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1.
Cancer Med ; 13(18): e70252, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39350574

ABSTRACT

BACKGROUND AND AIMS: Cardiac glycosides (CGs), traditionally used for heart failure, have shown potential as anti-cancer agents. This study aims to explore their multifaceted mechanisms in cancer cell biology using proteome integral solubility alteration (PISA), focusing on the interaction with key proteins implicated in cellular metabolism and mitochondrial function. METHODS: We conducted lysate-based and intact-cell PISA assays on cancer cells treated with CGs (Digoxin, Digitoxin, Ouabain) to analyze protein solubility changes. This was followed by mass spectrometric analysis and bioinformatics to identify differentially soluble proteins (DSPs). Molecular docking simulations were performed to predict protein-CG interactions. Public data including gene expression changes upon CG treatment were re-analyzed for validation. RESULTS: The PISA assays revealed CGs' broad-spectrum interactions, particularly affecting proteins like PKM2, ANXA2, SLC16A1, GOT2 and GLUD1. Molecular docking confirmed stable interactions between CGs and these DSPs. Re-analysis of public data supported the impact of CGs on cancer metabolism and cell signaling pathways. CONCLUSION: Our findings suggest that CGs could be repurposed for cancer therapy by modulating cellular processes. The PISA data provide insights into the polypharmacological effects of CGs, warranting further exploration of their mechanisms and clinical potential.


Subject(s)
Cardiac Glycosides , Molecular Docking Simulation , Proteome , Solubility , Humans , Cardiac Glycosides/pharmacology , Cardiac Glycosides/chemistry , Antineoplastic Agents/pharmacology , Cell Line, Tumor , Neoplasms/drug therapy , Neoplasms/metabolism , Computational Biology/methods
2.
Chemphyschem ; : e202400591, 2024 Oct 01.
Article in English | MEDLINE | ID: mdl-39351923

ABSTRACT

This study investigates the role of intramolecular hydrogen bonds in the formation of cocrystals involving flavonoid molecules, focusing on three active pharmaceutical ingredients (APIs): chrysin (CHR), isoliquiritigenin (ISO), and kaempferol (KAE). These APIs form cocrystals with different cocrystal formers (CCFs) through intramolecular hydrogen bonding. We found that disruption of these intramolecular hydrogen bonds leads to decreased stability compared to molecules with intact bonds. The extrema of molecular electrostatic potential surfaces (MEPS) show that flavonoid molecules with disrupted intramolecular hydrogen bonds have stronger hydrogen bond donors and acceptors than those with intact bonds. Using the artificial bee colony algorithm, dimeric structures of these flavonoid molecules were explored, representing early-stage structures in cocrystal formation, including API-API, API-CCF, and CCF-CCF dimers. It was observed that the number and strength of dimeric interactions significantly increased, and the types of interactions changed when intramolecular hydrogen bonds were disrupted. These findings suggest that disrupting intramolecular hydrogen bonds generally hinders the formation of cocrystals. This theoretical study provides deeper insight into the role of intramolecular hydrogen bonds in the cocrystal formation of flavonoids.

3.
Fitoterapia ; : 106247, 2024 Oct 10.
Article in English | MEDLINE | ID: mdl-39395698

ABSTRACT

Six undescribed compounds (1-6) and twenty-three known analogues (7-29) were isolated from the fresh roots of Rehmannia glutinosa. The structures of the compounds (1-29) were established through the application of spectroscopic analysis. Compounds 3, 4, 6, 8, 13, 18, 21, 22, 25, and 28 exhibited excellent anti-pulmonary fibrosis activity. The potential mechanistic pathway of 3 was also investigated, whose results indicate that compound 3 ameliorate TGF-ß1 induced BEAS-2B cell injury via PI3K/AKT/NF-κB signaling pathway.

