Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 76
Filter
Add more filters








Publication year range
1.
Phys Rev E ; 109(6-1): 064902, 2024 Jun.
Article in English | MEDLINE | ID: mdl-39020947

ABSTRACT

The dense active matter exhibits characteristics reminiscent of traditional glassy phenomena, yet the role of rotational inertia in glass dynamics remains elusive. In this study, we investigate the glass dynamics of chiral active particles influenced by rotational inertia. Rotational inertia endows exponential memory to particle orientation, restricting its alteration and amplifying the effective persistence time. At lower spinning frequencies, the diffusion coefficient exhibits a peak function relative to rotational inertia for shorter persistence times, while it steadily increases with rotational inertia for longer persistence times. In the realm of high-frequency spinning, the impact of rotational inertia on diffusion behavior becomes more pronounced, resulting in a nonmonotonic and intricate relationship between the diffusion coefficient and rotational inertia. Consequently, the introduction of rotational inertia significantly alters the glassy dynamics of chiral active particles, allowing for the control over transitions between fluid and glassy states by modulating rotational inertia. Moreover, our findings indicate that at a specific spinning temperature, there exists an optimal spinning frequency at which the diffusion coefficient attains its maximum value.

2.
Phys Rev E ; 109(4-1): 044143, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38755904

ABSTRACT

The dynamic behaviors, specifically trapping and sorting, of active particles interacting with periodic substrates have garnered significant attention. This study investigates numerically the trapping of soft, deformable particles on a periodic potential substrate, which can be experimentally verified through optical tweezers. The research demonstrates that multiple factors, including the relative size of traps, self-propelled velocity, shape parameters, ratio of particles to traps, and translational diffusion, can influence the trapping effect. Within certain parameter boundaries, it is shown that all particles can be consistently trapped. The research reveals that stable trapping typically occurs at median values of the relative trap size. An increase in the self-propelled velocity, the shape parameter, and the translational diffusion coefficient tends to facilitate the escapement of the particles from the traps. It is noteworthy that particles with larger shape parameters can escape even when the restoring force exceeds the self-propelled force. In addition, as the ratio of particles to traps grows, the fraction of trapped particles steadily reduces. Notably, rigid particles are consistently divided and trapped by traps closely approximating an integer multiple of the particles' area, up until the ratio reaches the aforesaid integer value. These findings can potentially enhance the understanding of the interactive effects between active deformable particles and periodic substrates. Moreover, this work suggests a different experimental approach to sort active particles based on rigidity disparities.

3.
Phys Rev E ; 109(2-1): 024405, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38491669

ABSTRACT

To maximize the survival chances of society members, collective self-organization must balance individual interests with promoting the collective welfare. Although situations where group members have equal optimal values are clear, how varying optimal values impacts group dynamics remains unclear. To address this gap, we conducted a self-optimization study of a binary system incorporating communication-enabled active particles with distinct optimal values. We demonstrate that similar particles will spontaneously aggregate and separate from each other to maximize their individual benefits during the process of self-optimization. Our research shows that both types of particles can produce the optimal field values at low density. However, only one type of particle can achieve the optimal field values at medium density. At high densities, neither type of particle is effective in reaching the optimal field values. Interestingly, we observed that during the self-optimization process, the mixture demixed spontaneously under certain circumstances of mixed particles. Particles with higher optimal values developed into larger clusters, while particles with lower optimal values migrated outside of these clusters, resulting in the separation of the mixture. To achieve this separation, suitable noise intensity, particle density, and the significant difference in optimal values were necessary. Our results provide a more profound comprehension of the self-optimization of synthetic or biological agents' communication and provide valuable insight into separating binary species and mixtures.

4.
Phys Rev E ; 108(3-1): 034218, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37849154

ABSTRACT

Electrical turbulence in the heart is considered the culprit of cardiac disease, including the fatal ventricular fibrillation. Optogenetics is an emerging technology that has the capability to produce action potentials of cardiomyocytes to affect the electric wave propagation in cardiac tissue, thereby possessing the potential to control the turbulence, by shining a rotating spiral pattern onto the tissue. In this paper, we present a method to reorder and synchronize electrical turbulence through optogenetics. A generic two-variable reaction-diffusion model and a simplified three-variable ionic cardiac model are used. We discuss cases involving either global or partial illumination.


