Numerical analysis of trajectories in a Cassinian ion trap of second order with trap door ion inlet.

Ion traps like the Orbitrap are well known mass analyzers with very high resolving power. This resolving power is achieved with help of ions orbiting around an inner electrode for long time, in general up to a few seconds, since the mass signal is obtained by calculating the Fourier Transform of the induced signal caused by the ion motion. A similar principle is applied in the Cassinian Ion Trap of second order, where the ions move in a periodic pattern in-between two inner electrodes. The Cassinian ion trap has the potential to offer mass resolving power comparable to the Orbitrap with advantages regarding the experimental implementation. In this paper we have investigated the details of the ion motion analyzing experimental data and the results of different numerical methods, with focus on increasing the resolving power by increasing the oscillation frequency for ions in a high field ion trap. In this context the influence of the trap door, a tunnel through which the ions are injected into the trap, on the ion velocity becomes especially important.

Photoionization and photofragmentation in mass spectrometry with visible and UV lasers.

Ever since the introduction of laser technology to the field of mass spectrometry, several disciplines evolved providing solutions to challenging scientific and analytical tasks in research and industry. Among these are techniques involving multiphoton ionization such as Resonance-Enhanced Multiphoton Ionization (REMPI, R2PI) and Mass-Analyzed Threshold Ionization (MATI) spectroscopy, a variant of Zero Kinetic Energy (ZEKE) spectroscopy, that possess the ability to selectively ionize certain preselected compounds out of complex mixtures, for example, environmental matrices, with a high level of efficiency. Another key feature of multiphoton ionization techniques is the ability to control the degree of fragmentation, whereas soft ionization is most highly appreciated in most applications. In cases where rich fragmentation patterns are desired for diagnostic purposes, Photodissociation mass spectrometry (PD-MS) is applied successfully. PD-MS allows for the cleavage of selected chemical bonds. With the introduction of chromophoric labels in PD-MS, it became possible to target certain molecules or groups within a molecule. In this review article, an overview of the basic principles and experimental requirements of REMPI and MATI spectroscopy and PD mass spectrometry are given. By means of selected examples, the latest developments and application possibilities in this field over the past decade with special focus on the German research landscape are pointed out. © 2018 Wiley Periodicals, Inc. Mass Spec Rev 38: 202-217, 2019.

Measuring the effects of Coulomb repulsion via signal decay in an atmospheric pressure laser ionization ion mobility spectrometer.

Using lasers in ion mobility spectrometry offers a lot of advantages compared to standard ionization sources. Especially, the ion yield can be drastically increased. It can, however, reach levels where the Coulomb repulsion leads to unwanted side effects. Here, we investigate how the Coulomb repulsion can be detected apart from the typical signal broadening by measuring effects created already in the reaction region and comparing them with corresponding finite element method simulations.

Evaluation of calculated negative mode ion mobilities of small molecules in air.

Ion mobility spectrometry is a well-known technique employed for the detection and analysis of gaseous substances. In pharmaceutical applications, it is furthermore used for structural analysis of compounds, especially in combination with mass spectrometry. In this field, the comparison of calculated collision cross sections and ion mobilities of theoretic model compounds with experimental values measured with ion mobility spectrometers helps to determine the compound's structure. For positive mode ion mobility spectrometry, the calculated mobilities using the Trajectory Method show in general a deviation of 10% or less from experimental values. In this article, it was analyzed how well the calculated values reproduce the experimental values obtained with negative mode ion mobility spectrometry including symmetric and asymmetric analyte clusters. Furthermore, the influence of four different partial charge models on the results was investigated.

Comparison of Experimental and Calculated Ion Mobilities of Small Molecules in Air.