4.
J Youth Adolesc ; 2024 Sep 16.
Article in English | MEDLINE | ID: mdl-39285117

ABSTRACT

Depressive symptoms and sleep problems are extremely prevalent in adolescence, and future time perspective has been found to be strongly associated with them. However, little is known about the longitudinal relationship and the temporal dynamics of future time perspective, sleep problems, and depressive symptoms. Moreover, it is unclear whether sleep problems mediate the associations between future time perspective and depressive symptoms. To address this gap, a one-year longitudinal study was performed using data collected at three waves from 622 Chinese college students (aged 17-22 years, Mage = 18.16, SD = 1.49, 46.95% males). The results of cross-lagged panel models showed a bidirectional relationship between future time perspective and depressive symptoms, and that sleep problems were a mediating mechanism for these relationships. The results of random intercept cross-lagged panel models showed that at the within-person level, the change of sleep problems and depressive symptoms significantly affected the development of future time perspective, but the reverse effect not significant. Moreover, sleep problems mediated the within-person effect of depressive symptoms on future time perspective. These findings deepen the understanding of the longitudinal relationship between future time perspective, sleep problems and depressive symptoms, and emphasize the important role of sleep health in adolescent mental health and future development.

5.
J Vis Exp ; (210)2024 Aug 30.
Article in English | MEDLINE | ID: mdl-39283143

ABSTRACT

Telomeres, the protective structures at the ends of chromosomes, are crucial for maintaining cellular longevity and genome stability. Their proper function depends on tightly regulated processes of replication, elongation, and damage response. The shelterin complex, especially Telomere Repeat-binding Factor 1 (TRF1) and TRF2, plays a pivotal role in telomere protection and has emerged as a potential anti-cancer target for drug discovery. These proteins bind to the repetitive telomeric DNA motif TTAGGG, facilitating the formation of protective structures and recruitment of other telomeric proteins. Structural methods and advanced imaging techniques have provided insights into telomeric protein-DNA interactions, but probing the dynamic processes requires single-molecule approaches. Tools like magnetic tweezers, optical tweezers, and atomic force microscopy (AFM) have been employed to study telomeric protein-DNA interactions, revealing important details such as TRF2-dependent DNA distortion and telomerase catalysis. However, the preparation of single-molecule constructs with telomeric repetitive motifs continues to be a challenging task, potentially limiting the breadth of studies utilizing single-molecule mechanical methods. To address this, we developed a method to study interactions using full-length human telomeric DNA with magnetic tweezers. This protocol describes how to express and purify TRF2, prepare telomeric DNA, set up single-molecule mechanical assays, and analyze data. This detailed guide will benefit researchers in telomere biology and telomere-targeted drug discovery.


Subject(s)
DNA , Telomere , DNA/chemistry , DNA/metabolism , DNA/genetics , Telomere/metabolism , Telomere/chemistry , Humans , Telomeric Repeat Binding Protein 2/metabolism , Telomeric Repeat Binding Protein 2/chemistry , Telomeric Repeat Binding Protein 2/genetics , Telomere-Binding Proteins/metabolism , Telomere-Binding Proteins/chemistry , Telomere-Binding Proteins/genetics , Single Molecule Imaging/methods , Telomeric Repeat Binding Protein 1/metabolism , Telomeric Repeat Binding Protein 1/chemistry , Telomeric Repeat Binding Protein 1/genetics , Optical Tweezers
6.
Phytochemistry ; 229: 114293, 2024 Sep 28.
Article in English | MEDLINE | ID: mdl-39349233

ABSTRACT

Five undescribed lignans (1-5), along with sixteen known lignans (6-21), were isolated from the roots of Anthriscus sylvestris using small molecule accurate recognition technology (SMART). The structures of the isolated compounds were determined by comprehensive spectroscopic analyses, and the absolute configurations of compounds 3-5 were elucidated by comparison of their calculated and experimental ECD spectra. Compounds 5, 14-15, 19, and 21 exhibited significantly inhibitory effects against hypoxia-stimulated abnormal proliferation of pulmonary arterial smooth muscle cells (PASMCs). Moreover, compounds 5, 14-15, 19, and 21 can significantly restore expression of expression of PASMCs proliferation-related protein, including α-SMA, PCNA, P27, and CyclinD3, which are closely related to cell proliferation.

