FishTEDB 2.0: an update fish transposable element (TE) database with new functions to facilitate TE research.
Database (Oxford)
; 20242024 Jun 03.
Article
en En
| MEDLINE
| ID: mdl-38829853
ABSTRACT
We launched the initial version of FishTEDB in 2018, which aimed to establish an open-source, user-friendly, data-rich transposable element (TE) database. Over the past 5 years, FishTEDB 1.0 has gained approximately 10 000 users, accumulating more than 450 000 interactions. With the unveiling of extensive fish genome data and the increasing emphasis on TE research, FishTEDB needs to extend the richness of data and functions. To achieve the above goals, we introduced 33 new fish species to FishTEDB 2.0, encompassing a wide array of fish belonging to 48 orders. To make the updated database more functional, we added a genome browser to visualize the positional relationship between TEs and genes and the estimated TE insertion time in different species. In conclusion, we released a new version of the fish TE database, FishTEDB 2.0, designed to assist researchers in the future study of TE functions and promote the progress of biological theories related to TEs. Database URL https//www.fishtedb.com/.
Texto completo:
1
Colección:
01-internacional
Base de datos:
MEDLINE
Asunto principal:
Elementos Transponibles de ADN
/
Bases de Datos Genéticas
/
Peces
Límite:
Animals
Idioma:
En
Revista:
Database (Oxford)
Año:
2024
Tipo del documento:
Article
País de afiliación:
China