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Siberian sturgeon multi-tissue reference transcriptome database.
Klopp, Christophe; Cabau, Cédric; Greif, Gonzalo; Lasalle, André; Di Landro, Santiago; Vizziano-Cantonnet, Denise.
Afiliação
  • Klopp C; SIGENAE, Genotoul Bioinfo, MIAT UR875, INRAe, Chemin de Borde-Rouge - Auzeville BP 52627, 31326 CASTANET-TOLOSAN CEDEX, France.
  • Cabau C; SIGENAE, GenPhySE, Université de Toulouse, INRAe, ENVT, Chemin de Borde-Rouge - Auzeville BP 52627, 31326 CASTANET-TOLOSAN CEDEX, France.
  • Greif G; Laboratorio de Interacción Hospedero-Patógeno/Unidad de Biología Molecular, Instituto Pasteur de Montevideo, Mataojo 2020, Montevideo 11400, Uruguay.
  • Lasalle A; Laboratorio de Fisiología de la Reproducción y Ecología de Peces, Instituto de Biología, Facultad de Ciencias, Universidad de la República Oriental del Uruguay, Iguá 4225, Montevideo 11 400, Uruguay.
  • Di Landro S; Laboratorio de Fisiología de la Reproducción y Ecología de Peces, Instituto de Biología, Facultad de Ciencias, Universidad de la República Oriental del Uruguay, Iguá 4225, Montevideo 11 400, Uruguay.
  • Vizziano-Cantonnet D; Laboratorio de Fisiología de la Reproducción y Ecología de Peces, Instituto de Biología, Facultad de Ciencias, Universidad de la República Oriental del Uruguay, Iguá 4225, Montevideo 11 400, Uruguay.
Database (Oxford) ; 20202020 11 25.
Article em En | MEDLINE | ID: mdl-33238003
MOTIVATION: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. RESULTS: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. AVAILABILITY: The database is publicly available at http://siberiansturgeontissuedb.sigenae.org Supplementary information:  Supplementary data are available at Database online.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Transcriptoma / Peixes Limite: Animals Idioma: En Revista: Database (Oxford) Ano de publicação: 2020 Tipo de documento: Article País de afiliação: França

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Transcriptoma / Peixes Limite: Animals Idioma: En Revista: Database (Oxford) Ano de publicação: 2020 Tipo de documento: Article País de afiliação: França
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