Peculiar behavior of the ester carbonyl vibrational modes in anisotropic aliphatic and semi-aromatic polyesters.

The current work reports on a systematic study related to the vibrational modes of the ester carbonyl group in drawn polyesters. We have observed and try to explain how the presence of aromatic units in the molecular structure substantially affects the respective elements of the Raman tensor in contrast to the dipole moment derivative vector which is only marginally influenced. The work is based on the collection of polarized Raman spectra and FTIR dichroism measurements on the one hand and on DFT calculations on the other. The experimental data were obtained from uniaxially stretched aliphatic and semi-aromatic polyesters. The calculations were applied on relevant oriented oligomers and allowed the extraction: (i) of reliable Raman/FTIR vibrational spectra and (ii) the components of the dipole moment derivative and Raman tensor of the vibrational modes and in particular the ones involving the ester carbonyl group. Experimental data indicate that the intensity of the ester carbonyl band is considerably enhanced in the Raman spectra of semi-aromatic polyesters, which results from a considerable enhancement of the related coupling coefficient. Furthermore, the angles of the principle Raman tensor axis are rotated so that the element of the tensor with the greatest value is oriented towards the direction designated by the segment. The latter explains the peculiar experimentally indicated anisotropy, through the ester carbonyl stretching, for the case of semi-aromatic polyesters, which is totally different with that observed in the aliphatic ones.

The glassy and supercooled state of elemental sulfur: vibrational modes, structure metastability, and polymer content.

We report a detailed investigation of vibrational modes, structure, and dynamics of elemental sulfur in the glassy and the supercooled state, using Raman scattering and ab initio calculations. Polarized Raman spectra are recorded--for sulfur quenched from 473 K--over a broad temperature range from 93 K to 273 K where the supercooled liquid crystallized. The temperature induced shifts of the majority of the vibrational modes are determined and compared with the corresponding ones of crystalline sulfur. Analysis of the reduced isotropic spectra showed that the structure of the quenched product is composed of eight member rings (S8) and polymeric chains (Sµ) with a relative fraction comparable to that of the parent liquid at 473 K. Low temperature spectra, where spectral line broadening due to thermal effects is limited, revealed that two different polymeric species are present in the glass with distinct vibrational frequencies. Their interpretation was assisted by ab initio calculations used to simulate the vibrational frequencies of polymeric chains S(8k) (k = 1, ..., 7). Theoretical results exhibit an increasing breathing mode frequency for sulfur chains up to k = 2, although it remains constant beyond the above value. The polymeric content is metastable; heating the glass above its glass transition temperature, T(g), destabilizes the chains and drives them back to the more thermodynamically stable rings. This bond interchange mechanism provides the structural origin of a secondary relaxation process in supercooled sulfur reported long ago, which has been also considered as a complication in the correct fragility estimation of this material. Finally, the Boson peak of the glass was found to exhibit strong temperature dependence even at temperatures below T(g).

Nonergodicity factor, fragility, and elastic properties of polymeric glassy sulfur.

We present a detailed investigation of the vibrational dynamics of glassy sulfur (g-S). The large frequency range spanned in this study has allowed us to carefully scrutinize the elastic properties of g-S and to analyze their relation to various features of both the glassy and the liquid state. In particular, the acoustic properties of g-S present a quasi-harmonic behavior in the THz frequency range, while at lower frequency, in the GHz range, they are affected by a strong anharmonic contribution. Moreover, the high frequency (THz) dynamics of g-S does not present signatures of the elastic anomalies recently observed in a number of glasses. Despite this apparent contradiction, we show that this finding is not in disagreement with the previous ones. Finally, by considering the correct long wavelength limit of the density fluctuations in the glassy state, we estimate the continuum limit of the nonergodicity factor and we investigate recently proposed relations between the fast dynamics of glasses and the slow dynamics of the corresponding viscous melts.

High pressure transition in amorphous As(2)S(3) studied by EXAFS.

We report an in situ high pressure investigation of the structural change in vitreous As(2)S(3) up to 60 GPa using the diamond anvil cell and energy dispersive x-ray absorption spectroscopy. The main finding of the present study is a gradual elongation of the average As-S bond length, which takes place in the pressure range of 15-50 GPa. This change is interpreted as a signature of the coordination number increase around As atoms. The negative shift of the As K absorption edge position confirms the progressive metallization of the glass at high pressure. The observed changes are reversible after pressure release.

Infrared and Raman vibrational spectroscopies reveal the palette of frescos found in the medieval monastery of Karaach Teke.

