Buschmann H; University of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Innsbruck, Austria.
  • von Schwartzenberg K; University of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Innsbruck, Austria.
  • Boston L; University of Jena, Matthias Schleiden Institute/Genetics, Jena, Germany.
  • Hayes RD; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
  • Daum C; University of Jena, Matthias Schleiden Institute/Genetics, Jena, Germany.
  • Barry K; University of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE, USA.
  • Grigoriev IV; University of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Experimental Phycology and Culture Collection of Algae at Goettingen University, Goettingen, Germany.
  • Wang X; University of Applied Sciences Mittweida, Faculty of Applied Computer Sciences and Biosciences, Section Biotechnology and Chemistry, Molecular Biotechnology, Mittweida, Germany.
  • Li FW; Universität Hamburg, Institute of Plant Science and Microbiology, Microalgae and Zygnematophyceae Collection Hamburg and Aquatic Ecophysiology and Phycology, Hamburg, Germany.
  • Rensing SA; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Ben Ari J; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Keren N; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Mosquna A; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Holzinger A; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Delaux PM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Zhang C; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA.
  • Huang J; North China University of Science and Technology, Tangshan, China.
  • Mutwil M; Boyce Thompson Institute, Ithaca, NY, USA.
  • de Vries J; Plant Biology Section, Cornell University, Ithaca, NY, USA.
  • Yin Y; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.
Nat Genet ; 56(5): 1018-1031, 2024 May.
Article en En | MEDLINE | ID: mdl-38693345
ABSTRACT
Zygnematophyceae are the algal sisters of land plants. Here we sequenced four genomes of filamentous Zygnematophyceae, including chromosome-scale assemblies for three strains of Zygnema circumcarinatum. We inferred traits in the ancestor of Zygnematophyceae and land plants that might have ushered in the conquest of land by plants expanded genes for signaling cascades, environmental response, and multicellular growth. Zygnematophyceae and land plants share all the major enzymes for cell wall synthesis and remodifications, and gene gains shaped this toolkit. Co-expression network analyses uncover gene cohorts that unite environmental signaling with multicellular developmental programs. Our data shed light on a molecular chassis that balances environmental response and growth modulation across more than 600 million years of streptophyte evolution.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Filogenia / Transducción de Señal / Evolución Molecular / Embryophyta Idioma: En Revista: Nat Genet Asunto de la revista: GENETICA MEDICA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Filogenia / Transducción de Señal / Evolución Molecular / Embryophyta Idioma: En Revista: Nat Genet Asunto de la revista: GENETICA MEDICA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos