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The bowfin genome illuminates the developmental evolution of ray-finned fishes.
Thompson, Andrew W; Hawkins, M Brent; Parey, Elise; Wcisel, Dustin J; Ota, Tatsuya; Kawasaki, Kazuhiko; Funk, Emily; Losilla, Mauricio; Fitch, Olivia E; Pan, Qiaowei; Feron, Romain; Louis, Alexandra; Montfort, Jérôme; Milhes, Marine; Racicot, Brett L; Childs, Kevin L; Fontenot, Quenton; Ferrara, Allyse; David, Solomon R; McCune, Amy R; Dornburg, Alex; Yoder, Jeffrey A; Guiguen, Yann; Roest Crollius, Hugues; Berthelot, Camille; Harris, Matthew P; Braasch, Ingo.
Afiliação
  • Thompson AW; Department of Integrative Biology, Michigan State University, East Lansing, MI, USA.
  • Hawkins MB; Ecology, Evolution & Behavior Program, Michigan State University, East Lansing, MI, USA.
  • Parey E; Department of Genetics, Harvard Medical School, Boston, MA, USA.
  • Wcisel DJ; Department of Orthopedic Research, Boston Children's Hospital, Boston, MA, USA.
  • Ota T; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.
  • Kawasaki K; Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA.
  • Funk E; Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
  • Losilla M; Department of Molecular Biomedical Sciences, NC State University, Raleigh, NC, USA.
  • Fitch OE; Department of Evolutionary Studies of Biosystems, SOKENDAI (the Graduate University for Advanced Studies), Hayama, Japan.
  • Pan Q; Department of Anthropology, Pennsylvania State University, University Park, PA, USA.
  • Feron R; Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.
  • Louis A; Animal Science Department, University of California Davis, Davis, CA, USA.
  • Montfort J; Department of Integrative Biology, Michigan State University, East Lansing, MI, USA.
  • Milhes M; Ecology, Evolution & Behavior Program, Michigan State University, East Lansing, MI, USA.
  • Racicot BL; Department of Integrative Biology, Michigan State University, East Lansing, MI, USA.
  • Childs KL; Ecology, Evolution & Behavior Program, Michigan State University, East Lansing, MI, USA.
  • Fontenot Q; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
  • Ferrara A; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
  • David SR; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
  • McCune AR; Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
  • Dornburg A; INRAE, LPGP, Rennes, France.
  • Yoder JA; GeT-PlaGe, INRAE, Genotoul, Castanet-Tolosan, France.
  • Guiguen Y; Department of Integrative Biology, Michigan State University, East Lansing, MI, USA.
  • Roest Crollius H; Department of Plant Biology, Michigan State University, East Lansing, MI, USA.
  • Berthelot C; Department of Biological Sciences, Nicholls State University, Thibodaux, LA, USA.
  • Harris MP; Department of Biological Sciences, Nicholls State University, Thibodaux, LA, USA.
  • Braasch I; Department of Biological Sciences, Nicholls State University, Thibodaux, LA, USA.
Nat Genet ; 53(9): 1373-1384, 2021 09.
Article em En | MEDLINE | ID: mdl-34462605
ABSTRACT
The bowfin (Amia calva) is a ray-finned fish that possesses a unique suite of ancestral and derived phenotypes, which are key to understanding vertebrate evolution. The phylogenetic position of bowfin as a representative of neopterygian fishes, its archetypical body plan and its unduplicated and slowly evolving genome make bowfin a central species for the genomic exploration of ray-finned fishes. Here we present a chromosome-level genome assembly for bowfin that enables gene-order analyses, settling long-debated neopterygian phylogenetic relationships. We examine chromatin accessibility and gene expression through bowfin development to investigate the evolution of immune, scale, respiratory and fin skeletal systems and identify hundreds of gene-regulatory loci conserved across vertebrates. These resources connect developmental evolution among bony fishes, further highlighting the bowfin's importance for illuminating vertebrate biology and diversity in the genomic era.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Rajidae / Genoma / Evolução Molecular / Evolução Biológica Limite: Animals Idioma: En Revista: Nat Genet Assunto da revista: GENETICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Estados Unidos
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Rajidae / Genoma / Evolução Molecular / Evolução Biológica Limite: Animals Idioma: En Revista: Nat Genet Assunto da revista: GENETICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Estados Unidos