7.
Heliyon ; 10(17): e37090, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-39286198

ABSTRACT

To explore the effect of interchange spacing on drivers' visual characteristics in the merging areas of interchange, a high-density group of five interchanges on the expressway of Chongqing, China, was selected as the test site. An naturalistic driving test was conducted with 47 participants, and the Tobii Glasses II portable eye tracker was used to collect gaze data during driving. The drivers' fixation field was divided into six areas by applying a K-means dynamic clustering algorithm combined with the actual scenario. Markov chains were used to calculate the drivers' gaze transition probability matrices under different driving conditions, and the analysis of gaze transition behaviors was directed at common spacing interchanges, small spacing interchanges, and composite interchanges. Under the ramp-mainline condition, drivers' fixations were primarily concentrated on the near ahead and the left side areas, with higher rates of repeated fixations on the left rearview mirror and left-side line areas. The average value of fixation duration, saccade distance, and saccade speed of small spacing interchange is higher than common spacing interchange. Additionally, under the mainline condition, the probability of one-step transition and repeated fixation rates significantly increased for the right-side lane areas, and the average values of fixation index and saccade index of small spacing interchange are lower than those of common spacing interchange. The results show that the highest probabilities of repeated fixation by drivers occurred in the near ahead and far ahead areas in the interchange merging areas. Insufficient spacing resulted in more frequent occurrences of zero values in one-step transition probability matrices. The research conclusions provide theoretical support for the optimal design and safe operation of the merging area of high-density interchange group of urban expressway.

8.
Spectrochim Acta A Mol Biomol Spectrosc ; 325: 125139, 2024 Sep 14.
Article in English | MEDLINE | ID: mdl-39299076

ABSTRACT

Multi-branched π-conjugated organic molecules, due to their fascinating structures and unique optical properties, exhibit potential applications in optoelectronics. Herein, series of 4-N,N-diphenylaminostyryl substituted multi-branched truxene compounds (namely TN1, TN2 and TN3) and a truxene-triindole compound (namely N3T3) were synthesized. These compounds are characterized by effective π-extension and remarkably enhanced two-photon absorption (TPA) compared to their less π-conjugated analogues. For truxene compounds, the more the number of the branch, the large the TPA efficiency, and the C3-symmetric three-branched TN3 exhibit the largest TPA. The aromatic triindole unit proves to be a better two-photon fluorophore compared with truxene. The results conclude that the influence of π-conjugation, molecular planarity and intramolecular charge-transfer (ICT) to TPA is far more pronounced than to linear optical properties.

9.
Nat Prod Res ; : 1-7, 2024 Sep 20.
Article in English | MEDLINE | ID: mdl-39301610

ABSTRACT

Phytochemical investigation of the n-butanol extracts of the herbaceous stems of Epheda intermedia led to the isolation of eight flavonoids that included three new flavonoid glycosides (1-3) and five previously reported analogues (4-8). Their structures have been identified on the basis of various spectral data. Besides, all the flavonoids were tested in vitro for their ability to inhibit α-glucosidase under the positive control of acarbose, and the results indicated that none of them exhibited significant inhibitory effect on α-glucosidase at 100 µM.

10.
Molecules ; 29(16)2024 Aug 10.
Article in English | MEDLINE | ID: mdl-39202864

ABSTRACT

Fe-N-C materials have been regarded as one of the potential candidates to replace traditional noble-metal-based electrocatalysts for the oxygen reduction reaction (ORR). It is believed that the structure of carbon support in Fe-N-C materials plays an essential role in highly efficient ORR. However, precisely designing the morphology and surface chemical structure of carbon support remains a challenge. Herein, we present a novel synthetic strategy for the preparation of porous carbon spheres (PCSs) with high specific surface area, well-defined pore structure, tunable morphology and controllable heteroatom doping. The synthesis involves Schiff-based polymerization utilizing octaaminophenyl polyhedral oligomeric silsesquioxane (POSS-NH2) and heteroatom-containing aldehydes, followed by pyrolysis and HF etching. The well-defined pore structure of PCS can provide the confinement field for ferroin and transform into Fe-N-C sites after carbonization. The tunable morphology of PCS can be easily achieved by changing the solvents. The surface chemical structure of PCS can be tailored by utilizing different heteroatom-containing aldehydes. After optimizing the structure of PCS, Fe-N-C loading on N,S-codoped porous carbon sphere (NSPCS-Fe) displays outstanding ORR activity in alkaline solution. This work paves a new path for fabrication of Fe-N-C materials with the desired morphology and well-designed surface chemical structure, demonstrating significant potential for energy-related applications.