Ion mobility spectrometry is a well-known technique for analyzing gases. Examples are military applications, but also safety related applications, for example, for protection of employees in industries working with hazardous gases. In the last 15 years, this technique has been further developed as a tool for structural analysis, for example, in pharmaceutical applications. In particular, the collision cross section, which is related to the mobility, is of interest here. With help of theoretic principles, it is possible to develop molecular models that can be verified by the comparison of their calculated cross sections with experimental data. In this paper, it is analyzed how well the ion trajectory method is suitable to reproduce the measured ion mobility of small organic molecules such as the water clusters forming the positively charged reactant ions, simple aromatic substances, and n-alkanes.

A comparative study of APLI and APCI in IMS at atmospheric pressure to reveal and explain peak broadening effects by the use of APLI.

The details of the ionization mechanism in atmospheric pressure are still not completely known. In order to obtain further insight into the occurring processes in atmospheric pressure laser ionization (APLI) a comparative study of atmospheric pressure chemical ionization (APCI) and APLI is presented in this paper. This study is carried out using similar experimental condition at atmospheric pressure employing a commercial ion mobility spectrometer (IMS). Two different peak broadening mechanisms can then be assigned, one related to a range of different species generated and detected, and furthermore for the first time a power broadening effect on the signals can be identified.

Investigation of ion-ion-recombination at atmospheric pressure with a pulsed electron gun.

For future development of simple miniaturized sensors based on pulsed atmospheric pressure ionization as known from ion mobility spectrometry, we investigated the reaction kinetics of ion-ion-recombination to establish selective ion suppression as an easy to apply separation technique for otherwise non-selective ion detectors. Therefore, the recombination rates of different positive ion species, such as protonated water clusters H(+)(H(2)O)(n) (positive reactant ions), acetone, ammonia and dimethyl-methylphosphonate ions, all recombining with negative oxygen clusters O(2)(-)(H(2)O)(n) (negative reactant ions) in a field-free reaction region, are measured and compared. For all experiments, we use a drift tube ion mobility spectrometer equipped with a non-radioactive electron gun for pulsed atmospheric pressure ionization of the analytes. Both, ionization and recombination times are controlled by the duty cycle and repetition rate of the electron emission from the electron gun. Thus, it is possible to investigate the ion loss caused by ion-ion-recombination depending on the recombination time defined as the time delay between the end of the electron emission and the ion injection into the drift tube. Furthermore, the effect of the initial total ion density in the reaction region on the ion-ion-recombination rate is investigated by varying the density of the emitted electrons.

Quantitative information in decay curves obtained with a pulsed ion mobility spectrometer.

Ion mobility spectrometry (IMS) is well known for its very high sensitivity, and thus IMS spectra are commonly used in the identification of trace gases. Extracting quantitative information from IMS spectra is, in contrast, difficult, especially regarding the reproducibility due to the nature of the processes involved in the measurement of the spectra. Here we present data extracted from signal decay curves obtained with a pulsed IMS, which can support the determination of substance concentrations in the lower ppb range with good stability.

Application of a nonradioactive pulsed electron source for ion mobility spectrometry.

Ion mobility spectrometry (IMS) is a well-known method for detecting hazardous compounds in air. Typical applications are the detection of chemical warfare agents, highly toxic industrial compounds, explosives, and drugs of abuse. Detection limits in the low part per billion range, fast response times, and simple instrumentation make this technique more and more popular. Common ion mobility spectrometers work by employing a radioactive source to provide electrons with high energy to ionize analytes in a series of chemical reactions. General security as well as regulatory concerns related to radioactivity result in the need for a different ionization source which on the other hand produces ions in a similar manner as a radioactive source since the ion chemistry is well-known. Here we show the application of a novel nonradioactive source that produces spectra similar to those obtained with radioactive tritium sources. Using this source in a pulsed mode offers the additional advantage of selecting certain analytes by their recombination time and thus significantly increasing the selectivity. The successful isolation of a target signal in the presence of contaminants using a pulsed electron beam or more precisely the difference in recombination times will be demonstrated for the case of dimethyl-methylphosphonate (DMMP) showing the potential of this source to reduce the possibility for false-positive detection of corresponding chemical warfare agents (CWA) by IMS.