Subject(s)
Lighting , Myocytes, Cardiac , Computer Simulation , Action Potentials/physiology , Models, Cardiovascular
5.
Soft Matter ; 19(21): 3849-3858, 2023 May 31.
Article in English | MEDLINE | ID: mdl-37194357

ABSTRACT

The two-dimensional melting of a binary mixture of cell tissues is numerically investigated in the presence of rigidity disparity. We present the full melting phase diagrams of the system by using the Voronoi-based cellular model. It is found that the enhancement of rigidity disparity can induce a solid-liquid transition at both zero temperature and finite temperature. (i) In the case of zero temperature, the system undergoes a continuous solid-hexatic transition followed by a continuous hexatic-liquid transition for zero rigidity disparity, but a discontinuous hexatic-liquid transition for finite rigidity disparity. Remarkably, the solid-hexatic transitions always arise when the soft cells reach the rigidity transition point of monodisperse systems. (ii) In the case of finite temperature, the melting occurs via a continuous solid-hexatic transition followed by a discontinuous hexatic-liquid transition. Our study may contribute to the understanding of solid-liquid transitions in binary mixture systems with rigidity disparity.


Subject(s)
Cells , Temperature
6.
Phys Rev E ; 107(2-1): 024406, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36932507

ABSTRACT

There is now growing evidence of collective turbulentlike motion of cells in dense tissues. However, how to control and harness this collective motion is an open question. We investigate the transport of deformable active cells in a periodically asymmetric channel by using a phase-field model. We demonstrate that collective turbulent-like motion of cells can power and steer the macroscopic directional motion through the ratchet channel. The active intercellular forces proportional to the deformation of cells can break thermodynamical equilibrium and induce the directional motion. This directional motion is caused by the ratchet effect rather than the spontaneous symmetry breaking. The motion direction is determined by the asymmetry of the channel. Remarkably, there exits an optimal nonequilibrium driving (depending on the active strength, the elasticity, and the packing fraction) at which the average velocity reaches the maximum. In addition, the optimized packing fraction and the optimized minimum width of the channel can facilitate the directional motion of cells. Our findings are relevant to understanding how macroscopic directional motion relates to the local force transmission mediated by cell-cell contacts in cellular monolayers.


Subject(s)
Motion , Elasticity
7.
Phys Rev E ; 108(6-1): 064409, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38243494

ABSTRACT

Traditional models for molecular (Brownian) motors predominantly depend on nonequilibrium driving, while particle interactions rigorously adhere to Newton's third law. However, numerous living and natural systems at various scales seem to defy this well-established law. In this study, we investigated the transport of mixed Brownian particles in a two-dimensional ratchet potential with nonreciprocal interactions. Our findings reveal that these nonreciprocal interactions can introduce a zero-mean nonequilibrium driving force. This force is capable of disrupting the thermodynamic equilibrium and inducing directed motion. The direction of this motion is determined by the asymmetry of the potential. Interestingly, the average velocity is a peaked function of the degree of nonreciprocity, while the effective diffusion consistently increases with the increase of nonreciprocity. There exists an optimal temperature or packing fraction at which the average velocity reaches its maximum value. We share a mechanism for particle rectification, devoid of particle-autonomous nonequilibrium drive, with potential usage in systems characterized by nonreciprocal interactions.