11.
Zhongguo Zhong Yao Za Zhi ; 49(14): 3857-3867, 2024 Jul.
Article in Chinese | MEDLINE | ID: mdl-39099359

ABSTRACT

The study investigated the protective effect and mechanism of 2-phenylethyl-beta-glucopyranoside(Phe) from Huaizhong No.1 Rehmannia glutinosa on hypoxic pulmonary hypertension(PH), aiming to provide a theoretical basis for clinical treatment of PAH. Male C57BL/6N mice were randomly divided into normal group, model group, positive drug(bosentan, 100 mg·kg~(-1)) group, and low-and high-dose Phe groups(20 and 40 mg·kg~(-1)). Except for the normal group, all other groups were continuously subjected to model induction in a 10% hypoxic environment for 5 weeks, with oral administration for 14 days starting from the 3rd week. The cardiopulmonary function, right ventricular pressure, cough and asthma index, lung injury, cell apoptosis, oxidative stress-related indicators, immune cells, and phosphatidylinositol 3-kinase(PI3K)/protein kinase B(Akt)/mammalian target of rapamycin(mTOR)/hypoxic inducible factor 1α(HIF-1α) pathway-related proteins or mRNA levels were examined. Furthermore, hypoxia-induced pulmonary arterial smooth muscle cell(PASMC) were used to further explore the mechanism of Phe intervention in PH combined with PI3K ago-nist(740Y-P). The results showed that Phe significantly improved the cardiopulmonary function of mice with PH, decreased right ventricular pressure, cough and asthma index, and lung injury, reduced cell apoptosis, oxidative stress-related indicators, and nuclear levels of phosphorylated Akt(p-Akt) and phosphorylated mTOR(p-mTOR), inhibited the expression levels of HIF-1α and PI3K mRNA and proteins, and maintained the immune cell homeostasis in mice. Further mechanistic studies revealed that Phe significantly reduced the viability and migration ability of hypoxia-induced PASMC, decreased the expression of HIF-1α and PI3K proteins and nuc-lear levels of p-Akt and p-mTOR, and this effect was blocked by 740Y-P. Therefore, it is inferred that Phe may exert anti-PH effects by alleviating the imbalance of oxidative stress and apoptosis in lung tissues and regulating immune levels, and its mechanism may be related to the regulation of the PI3K/Akt/mTOR/HIF-1α pathway. This study is expected to provide drug references and research ideas for the treatment of PH.


Subject(s)
Glucosides , Hypertension, Pulmonary , Hypoxia-Inducible Factor 1, alpha Subunit , Hypoxia , Mice, Inbred C57BL , Phosphatidylinositol 3-Kinases , Proto-Oncogene Proteins c-akt , Rehmannia , TOR Serine-Threonine Kinases , Animals , Male , TOR Serine-Threonine Kinases/metabolism , TOR Serine-Threonine Kinases/genetics , Proto-Oncogene Proteins c-akt/metabolism , Proto-Oncogene Proteins c-akt/genetics , Mice , Hypertension, Pulmonary/drug therapy , Hypertension, Pulmonary/physiopathology , Hypertension, Pulmonary/metabolism , Hypertension, Pulmonary/genetics , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Rehmannia/chemistry , Phosphatidylinositol 3-Kinases/metabolism , Phosphatidylinositol 3-Kinases/genetics , Glucosides/pharmacology , Hypoxia/drug therapy , Hypoxia/physiopathology , Hypoxia/metabolism , Signal Transduction/drug effects , Humans , Drugs, Chinese Herbal/pharmacology , Drugs, Chinese Herbal/administration & dosage , Drugs, Chinese Herbal/chemistry , Apoptosis/drug effects
12.
Soc Sci Med ; 357: 117191, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39116698