Vibrational spectroscopy is applied on samples obtained from the excavation area of the medieval Monastery (10th century) of Karaach-Teke in Bulgaria. The results of the corresponding study, reveal the type of materials used for the creation of the wall-paintings and give evidence of Byzantine influence, a fact that further supports the well known impact of Byzantium on the technology and thematic-aesthetic features of iconography in Bulgaria during this era. In addition, the complementarity of FTIR and micro-Raman spectroscopies in the identification of pigments is indicated.

Origin of the lambda transition in liquid sulfur.

Developing a novel experimental technique, we applied photon correlation spectroscopy using infrared radiation in liquid sulfur around T(lambda), i.e., in the temperature range where an abrupt increase in viscosity by 4 orders of magnitude is observed upon heating within few degrees. This allowed us - overcoming photoinduced and absorption effects at visible wavelengths - to reveal a chain relaxation process with characteristic time in the millisecond range. These results do rehabilitate the validity of the Maxwell relation in sulfur from an apparent failure, allowing rationalizing of the mechanical and thermodynamic behavior of this system within a viscoelastic scenario.

On the extent of polymerization of liquid sulfur at very high temperatures.

The extent of polymerization of liquid sulfur up to 731 K has been obtained using Raman scattering. The data reveal the absence of a maximum in the polymerization curve. The obtained results are discussed in the spirit of computer simulations that suggest the existence of a maximum which depends on the bond breaking energy.

Raman scattering study on structural and dynamical features of noncrystalline selenium.

We report on a detailed, temperature-dependent, off-resonant Raman scattering study of glassy and supercooled selenium. Raman spectra in the frequency regime of the first-order scattering (5-450 cm(-1)) have been recorded over a wide temperature range, i.e., 143-353 K. To facilitate the analysis, the spectra have intuitively been divided in three spectral regions. The analysis of the high frequency region (bond-stretching vibrational modes) yielded information on the rings-chains equilibrium. In particular, the polymer content was found to amount to more than 85% around the glass transition temperature, exhibiting a weak temperature dependence, which extrapolates nicely to the high-temperature dissolution data. The intermediate frequency range (representative of the medium-range structural order) was treated together with the low frequency regime (where low-energy excitations, i.e., the quasielastic line and the Boson peak are the dominant contributions) owing to their strong overlap. The study of the bond-bending regime revealed information which made it possible to clarify the role of ringlike and chainlike fragments incorporated in polymeric molecules. The temperature evolution of the Boson peak and the frequency dependence of the Raman coupling coefficient Comega were also determined. An attempt to decompose the partial contribution of the pure Boson peak to Comega revealed valuable information concerning the limiting (omega-->0) behavior of the coupling coefficient.

Pathogenetic sequence for aneurysm revealed in mice underexpressing fibrillin-1.

Dissecting aortic aneurysm is the hallmark of Marfan syndrome (MFS) and the result of mutations in fibrillin-1, the major constituent of elastin-associated extracellular microfibrils. It is yet to be established whether dysfunction of fibrillin-1 perturbs the ability of the elastic vessel wall to sustain hemodynamic stress by disrupting microfibrillar assembly, by impairing the homeostasis of established elastic fibers, or by a combination of both mechanisms. The pathogenic sequence responsible for the mechanical collapse of the elastic lamellae in the aortic wall is also unknown. Targeted mutation of the mouse fibrillin-1 gene has recently suggested that deficiency of fibrillin-1 reduces tissue homeostasis rather than elastic fiber formation. Here we describe another gene-targeting mutation, mgR, which shows that underexpression of fibrillin-1 similarly leads to MFS-like manifestations. Histopathological analysis of mgR/mgR specimens implicates medial calcification, the inflammatory-fibroproliferative response, and inflammation-mediated elastolysis in the natural history of dissecting aneurysm. More generally, the phenotypic severity associated with various combinations of normal and mutant fibrillin-1 alleles suggests a threshold phenomenon for the functional collapse of the vessel wall that is based on the level and the integrity of microfibrils.

Aiolos regulates B cell activation and maturation to effector state.

Aiolos encodes a zinc finger DNA-binding protein that is highly expressed in mature B cells and is homologous to Ikaros. In the periphery of mice homozygous for an Aiolos-null mutation, B cells exhibit an activated cell surface phenotype and undergo augmented antigen receptor (BCR)-mediated in vitro proliferative responses, even at limiting amounts of stimulant. In vivo, T cell-dependent B cell responses, including the formation of germinal centers and elevated serum IgG and IgE, are detected in Aiolos-deficient mice in the absence of immunization. Auto-antibodies and development of B cell lymphomas are frequently seen among aging Aiolos mutants. In sharp contrast to conventional B cells, B cells of the peritoneum, of the marginal zone, and the recirculating bone marrow population are greatly reduced.