8.
Phys Rev E ; 106(3-1): 034208, 2022 Sep.
Article in English | MEDLINE | ID: mdl-36266857

ABSTRACT

Stochastic resetting causes kinetic phase transitions, whereas its underlying physical mechanism remains to be elucidated. We here investigate the anomalous transport of a particle moving in a chaotic system with a stochastic resetting and a rough potential and focus on how the stochastic resetting, roughness, and nonequilibrium noise affect the transports of the particle. We uncover the physical mechanism for stochastic resetting resulting in the anomalous transport in a nonlinear chaotic system: The particle is reset to a new basin of attraction which may be different from the initial basin of attraction from the view of dynamics. From the view of the energy landscape, the particle is reset to a new energy state of the energy landscape which may be different from the initial energy state. This resetting can lead to a kinetic phase transition between no transport and a finite net transport or between negative mobility and positive mobility. The roughness and noise also lead to the transition. Based on the mechanism, the transport of the particle can be tuned by these parameters. For example, the combination of the stochastic resetting, roughness, and noise can enhance the transport and tune negative mobility, the enhanced stability of the system, and the resonant-like activity. We analyze these results through variances (e.g., mean-squared velocity, etc.) and correlation functions (i.e., velocity autocorrelation function, position-velocity correlation function, etc.). Our results can be extensively applied in the biology, physics, and chemistry, even social system.

9.
Phys Rev E ; 105(1-1): 014214, 2022 Jan.
Article in English | MEDLINE | ID: mdl-35193299

ABSTRACT

Spiral waves lead to dangerous arrhythmias in the cardiac system. In 2015 Burton et al. demonstrated the reversal of the spiral wave chirality through the rotating spiral-shaped illumination on the optogenetically modified cardiac monolayers. We show that this process entails the recreation of a spiral wave. We show how this methodology can be used to control and create the desired spatial excitation pattern. We found that the control is sensitive to the area of illuminated region but independent of the phase difference of the existing spiral wave and the applied spiral-shaped light. We also discovered that our methodology can temporarily resynchronize a turbulent system. The results offer numerical evidence for the control of spatial pattern in biological excitable systems with optogenetics.

10.
Soft Matter ; 18(6): 1194-1200, 2022 Feb 09.
Article in English | MEDLINE | ID: mdl-35037681

ABSTRACT

We investigate the transport of active polymer chains in steady laminar flows in the presence of thermal noise and an external constant force. In the model, the polymer chain is worm-like and is propelled by active forces along its tangent vectors. Compared with inertial Brownian particles, active polymer chains in steady laminar flows exhibit richer movement patterns due to their specific spatial structures. The simulation results show that the velocity-force relation is strongly dependent on the system parameters such as the chain length, bending rigidity, active force and so on. The polymer chain may move in some preferential movement directions and exhibits absolute negative mobility within appropriate parameter regimes, i.e., the polymer chain can move in a direction opposite to the external constant force. In particular, we can observe giant negative mobility in a broad range of parameter regimes.

11.
Phys Rev E ; 104(4-1): 044611, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34781493

ABSTRACT

We establish an explicit data-driven criterion for identifying the solid-liquid transition of two-dimensional self-propelled colloidal particles in the far from equilibrium parameter regime, where the transition points predicted by different conventional empirical criteria for melting and freezing diverge. This is achieved by applying a hybrid machine learning approach that combines unsupervised learning with supervised learning to analyze a huge amount of the system's configurations in the nonequilibrium parameter regime on an equal footing. Furthermore, we establish a generic data-driven evaluation function, according to which the performance of different empirical criteria can be systematically evaluated and improved. In particular, by applying this evaluation function, we identify a new nonequilibrium threshold value for the long-time diffusion coefficient, based on which the predictions of the corresponding empirical criterion are greatly improved in the far from equilibrium parameter regime. These data-driven approaches provide a generic tool for investigating phase transitions in complex systems where conventional empirical ones face difficulties.

12.
Phys Rev Lett ; 127(13): 136802, 2021 Sep 24.
Article in English | MEDLINE | ID: mdl-34623865

ABSTRACT

The topology of quantum systems has become a topic of great interest since the discovery of topological insulators. However, as a hallmark of the topological insulators, the spin Chern number has not yet been experimentally detected. The challenge to directly measure this topological invariant lies in the fact that this spin Chern number is defined based on artificially constructed wave functions. Here we experimentally mimic the celebrated Bernevig-Hughes-Zhang model with cold atoms, and then measure the spin Chern number with the linear response theory. We observe that, although the Chern number for each spin component is ill defined, the spin Chern number measured by their difference is still well defined when both energy and spin gaps are nonvanished.