ABSTRACT

Life satisfaction refers to an individual' s cognitive evaluation of the overall quality of their life considering the various aspects therein. Although the existing research has demonstrated the between-person relationship between negative life events and life satisfaction based on retrospective measures, less is known about this relationship at the within-person level. A daily diary method could examine this within-person relationship and decrease systematic recall biases. Therefore, this study investigated the link between daily negative life events and daily life satisfaction, as well as the mediating role of perceived stress and the moderating role of trait rumination in 146 young adults (Mage = 20.75, SD = 1.35) using a 14-day daily diary design. Multilevel regression analysis showed that daily negative life events had negative predictive effects on daily life satisfaction. In addition, the multilevel 1-1-1 mediation analysis indicated that daily perceived stress mediated the association between daily negative life events and daily life satisfaction. More importantly, the mediating effect of perceived stress was moderated by trait rumination, with the within-person mediating effect being stronger for individuals with higher than those with lower trait rumination tendencies. These findings contribute to the understanding of the underlying pathways in the relationship between daily negative life events and daily life satisfaction and provide a new perspective for improving individuals' life satisfaction.


Subject(s)
Life Change Events , Personal Satisfaction , Stress, Psychological , Humans , Female , Male , Young Adult , Stress, Psychological/psychology , Diaries as Topic , Adult , Adolescent , Quality of Life/psychology , Surveys and Questionnaires
13.
Water Res ; 265: 122276, 2024 Nov 01.
Article in English | MEDLINE | ID: mdl-39154397

ABSTRACT

Per- and polyfluoroalkyl substances (PFAS) in water requires sufficient removal due to their extreme chemical stability and potential health risk. Membrane separation can be a promising strategy, while membranes with conventional structures used for PFAS removal often face challenges such as limited efficiency and stability. In this study, a novel metal-organic framework (MOF) membrane with local modification of polyamide (PA) was developed by introducing interfacial polymerization process during the construction of lamellar membranes with MOF nanosheets. Benefiting from the dense structure and strong negative surface charge, the PA-modified MOF membrane could effectively remove 11 types of PFAS (five short-chain and six long-chain ones with molecular weights ranging from 214.0 to 514.1 Da), especially displaying high rejections for short-chain PFAS (over 84%), along with a remarkable water permeance of 21.4 L·m⁻²·h⁻¹·bar⁻1. The membrane removal characteristics for PFAS were deeply analyzed by elucidating various rejection mechanisms, with particularly distinguishing the rejection and adsorption capacity. Moreover, the membrane stability was significantly enhanced, demonstrated by the structural integrity after 10 min of ultrasonic treatment and stable separation efficiency over 120 h of continuous filtration. With enhanced surface hydrophilicity and negative charge as well as dense membrane pores, the novel membrane also exhibited more superior anti-fouling performance compared to conventional lamellar and PA membranes, further manifesting advantages for practical applications. This work provides a promising solution for developing high-performance membranes tailored specifically for efficient PFAS removal, addressing a critical need in water treatment.


Subject(s)
Membranes, Artificial , Metal-Organic Frameworks , Water Pollutants, Chemical , Water Purification , Water Pollutants, Chemical/chemistry , Water Purification/methods , Metal-Organic Frameworks/chemistry , Fluorocarbons/chemistry , Adsorption , Nylons/chemistry
14.
J Org Chem ; 89(17): 12658-12667, 2024 Sep 06.
Article in English | MEDLINE | ID: mdl-39159404

ABSTRACT

Nickel/photoredox catalysis has emerged as a powerful platform for exploring nontraditional and challenging cross-couplings. Herein, a metallaphotoredox catalytic protocol has been developed on the basis of a tertiary amine-ligated boryl radical-induced halogen atom transfer process under blue-light irradiation. A wide variety of aryl and heteroaryl bromides featuring different functional groups and pharmaceutical moieties were facilely coupled to rapidly install C(sp3)-enriched aromatic scaffolds. The compatibility of Lewis base-ligated borane with nickel catalysis was well exemplified to extend the chemical space for Ni-catalyzed cross-electrophile coupling.

