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1.
Nat Commun ; 15(1): 5811, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38987310

ABSTRACT

Extraintestinal Pathogenic Escherichia coli (ExPEC) pose a significant threat to human and animal health. However, the diversity and antibiotic resistance of animal ExPEC, and their connection to human infections, remain largely unexplored. The study performs large-scale genome sequencing and antibiotic resistance testing of 499 swine-derived ExPEC isolates from China. Results show swine ExPEC are phylogenetically diverse, with over 80% belonging to phylogroups B1 and A. Importantly, 15 swine ExPEC isolates exhibit genetic relatedness to human-origin E. coli strains. Additionally, 49 strains harbor toxins typical of enteric E. coli pathotypes, implying hybrid pathotypes. Notably, 97% of the total strains are multidrug resistant, including resistance to critical human drugs like third- and fourth-generation cephalosporins. Correspondingly, genomic analysis unveils prevalent antibiotic resistance genes (ARGs), often associated with co-transfer mechanisms. Furthermore, analysis of 20 complete genomes illuminates the transmission pathways of ARGs within swine ExPEC and to human pathogens. For example, the transmission of plasmids co-harboring fosA3, blaCTX-M-14, and mcr-1 genes between swine ExPEC and human-origin Salmonella enterica is observed. These findings underscore the importance of monitoring and controlling ExPEC infections in animals, as they can serve as a reservoir of ARGs with the potential to affect human health or even be the origin of pathogens infecting humans.


Subject(s)
Anti-Bacterial Agents , Escherichia coli Infections , Escherichia coli Proteins , Extraintestinal Pathogenic Escherichia coli , Phylogeny , Swine Diseases , Animals , Swine , China/epidemiology , Extraintestinal Pathogenic Escherichia coli/genetics , Extraintestinal Pathogenic Escherichia coli/drug effects , Extraintestinal Pathogenic Escherichia coli/isolation & purification , Extraintestinal Pathogenic Escherichia coli/pathogenicity , Escherichia coli Infections/microbiology , Escherichia coli Infections/veterinary , Swine Diseases/microbiology , Escherichia coli Proteins/genetics , Anti-Bacterial Agents/pharmacology , Humans , Drug Resistance, Multiple, Bacterial/genetics , Plasmids/genetics , Genome, Bacterial/genetics , Whole Genome Sequencing , Microbial Sensitivity Tests , Drug Resistance, Bacterial/genetics , beta-Lactamases/genetics
2.
Biosens Bioelectron ; 55: 106-12, 2014 May 15.
Article in English | MEDLINE | ID: mdl-24368227

ABSTRACT

We describe a droplet-based microfluidic electrochemical sensor using platinum-black (Pt-black) microelectrode. Pt-black microelectrode was generated by electrodeposition of Pt nanoparticles on bare Pt microelectrode. Scanning electron microscope (SEM) image displays a flower-like microstructure of Pt nanoparticels. Electrochemical impedance spectroscopy (EIS) and cyclic voltammetry (CV) indicate that the Pt-black efficiently decreased the charge transfer resistance and improved the electrocatalytic activity towards oxidation of hydrogen peroxide (H2O2). Compared with bare Pt microelectrode, the current response on Pt-black microelectrode increased 10.2 folds. The effect of applied potential and electrodeposition time has been investigated in detail. The proposed sensor was validated by performing enzyme activity assay in flowing droplets. For demonstration, glucose oxidase (GOx) is chosen as the model enzyme, which catalyzes the oxidation of ß-D-glucose to the product H2O2. The enzyme activity of GOx was evaluated by measuring the electrochemical current responding to various glucose concentrations. And the results indicate that this microfluidic sensor holds great potential in fabricating novel glucose sensors with linear response up to 43.5mM. The analytical applications of the droplet-based microfluidic sensor were tested by using human blood serum samples. Reproducibility, interferences, and long-term stability of the modified electrode were also investigated. The present approach shows the feasibility and great potentials in constructing highly sensitive and low-consumption sensors in the field of droplet microfluidics.


Subject(s)
Biosensing Techniques/instrumentation , Blood Glucose/analysis , Conductometry/instrumentation , Glucose Oxidase/chemistry , Microelectrodes , Microfluidic Analytical Techniques/instrumentation , Platinum/chemistry , Blood Glucose/chemistry , Enzymes, Immobilized/chemistry , Equipment Design , Equipment Failure Analysis , Reproducibility of Results , Sensitivity and Specificity
3.
Anal Chim Acta ; 796: 68-74, 2013 Sep 24.
Article in English | MEDLINE | ID: mdl-24016585

ABSTRACT

A simple but robust droplet-based microfluidic system was developed for dose-response enzyme inhibition assay by combining concentration gradient generation method with electrochemical detection method. A slotted-vials array and a tapered tip capillary were used for reagents introduction and concentration gradient generation, and a polydimethylsiloxane (PDMS) microfluidic chip integrated with microelectrodes was used for droplet generation and electrochemical detection. Effects of oil flow rate and surfactant on electrochemical sensing were investigated. This system was validated by measuring dose-response curves of three types of acetylcholinesterase (AChE) inhibitors, including carbamate pesticide, organophosphorus pesticide, and therapeutic drugs regulating Alzheimer's disease. Carbaryl, chlorpyrifos, and tacrine were used as model analytes, respectively, and their IC50 (half maximal inhibitory concentration) values were determined. A whole enzyme inhibition assay was completed in 6 min, and the total consumption of reagents was less than 5 µL. This microfluidic system is applicable to many biochemical reactions, such as drug screening and kinetic studies, as long as one of the reactants or products is electrochemically active.


Subject(s)
Cholinesterase Inhibitors/pharmacology , Electrochemical Techniques/instrumentation , Microfluidic Analytical Techniques/instrumentation , Acetylcholinesterase/metabolism , Animals , Electrophorus , Enzyme Assays/instrumentation , Equipment Design
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