13.
Soft Matter ; 17(30): 7124-7132, 2021 Aug 05.
Article in English | MEDLINE | ID: mdl-34259274

ABSTRACT

Rotation of a gear powered by active particles is numerically investigated in a circular chamber. Due to the nonequilibrium properties of active particles, net gear rotation is achieved in a bath composed of self-propelling particles. Our setup can convert the random motion of active particles into the directional rotation of the ratchet gear. The direction of rotation is determined by the asymmetry of the gear and the persistence length (the ratio of the self-propulsion speed to the rotation diffusion coefficient) of active particles. Remarkably, the direction of rotation for large persistence length is opposite to the direction of rotation for small persistence length. Therefore, for a given asymmetric gear, we can observe the rotation reversal when tuning the system parameters (e.g., the self-propulsion speed, the rotation diffusion coefficient, and the packing fraction of active particles). Our findings are relevant to the experimental pursuit of rectifying random motion to directional motion in active matter.

14.
Phys Rev E ; 104(6-1): 064411, 2021 Dec.
Article in English | MEDLINE | ID: mdl-35030891

ABSTRACT

Physical demixing on large scales of embryonic cell populations is fundamental to metazoan development, but whether a rigidity disparity alone is sufficient to driving large-scale demixing in a binary mixture of cell tissues is still an open question. To answer this question, we study mixing and demixing in a binary mixture of rigidity disparity cell tissues without heterotypic interactions using the Voronoi-based cellular model. Under suitable system parameters, the solid-like cells in the mixture can aggregate into a large cluster and the large-scale demixing occurs, which addresses that a rigidity disparity alone is sufficient to drive large-scale demixing. Remarkably, there exists an optimal temperature or rigidity disparity at which the binary mixture can be separated to the maximum extent. The necessary condition for the separation of mixtures is that the two types of cells are solid-like and liquid-like, respectively. The observation of robust demixing on large scales suggests that the sorting of progenitor cells may occur very early in the development process before robust heterotypic interfacial tensions are established. Our findings are relevant to understanding the mechanisms that drive cell sorting in confluent tissues.


Subject(s)
Temperature , Animals
15.
Phys Rev E ; 102(4-1): 042114, 2020 Oct.
Article in English | MEDLINE | ID: mdl-33212680

ABSTRACT

We numerically investigate negative mobility of an inertial Brownian particle moving in a periodic double-well substrate potential in the presence of a time-periodic force and a constant bias. For the deterministic case, we find from the average velocity that the varying shape parameter and driving forces can cause negative mobility, differential negative mobility, and giant positive mobility. We analyze these findings via the bifurcation diagram and maximal Lyapunov exponent and find that certain chaos can give rise to negative mobility. For the presence of a Gaussian color noise, the results suggest that the noise intensity can enhance or result in negative and positive mobilities, whereas correlation time can enhance, weaken, or even eliminate them. On the basis of the time series, phase-space map, and power spectrum of various attractors, we unveil how these mobilities connect to strong chaotic attractors (SCAs), including both stable attractor and unstable attractors, and propose an underlying mechanism that SCAs can result in the negative mobility, whereas other attractors do not. Our findings may be potentially useful for research on anomalous transports of the particles and on designs of various devices, such as atomic chains, crystals with dislocations, and superconducting nanowires, etc.

16.
J Chem Phys ; 152(22): 224903, 2020 Jun 14.
Article in English | MEDLINE | ID: mdl-32534555

ABSTRACT

We propose a method for the chiral separation and alignment of active paramagnetic particles in a two-dimensional square box with periodic boundary conditions. In a rotational magnetic field, the dynamic behavior of magnetized particles is strongly determined by the competition between the magnetic interaction and differing chirality. By suitably tailoring the parameters, active particles with different chirality can be aggregated into different clusters and separated. However, when either the magnetic interaction or chirality difference is dominant, the particles are prone to mixing. In addition, the external rotational magnetic field plays a decisive role in aligning particles. The numerical results show that there exists an optimal strength and rotation frequency of the magnetic field, as well as a rotational diffusion coefficient, self-propulsion velocity, and packing fraction, at which the separation coefficient takes its maximal value. The proposed method can be exploited to separate naturally occurring chiral active particles.