15.
Forensic Sci Int ; 363: 112186, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39127023

ABSTRACT

Printer source prediction is an important task when examining questioned documents. While some research has provided methods to predict the source printer of documents, with the advent of compatible consumables, printer prediction could become more complex and difficult. Predicting the source printer after replacing cartridges and identifying the source of printer cartridges are unresolved issues that are rarely addressed in current research. Herein, we introduce a novel technique to predict the manufacturer, model, and cartridges of laser printers (i.e., compatible, and original cartridges) used to produce a given document. Document samples produced using eight laser printers and 247 cartridges were collected to establish a dataset. Common manufacturers included HP, Canon, Lenovo, and Epson. After obtaining white-light images and three-dimensional profile images of printed characters, a morphological analysis was conducted by questioned document examiners (QDEs) using microscopy. Microscopic image features across a series of images were also extracted and analyzed using algorithms. Then, six high-dimensional reduction algorithms were used to obtain between- and within-printer variations as well as between- and within-cartridge variations. Finally, we conducted principal component analysis (PCA) and discriminant analysis. For 40 % of the samples, mixed discrimination analysis (MDA) and fixed discrimination analysis (FDA) were employed to predict the manufacturer, model and cartridge of laser printers used to produce the questioned printed document; the remaining 60 % samples comprised the training dataset. In the prediction of manufacturer, model and cartridge, our method achieved mean accuracies of 95.5 %, 97.5 %, and 90.2 %, respectively. Hence, this technique could reasonably aid in predicting the manufacturer, model, and cartridge of a laser printer, even if different cartridges are loaded into printers.

16.
Theranostics ; 14(10): 3945-3962, 2024.
Article in English | MEDLINE | ID: mdl-38994035

ABSTRACT

Rationale: NLRP3 inflammasome is critical in the development and progression of many metabolic diseases driven by chronic inflammation, but its effect on the pathology of postmenopausal osteoporosis (PMOP) remains poorly understood. Methods: We here firstly examined the levels of NLRP3 inflammasome in PMOP patients by ELISA. Then we investigated the possible mechanisms underlying the effect of NLRP3 inflammasome on PMOP by RNA sequencing of osteoblasts treated with NLRP3 siRNA and qPCR. Lastly, we accessed the effect of decreased NLRP3 levels on ovariectomized (OVX) rats. To specifically deliver NLRP3 siRNA to osteoblasts, we constructed NLRP3 siRNA wrapping osteoblast-specific aptamer (CH6)-functionalized lipid nanoparticles (termed as CH6-LNPs-siNLRP3). Results: We found that the levels of NLRP3 inflammasome were significantly increased in patients with PMOP, and were negatively correlated with estradiol levels. NLRP3 knock-down influenced signal pathways including immune system process, interferon signal pathway. Notably, of the top ten up-regulated genes in NLRP3-reduced osteoblasts, nine genes (except Mx2) were enriched in immune system process, and five genes were related to interferon signal pathway. The in vitro results showed that CH6-LNPs-siNLRP3 was relatively uniform with a dimeter of 96.64 ± 16.83 nm and zeta potential of 38.37 ± 1.86 mV. CH6-LNPs-siNLRP3 did not show obvious cytotoxicity and selectively delivered siRNA to bone tissue. Moreover, CH6-LNPs-siNLRP3 stimulated osteoblast differentiation by activating ALP and enhancing osteoblast matrix mineralization. When administrated to OVX rats, CH6-LNPs-siNLRP3 promoted bone formation and bone mass, improved bone microarchitecture and mechanical properties by decreasing the levels of NLRP3, IL-1ß and IL-18 and increasing the levels of OCN and Runx2. Conclusion: NLRP3 inflammasome may be a new biomarker for PMOP diagnosis and plays a key role in the pathology of PMOP. CH6-LNPs-siNLRP3 has potential application for the treatment of PMOP.


