MASISH: a database for gene expression in maize seeds.

UNLABELLED: Grass seeds are complex organs composed by multiple tissues and cell types that develop coordinately to produce a viable embryo. The identification of genes involved in seed development is of great interest, but systematic spatial analyses of gene expression on maize seeds at the cell level have not yet been performed. MASISH is an online database holding information for gene expression spatial patterns in maize seeds based on in situ hybridization experiments. The web-based query interface allows the execution of gene queries and provides hybridization images, published references and information of the analyzed genes. AVAILABILITY: http://masish.uab.cat/.

Heteronuclear and quadrupolar second moment determination of the NQR line of 127I in NaIO4.

This work reports on a theoretical expression of the heteronuclear dipolar second moment (M2IS) of a NQR line of spin 5/2 nuclei. The result is applied to obtain M2IS for the resonance line of 127I in NaIO4, and in addition, an indirect determination of the quadrupolar second moment is given.

Ganglioside hydration study by 2H-NMR: dependence on temperature and water/lipid ratio.

Dynamic properties of 2H2O in samples of ganglioside aggregates hydrated at water/lipid ratios ranging from 25:1 to 8000:1 mole/mole were studied by using deuterium nuclear magnetic resonance (2H-NMR). We present a physical model for the interpretation of the measured spin-spin relaxation times (T2). For all the concentrations studied the model provides evidence for the existence of at least two kinds of water environments: one in which the rotational correlation time is in the range of 10(-9) to 10(-8) s, and a second in which it lies between 10(-11) to 10(-10) s. A detailed study on the temperature dependence was performed for two of the concentrations, one corresponding to the hexagonal phase (100:1 mole/mole) and the other involving a micellar phase (200:1 mole/mole). In the 100:1 2H2O/ganglioside molar ratio sample, most of the water is tightly bound to long cylindrical structures. For the 200: 1 sample, there are on average approximately 30 water molecules tightly bound to the polar head group of each ganglioside molecule. The relative number and dynamics of molecules in this environment are essentially insensitive to temperature variations in the range 220-300K The rest of water molecules are also influenced by the aggregate, having a different mobility from that observed in the free liquid state.

THE SWIMMING OF UNIPOLAR CELLS OF SPIRILLUM VOLUTANS: THEORY AND OBSERVATIONS

Bright-field high-speed cinemicrography was employed to record the swimming of six unipolar cells of Spirillum volutans. A complete set of geometrical parameters for each of these six cells, which are of typical but varying dimensions, was measured experimentally. For each cell, the mean swimming linear and angular speeds were measured for a period representing an exact number of flagellar cycles (at least four and up to 12 cycles). Two independent sets of measurements were carried out for each cell, one relating to the trailing and the other to the leading configuration of the flagellar bundle. The geometry of these cells was numerically modelled with curved isoparametric boundary elements (from the measured geometrical parameters), and an existing boundary element method (BEM) program was applied to predict the mean swimming linear and angular speeds. A direct comparison between the experimentally observed swimming speeds and those of the BEM predictions is made. For a typical cell, a direct comparison of the swimming trajectory, in each of the trailing and the leading flagellar configurations, was also included. Previous resistive force theory (RFT) as well as slender body theory (SBT) models are both restricted to somewhat non-realistic 'slender body' geometries, and they both fail to consider swimming kinematics. The present BEM model, however, is applicable to organisms with arbitrary geometry and correctly accounts for swimming kinematics; hence, it agrees better with experimental observations than do the previous models.

The role of hydrodynamic interaction in the locomotion of microorganisms.

A general Boundary Element Method is presented and benchmarked with existing Slender Body Theory results and reflection solutions for the motion of spheres and slender bodies near plane boundaries. This method is used to model the swimming of a microorganism with a spherical cell body, propelled by a single rotating flagellum. The swimming of such an organism near a plane boundary, midway between two plane boundaries or in the vicinity of another similar organism, is investigated. It is found that only a small increase (less than 10%) results in the mean swimming speed of an organism swimming near and parallel to another identical organism. Similarly, only a minor propulsive advantage (again, less than 10% increase in mean swimming speed) is predicted when an organism swims very close and parallel to plane boundaries (such as a microscopic plate and (or) a coverslip, for example). This is explained in terms of the flagellar propulsive advantage derived from an increase in the ratio of the normal to tangential resistance coefficients of a slender body being offset by the apparently equally significant increase in the cell body drag. For an organism swimming normal to and toward a plane boundary, however, it is predicted that (assuming it is rotating its flagellum, relative to its cell body, with a constant angular frequency) the resulting swimming speed decreases asymptotically as the organism approaches the boundary.

Numerical model for the locomotion of spirilla.

The swimming of trailing, leading, and bipolar spirilla (with realistic flagellar centerline geometries) is considered. A boundary element method is used to predict the instantaneous swimming velocity, counter-rotation angular velocity, and power dissipation of a given organism as functions of time and the geometry of the organism. Based on such velocities, swimming trajectories have been deduced enabling a realistic definition of mean swimming speeds. The power dissipation normalized in terms of the square of the mean swimming speed is considered to be a measure of hydrodynamic efficiency. In addition, kinematic efficiency is defined as the extent of deviation of the swimming motion from that of a previously proposed ideal corkscrew mechanism. The dependence of these efficiencies on the organism's geometry is examined giving estimates of its optimum dimensions. It is concluded that appreciable correlation exists between the two alternative definitions for many of the geometrical parameters considered. Furthermore, the organism having the deduced optimum dimensions closely resembles the real organism as experimentally observed.