Effect of targeted mutation in collagen V alpha 2 gene on development of cutaneous hyperplasia in tight skin mice.

Collagen V plays a major regulatory role in the formation of heterotypic fibers of the dermis and cartilaginous tissues as well as in the assembly of extracellular matrix. The pN/pN mouse, which is defective in collagen V alpha 2 gene, exhibits skeletal abnormalities, skin fragility, and alterations in the collagen fiber organization, whereas the TSK/+ mouse, which is defective in fibrillin-1, the major component of microfibrils present in the extracellular matrix, develops cutaneous hyperplasia and autoimmunity. We have studied the role of collagen V in the formation of heterotypic collagen fibers in F1 mice, which are obtained by breeding pN/pN with TSK/+ mice. Our results show that F1 progeny neither develop cutaneous hyperplasia nor produce anti-topoisomerase I autoantibodies, unlike TSK/+ mice. The diameter of the collagen fibrils in the skin is also comparable to that found in control mice. Thus, the phenotypic changes observed in the TSK mouse could be reversed by genetic complementation with a collagen V-defective mouse.

Targetting of the gene encoding fibrillin-1 recapitulates the vascular aspect of Marfan syndrome.

Aortic aneurysm and dissection account for about 2% of all deaths in industrialized countries; they are also components of several genetic diseases, including Marfan syndrome (MFS). The vascular phenotype of MFS results from mutations in fibrillin-1 (FBN1), the major constituent of extracellular microfibrils. Microfibrils, either associated with or devoid of elastin, give rise to a variety of extracellular networks in elastic and non-elastic tissues. It is believed that microfibrils regulate elastic fibre formation by guiding tropo-elastin deposition during embryogenesis and early post-natal life. Hence, vascular disease in MFS is thought to result when FBN1 mutations preclude elastic fibre maturation by disrupting microfibrillar assembly. Here we report a gene-targetting experiment in mice that indicates that fibrillin-1 microfibrils are predominantly engaged in tissue homeostasis rather than elastic matrix assembly. This finding, in turn, suggests that aortic dilation is due primarily to the failure by the microfibrillar array of the adventitia to sustain physiological haemodynamic stress, and that disruption of the elastic network of the media is a secondary event.

Aiolos, a lymphoid restricted transcription factor that interacts with Ikaros to regulate lymphocyte differentiation.

Development of the lymphoid system is dependent on the activity of zinc finger transcription factors encoded by the Ikaros gene. Differences between the phenotypes resulting from a dominant-negative and a null mutation in this gene suggest that Ikaros proteins act in concert with another factor with which they form heterodimers. Here we report the cloning of Aiolos, a gene which encodes an Ikaros homologue that heterodimerizes with Ikaros proteins. In contrast to Ikaros--which is expressed from the pluripotent stem cell to the mature lymphocyte--Aiolos is first detected in more committed progenitors with a lymphoid potential and is strongly up-regulated as these differentiate into pre-T and pre-B cell precursors. The expression patterns of Aiolos and Ikaros, the relative transcriptional activity of their homo- and heteromeric complexes, and the dominant interfering effect of mutant Ikaros isoforms on Aiolos activity all strongly suggest that Aiolos acts in concert with Ikaros during lymphocyte development. We therefore propose that increasing levels of Ikaros and Aiolos homo- and heteromeric complexes in differentiating lymphocytes are essential for normal progression to a mature and immunocompetent state.

Coding sequence and alternative splicing of the mouse alpha 1(XI) collagen gene (Col11a1).

Several overlapping cDNA clones corresponding to the entire coding sequence of the mouse alpha 1(XI) collagen gene (Col11 a1) were isolated. The conceptual amino acid translation indicated a high degree of sequence identity (93%) with the human alpha 1(XI) chain. The cloning experiments also revealed alternative splicing of the sequence coding for 85 residues located within the acidic region of the amino-globular domain of alpha 1(XI). Analysis of RNA samples from different embryonic tissues suggested that alternative splicing might be confined to tissue destined to become bone.

A fibrillar collagen gene, Col11a1, is essential for skeletal morphogenesis.