Subject(s)
Inflammasomes , Liposomes , NLR Family, Pyrin Domain-Containing 3 Protein , Nanoparticles , Osteoblasts , Osteoporosis, Postmenopausal , Animals , NLR Family, Pyrin Domain-Containing 3 Protein/metabolism , Osteoblasts/drug effects , Osteoblasts/metabolism , Female , Humans , Rats , Inflammasomes/metabolism , Nanoparticles/chemistry , Osteoporosis, Postmenopausal/metabolism , Down-Regulation/drug effects , Rats, Sprague-Dawley , RNA, Small Interfering/administration & dosage , Aptamers, Nucleotide/pharmacology , Aptamers, Nucleotide/administration & dosage , Disease Models, Animal , Middle Aged , Ovariectomy
17.
Sci Rep ; 14(1): 15324, 2024 07 03.
Article in English | MEDLINE | ID: mdl-38961143

ABSTRACT

Diabetic cardiomyopathy (DCM) is a common cardiovascular complication of diabetes, which may threaten the quality of life and shorten life expectancy in the diabetic population. However, the molecular mechanisms underlying the diabetes cardiomyopathy are not fully elucidated. We analyzed two datasets from Gene Expression Omnibus (GEO). Differentially expressed and weighted gene correlation network analysis (WGCNA) was used to screen key genes and molecules. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, and protein-protein interaction (PPI) network analysis were constructed to identify hub genes. The diagnostic value of the hub gene was evaluated using the receiver operating characteristic (ROC). Quantitative real-time PCR (RT-qPCR) was used to validate the hub genes. A total of 13 differentially co-expressed modules were selected by WGCNA and differential expression analysis. KEGG and GO analysis showed these DEGs were mainly enriched in lipid metabolism and myocardial hypertrophy pathway, cytomembrane, and mitochondrion. As a result, six genes were identified as hub genes. Finally, five genes (Pdk4, Lipe, Serpine1, Igf1r, and Bcl2l1) were found significantly changed in both the validation dataset and experimental mice with DCM. In conclusion, the present study identified five genes that may help provide novel targets for diagnosing and treating DCM.


Subject(s)
Computational Biology , Diabetic Cardiomyopathies , Gene Regulatory Networks , Protein Interaction Maps , Diabetic Cardiomyopathies/genetics , Computational Biology/methods , Animals , Mice , Protein Interaction Maps/genetics , Humans , Plasminogen Activator Inhibitor 1/genetics , Gene Expression Profiling , Receptor, IGF Type 1/genetics , Gene Ontology , Gene Expression Regulation
18.
Clin Cancer Res ; 30(18): 4100-4114, 2024 Sep 13.
Article in English | MEDLINE | ID: mdl-39047169

ABSTRACT

PURPOSE: The purpose of the study was to design a pan-cancer gene panel for childhood malignancies and validate it using clinically characterized patient samples. EXPERIMENTAL DESIGN: In addition to 5,275 coding exons, SJPedPanel also covers 297 introns for fusions/structural variations and 7,590 polymorphic sites for copy-number alterations. Capture uniformity and limit of detection are determined by targeted sequencing of cell lines using dilution experiment. We validate its coverage by in silico analysis of an established real-time clinical genomics (RTCG) cohort of 253 patients. We further validate its performance by targeted resequencing of 113 patient samples from the RTCG cohort. We demonstrate its power in analyzing low tumor burden specimens using morphologic remission and monitoring samples. RESULTS: Among the 485 pathogenic variants reported in RTCG cohort, SJPedPanel covered 86% of variants, including 82% of 90 rearrangements responsible for fusion oncoproteins. In our targeted resequencing cohort, 91% of 389 pathogenic variants are detected. The gene panel enabled us to detect ∼95% of variants at allele fraction (AF) 0.5%, whereas the detection rate is ∼80% at AF 0.2%. The panel detected low-frequency driver alterations from morphologic leukemia remission samples and relapse-enriched alterations from monitoring samples, demonstrating its power for cancer monitoring and early detection. CONCLUSIONS: SJPedPanel enables the cost-effective detection of clinically relevant genetic alterations including rearrangements responsible for subtype-defining fusions by targeted sequencing of ∼0.15% of human genome for childhood malignancies. It will enhance the analysis of specimens with low tumor burdens for cancer monitoring and early detection.


