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A haplotype-resolved genome assembly of Malus domestica 'Red Fuji'.
Peng, Haixu; Yi, Yating; Li, Jinrong; Qing, You; Zhai, Xuyang; Deng, Yulin; Tian, Ji; Zhang, Jie; Hu, Yujing; Qin, Xiaoxiao; Lu, Yanfen; Yao, Yuncong; Wang, Sen; Zheng, Yi.
Afiliação
  • Peng H; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Yi Y; Bioinformatics Center, Bejing University of Agriculture, Bejing, 102206, China.
  • Li J; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Qing Y; Bioinformatics Center, Bejing University of Agriculture, Bejing, 102206, China.
  • Zhai X; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Deng Y; Bioinformatics Center, Bejing University of Agriculture, Bejing, 102206, China.
  • Tian J; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Zhang J; Bioinformatics Center, Bejing University of Agriculture, Bejing, 102206, China.
  • Hu Y; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Qin X; Bioinformatics Center, Bejing University of Agriculture, Bejing, 102206, China.
  • Lu Y; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Yao Y; Bioinformatics Center, Bejing University of Agriculture, Bejing, 102206, China.
  • Wang S; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
  • Zheng Y; Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Sci Data ; 11(1): 592, 2024 Jun 06.
Article em En | MEDLINE | ID: mdl-38844753
ABSTRACT
The 'Red Fuji' apple (Malus domestica), is one of the most important and popular economic crops worldwide in the fruit industry. Using PacBio HiFi long reads and Hi-C reads, we assembled a high-quality haplotype-resolved genome of 'Red Fuji', with sizes of 668.7 and 668.8 Mb, and N50 sizes of 34.1 and 31.4 Mb. About 97.2% of sequences were anchored in 34 chromosomes. We annotated both haploid genomes, identifying a total of 95,439 protein-coding genes in the two haplotype genomes, with 98% functional annotation. The haplotype-resolved genome of 'Red Fuji' apple stands as a precise benchmark for an array of analyses, such as comparative genomics, transcriptomics, and allelic expression studies. This comprehensive resource is paramount in unraveling variations in allelic expression, advancing quality improvements, and refining breeding efforts.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Haplótipos / Genoma de Planta / Malus Idioma: En Revista: Sci Data Ano de publicação: 2024 Tipo de documento: Article País de afiliação: China
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Haplótipos / Genoma de Planta / Malus Idioma: En Revista: Sci Data Ano de publicação: 2024 Tipo de documento: Article País de afiliação: China