ABSTRACT
SARS-CoV-2 has a zoonotic origin and was transmitted to humans via an undetermined intermediate host, leading to infections in humans and other mammals. To enter host cells, the viral spike protein (S-protein) binds to its receptor, ACE2, and is then processed by TMPRSS2. Whilst receptor binding contributes to the viral host range, S-protein:ACE2 complexes from other animals have not been investigated widely. To predict infection risks, we modelled S-protein:ACE2 complexes from 215 vertebrate species, calculated changes in the energy of the complex caused by mutations in each species, relative to human ACE2, and correlated these changes with COVID-19 infection data. We also analysed structural interactions to better understand the key residues contributing to affinity. We predict that mutations are more detrimental in ACE2 than TMPRSS2. Finally, we demonstrate phylogenetically that human SARS-CoV-2 strains have been isolated in animals. Our results suggest that SARS-CoV-2 can infect a broad range of mammals, but few fish, birds or reptiles. Susceptible animals could serve as reservoirs of the virus, necessitating careful ongoing animal management and surveillance.
Subject(s)
Peptidyl-Dipeptidase A/chemistry , Phylogeny , Spike Glycoprotein, Coronavirus/chemistry , Angiotensin-Converting Enzyme 2 , Animals , Betacoronavirus/classification , Betacoronavirus/genetics , Humans , Mammals , Molecular Docking Simulation , Mutation , Peptidyl-Dipeptidase A/classification , Peptidyl-Dipeptidase A/genetics , Peptidyl-Dipeptidase A/metabolism , Protein Binding , SARS-CoV-2 , Spike Glycoprotein, Coronavirus/metabolismABSTRACT
We surveyed 15 different brands of eye shadow on display for customer use in different retail stores for microbial contamination. This was the first reported microbial surveillance of in-use eye shadow display testers in retail establishments. Cultures were obtained at each retail store. Sterile dacron swabs were rolled and rubbed over the entire used surface of each shadow, and each inoculum was streaked onto the surfaces of blood agar plates. Of the 1,345 individual samples obtained, 67% were contaminated with one or more species of microorganisms representing the genera Staphylococcus, Micrococcus, Corynebacterium, Acinetobacter, Bacillus, and Moraxella. We also purchased two different brands of water-miscible eye shadows in replicate unit containers. Each brand was challenged separately with a few hundred to several thousand colony-forming units of Staphylococcus aureus, Pseudomonas aeruginosa, or Acinetobacter calcoaceticus. Both brands permitted growth of P. aeruginosa but not growth of S. aureus. A. calcoaceticus was inhibited after inoculation into one brand. With the other brand, the inoculum of Acinetobacter multiplied in one of the two different lots tested. This experimental challenge procedure can serve as a useful model system for studying the behavior of microbes in eye shadows and similar matrices.