Subject(s)
Early Detection of Cancer , Neoplasms , Humans , Neoplasms/genetics , Neoplasms/diagnosis , Neoplasms/pathology , Child , Early Detection of Cancer/methods , Biomarkers, Tumor/genetics , DNA Copy Number Variations , Male , High-Throughput Nucleotide Sequencing/methods , Female , Child, Preschool , Genomics/methods , Adolescent
19.
Environ Sci Technol ; 58(31): 14022-14033, 2024 Aug 06.
Article in English | MEDLINE | ID: mdl-39052879

ABSTRACT

Interlayered thin-film nanocomposite (TFN) membranes have shown the potential to boost nanofiltration performance for water treatment applications including the removal of organic micropollutants (OMPs). However, the effects of substrates have been overlooked when exploiting and evaluating the efficacy of certain kinds of interlayers in tailoring membrane performance. Herein, a series of TFN membranes were synthesized on different porous substrates with identical interlayers of metal-organic framework nanosheets. It was revealed that the interlayer introduction could narrow but not fully eliminate the difference in the properties among the polyamide layers formed on different substrates, and the membrane performance variation was prominent in distinct aspects. For substrates with small pore sizes exerting severe water transport hindrance, the introduced interlayer mainly enhanced membrane water permeance by affording the gutter effect, while it could be more effective in reducing membrane pore size by improving the interfacial polymerization platform and avoiding PA defects when using a large-pore-size substrate. By matching the selected substrates and interlayers well, superior TFN membranes were obtained with simultaneously higher water permeance and OMP rejections compared to three commercial membranes. This study helps us to objectively understand interlayer efficacies and attain performance breakthroughs of TFN membranes for more efficient water treatment.


Subject(s)
Filtration , Membranes, Artificial , Nylons , Water Pollutants, Chemical , Water Purification , Nylons/chemistry , Water Purification/methods , Water Pollutants, Chemical/chemistry , Nanocomposites/chemistry
20.
J Nanobiotechnology ; 22(1): 407, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38987801

ABSTRACT

Segmental bone defects, arising from factors such as trauma, tumor resection, and congenital malformations, present significant clinical challenges that often necessitate complex reconstruction strategies. Hydrogels loaded with multiple osteogenesis-promoting components have emerged as promising tools for bone defect repair. While the osteogenic potential of the Piezo1 agonist Yoda1 has been demonstrated previously, its hydrophobic nature poses challenges for effective loading onto hydrogel matrices.In this study, we address this challenge by employing Yoda1-pretreated bone marrow-derived mesenchymal stem cell (BMSCs) exosomes (Exo-Yoda1) alongside exosomes derived from BMSCs (Exo-MSC). Comparatively, Exo-Yoda1-treated BMSCs exhibited enhanced osteogenic capabilities compared to both control groups and Exo-MSC-treated counterparts. Notably, Exo-Yoda1-treated cells demonstrated similar functionality to Yoda1 itself. Transcriptome analysis revealed activation of osteogenesis-associated signaling pathways, indicating the potential transduction of Yoda1-mediated signals such as ErK, a finding validated in this study. Furthermore, we successfully integrated Exo-Yoda1 into gelatin methacryloyl (GelMA)/methacrylated sodium alginate (SAMA)/ß-tricalcium phosphate (ß-TCP) hydrogels. These Exo-Yoda1-loaded hydrogels demonstrated augmented osteogenesis in subcutaneous ectopic osteogenesis nude mice models and in rat skull bone defect model. In conclusion, our study introduces Exo-Yoda1-loaded GELMA/SAMA/ß-TCP hydrogels as a promising approach to promoting osteogenesis. This innovative strategy holds significant promise for future widespread clinical applications in the realm of bone defect reconstruction.


Subject(s)
Exosomes , Hydrogels , Mesenchymal Stem Cells , Osteogenesis , Osteogenesis/drug effects , Animals , Exosomes/metabolism , Mesenchymal Stem Cells/metabolism , Hydrogels/chemistry , Mice , MAP Kinase Signaling System/drug effects , Signal Transduction/drug effects , Calcium Phosphates/chemistry , Calcium Phosphates/pharmacology , Rats , Male , Alginates/chemistry , Gelatin/chemistry , Cell Differentiation/drug effects , Bone Regeneration/drug effects , Cells, Cultured
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