17.
Soft Matter ; 16(20): 4710-4717, 2020 May 28.
Article in English | MEDLINE | ID: mdl-32367106

ABSTRACT

We study the cooperation and segregation dynamics of binary mixtures of active and passive particles on a sphere. According to the competition between rotational diffusion and polar alignment, we find three distinct phases: a mixed phase and two different demixed phases. When rotational diffusion dominates the dynamics, the demixing is due to the aggregation of passive particles, where active and passive particles respectively occupy two hemispheres. When polar alignment is dominated, the demixing is caused by the aggregation of active particles, where active particles occupy the equator of the sphere and passive particles occupy the two poles of the sphere. In this case, there exist a circulating band cluster and two cambered surface clusters, which is a purely curvature-driven effect with no equivalent in the planar model. When rotational diffusion and polar alignment are comparable, particles are completely mixed. Our findings are relevant to the experimental pursuit of segregation dynamics of binary mixtures on curved surfaces.

18.
J Chem Phys ; 152(18): 184903, 2020 May 14.
Article in English | MEDLINE | ID: mdl-32414246

ABSTRACT

Transport and separation of binary mixtures of active and passive particles are investigated in the presence of temperature differences. It is found that temperature differences can strongly affect the rectification and separation of the mixtures. For active particles, there exists an optimal temperature difference at which the rectified efficiency is maximal. Passive particles are not propelled and move by collisions with active particles, so the response to temperature differences is more complicated. By changing the system parameters, active particles can change their directions, while passive particles always move in the same direction. The simulation results show that the separation of mixtures is sensitive to the system parameters, such as the angular velocity, the temperature difference, and the polar alignment. The mixed particles can be completely separated under certain conditions.

19.
Phys Rev Lett ; 124(7): 075001, 2020 Feb 21.
Article in English | MEDLINE | ID: mdl-32142350

ABSTRACT

The naturally persistent flow of hundreds of dust particles is experimentally achieved in a dusty plasma system with the asymmetric sawteeth of gears on the electrode. It is also demonstrated that the direction of the dust particle flow can be controlled by changing the plasma conditions of the gas pressure or the plasma power. Numerical simulations of dust particles with the ion drag inside the asymmetric sawteeth verify the experimental observations of the flow rectification of dust particles. Both experiments and simulations suggest that the asymmetric potential and the collective effect are the two keys in this dusty plasma ratchet. With the nonequilibrium ion drag, the dust flow along the asymmetric orientation of this electric potential of the ratchet can be reversed by changing the balance height of dust particles using different plasma conditions.

20.
J Chem Phys ; 152(3): 034901, 2020 Jan 21.
Article in English | MEDLINE | ID: mdl-31968953

ABSTRACT

Efficient separation of particles has ever-growing importance in both fundamental research and nanotechnological applications. However, such particles usually suffer from some fluctuations from external surroundings and outside intervention from unknown directions. Here, we numerically investigate the transport of Brownian particles in a straight channel with regular arrays of equilateral triangle obstacles. The particles can be rectified by the triangle obstacles under the action of an oscillating (square wave) force. At the given amplitude and frequency of the oscillating force, the transport is sensitively dependent on the force direction and particle size. In the cases of longitudinal and transversal oscillating force, the particles with different sizes exhibit different transport behaviors. Interestingly, under a constant force in the longitudinal direction, the phenomenon of particle separation is observed, where the particles with different radii will move in different directions. Furthermore, we also study the transport of Brownian particles driven by a tilt oscillating force. By choosing proper force directions, we can observe the gating phenomenon and transport reversal. Under different driving conditions, we can separate particles of different sizes and make them move in opposite directions.

SELECTION OF CITATIONS
SEARCH DETAIL