Mice that are homozygous for the autosomal recessive chondrodysplasia (cho) mutation die at birth with abnormalities in cartilage of limbs, ribs, mandible, and trachea. Limb bones of newborn cho/cho mice are wider at the metaphyses than normal bones and only about half the normal length. By linkage analysis, the cho gene and the gene encoding the alpha 1 (XI) chain of cartilage collagen XI were mapped to the same region of chromosome 3. Deletion of a cytidine residue about 570 nt downstream of the translation initiation codon in cho alpha 1 (XI) mRNA causes a reading frame shift and introduces a premature stop codon. The data demonstrate that collagen XI is essential for normal formation of cartilage collagen fibrils and the cohesive properties of cartilage. The results also suggest that the normal differentiation and spatial organization of growth plate chondrocytes is critially dependent on the presence of type XI collagen in cartilage extracellular matrix.

Targeted mutation in the col5a2 gene reveals a regulatory role for type V collagen during matrix assembly.

The tissue-specific organization of collagen molecules into tridimensional macroaggregates determines the physiomechanical properties of most connective tissues, but the factors and mechanisms controlling this process are unknown. It has been postulated that quantitatively minor types V and XI collagen regulate the growth of type I and II collagen fibrils, respectively. To test this hypothesis, we created mice that produce a structurally abnormal alpha 2(V) collagen chain. Homozygous mutant mice survive poorly, possibly because of complications from spinal deformities, and exhibit skin and eye abnormalities caused by disorganized type I collagen fibrils. Our results demonstrate that type V collagen is a key determinant in the assembly of tissue-specific matrices, and provide an animal model for human connective tissue disorders.

Pro-alpha 2(V) collagen gene; pairwise analysis of the amino-propeptide coding domain, and cross-species comparison of the promoter sequence.

Type V collagen is a minor represented and poorly characterized fibrillar collagen type. Previous cDNA cloning experiments showed that the amino-propeptide of the pro-alpha 2(V) chain shares structural features in common with pro-alpha 1(I), pro alpha 1(II) and pro-alpha 1(III) collagens. In the present paper, this analysis was extended to the gene level. Accordingly the exon/intron arrangement of the amino-propeptide coding domain was compared among pro-alpha 1(I) (COL1A1), pro alpha 1(II) (COL2A1), pro-alpha 1(III) (CO13A1) and pro-alpha 2(V) (COL5A2) collagen genes. This revealed that COL3A1 is the most closely related gene to COL5A2. Based on the assumption that critical regulatory elements might be phylogenetically conserved, we also compared the promoter sequences of the mouse and human COL5A2 genes. This revealed the highest level of sequence homology (97%) in a 52-bp segment which was previously shown to be essential in conferring cell type specificity to the human promoter.

Localization of pro-alpha 2(V) collagen transcripts in the tissues of the developing mouse embryo.

Correct assembly of fibrillar collagen networks plays a critical role in animal morphogenesis. Very little is known about the contribution of the so-called minor fibrillar collagens (types V and XI) to fibrillogenesis. Here we examined the developmental expression of the mouse pro-alpha 2(V) collagen gene (col5a2) after the cloning and sequencing of cDNAs that cover the entire length of the message. Transcripts of col5a2, detectable as early as 9 days of gestation, localize with distinct patterns in the tissues of day 12.5 and day 16.5 fetuses. The earlier developmental stage is characterized by low and diffuse col5a2 expression in the peritoneal membranes and intestinal and craniofacial mesenchymes. The later stage exhibits higher and more restricted col5a2 mRNA accumulation in primary ossified regions, perichondrium, joints, tendon, atrioventricular valve of the heart, and selected portions of the head. A parallel analysis using a cartilage-specific pro-alpha 1(II) collagen (col2a1) probe confirmed that these two collagen genes are transcribed in a mutually exclusive manner during mouse embryogenesis. On the other hand, the developmental pattern of col5a2 expression closely resembles that of the type I collagen, thus further substantiating the notion that these macromolecules cooperate in the formation of fibrillar networks in non-cartilaginous matrices.

The primary structure of bovine monoamine oxidase type A. Comparison with peptide sequences of bovine monoamine oxidase type B and other flavoenzymes.

We have isolated cDNA clones believed to encompass the full-length coding sequences for a subunit of bovine monoamine oxidase type A (MAO-A). The clones code for an apoprotein of 527 amino acid residues corresponding to a molecular mass of 59,806 Da. The inferred protein sequences show an overall similarity of 68% with partial amino acid sequences of bovine type B MAO (about 41% of the total sequence), as well as a greater similarity (greater than 90%) with some regions including that for the published sequence of the flavin-binding region. Sequence comparisons indicate that these two forms of MAO are encoded by distinct genes. Comparison of this sequence with other flavoenzymes showed similarity with regions associated with non-covalent flavin-binding sites. Analysis of mRNAs coding for MAO enzymes showed a heterogeneity of transcripts consistent with several different forms of monoamine oxidase.