Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences.
Vet Microbiol
; 262: 109232, 2021 Nov.
Article
em En
| MEDLINE
| ID: mdl-34509701
ABSTRACT
The aim of the investigation was to predict the serotypes of M. haemolytica based on whole genomic sequences with the capsular gene region as target. A total of 22 strains selected to have been serotyped and to represent all serotypes were investigated by whole genomic sequencing. The BIGSdb (Bacterial Isolate Genome Sequence Database) was downloaded and installed on a Linux server. Here the sequence database was setup with unique loci at serotype level. The server allows serotypes of M. haemolytica to be predicted from whole genomic sequences and the service is available to the public for free from https//ivsmlst.sund.root.ku.dk.
Palavras-chave
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Mannheimia haemolytica
/
Genoma Bacteriano
Tipo de estudo:
Prognostic_studies
/
Risk_factors_studies
Limite:
Animals
Idioma:
En
Revista:
Vet Microbiol
Ano de publicação:
2021
Tipo de documento:
Article