Microglia cells protect neurons by direct engulfment of invading neutrophil granulocytes: a new mechanism of CNS immune privilege.

Microglial cells maintain the immunological integrity of the healthy brain and can exert protection from traumatic injury. During ischemic tissue damage such as stroke, peripheral immune cells acutely infiltrate the brain and may exacerbate neurodegeneration. Whether and how microglia can protect from this insult is unknown. Polymorphonuclear neutrophils (PMNs) are a prominent immunologic infiltrate of ischemic lesions in vivo. Here, we show in organotypic brain slices that externally applied invading PMNs massively enhance ischemic neurotoxicity. This, however, is counteracted by additional application of microglia. Time-lapse imaging shows that microglia exert protection by rapid engulfment of apoptotic, but, strikingly, also viable, motile PMNs in cell culture and within brain slices. PMN engulfment is mediated by integrin- and lectin-based recognition. Interference with this process using RGDS peptides and N-acetyl-glucosamine blocks engulfment of PMNs and completely abrogates the neuroprotective function of microglia. Thus, engulfment of invading PMNs by microglia may represent an entirely new mechanism of CNS immune privilege.

Analyzing the physicodynamics of immune cells in a three-dimensional collagen matrix.

The movement of immune cells is an indispensable prerequisite for their function. All essential steps of cellular immunity rely on the ability of cells to migrate and to interact with each other. Although observation of these phenomena in vivo would be the most physiological approach, intravital imaging is technically very demanding and not optimally suited for routine or high-throughput analysis. Any good in vitro experimental system should reflect the inherent three-dimensionality of cell migration and interaction in living tissues. Data generated over the last decade show that important cellular parameters like cell velocity, cell shape, and the physicodynamics of cell-cell interactions closely resemble values observed in vivo when measured in a three-dimensional (3D) collagen matrix assay, featuring a hydrated network of fibers consisting of type I collagen, the major component of the extracellular matrix. In this chapter, we describe in detail the experimental use of the 3D collagen matrix system. We delineate the preparation of immune cells exemplified by bone marrow-derived dendritic cells and antigen specific T-helper cells of the mouse, the build-up and use of the 3D collagen matrix chamber, the procedures of real time fluorescence microscopic analysis of cell migration and cell-cell interaction, as well as data analysis supported by a self-developed software for computer-assisted cell tracking.

Environmental dimensionality controls the interaction of phagocytes with the pathogenic fungi Aspergillus fumigatus and Candida albicans.

The fungal pathogens Aspergillus fumigatus and Candida albicans are major health threats for immune-compromised patients. Normally, macrophages and neutrophil granulocytes phagocytose inhaled Aspergillus conidia in the two-dimensional (2-D) environment of the alveolar lumen or Candida growing in tissue microabscesses, which are composed of a three-dimensional (3-D) extracellular matrix. However, neither the cellular dynamics, the per-cell efficiency, the outcome of this interaction, nor the environmental impact on this process are known. Live imaging shows that the interaction of phagocytes with Aspergillus or Candida in 2-D liquid cultures or 3-D collagen environments is a dynamic process that includes phagocytosis, dragging, or the mere touching of fungal elements. Neutrophils and alveolar macrophages efficiently phagocytosed or dragged Aspergillus conidia in 2-D, while in 3-D their function was severely impaired. The reverse was found for phagocytosis of Candida. The phagocytosis rate was very low in 2-D, while in 3-D most neutrophils internalized multiple yeasts. In competitive assays, neutrophils primarily incorporated Aspergillus conidia in 2-D and Candida yeasts in 3-D despite frequent touching of the other pathogen. Thus, phagocytes show activity best in the environment where a pathogen is naturally encountered. This could explain why "delocalized" Aspergillus infections such as hematogeneous spread are almost uncontrollable diseases, even in immunocompetent individuals.