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1.
Saudi J Biol Sci ; 28(9): 5168-5174, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34466094

ABSTRACT

Our review focused on nanomaterials-based toxicity evaluation and its exposure to the human and aquatic animals when it was leached and contaminated in the environment. Ecotoxicological assessment and its mechanism mainly affect the skin covering layers and its preventive barriers that protect the foreign particles' skin. Nanoscale materials are essential in the medical field, especially in biomedical and commercial applications such as nanomedicine and drug delivery, mainly in therapeutic treatments. However, various commercial formulations of pharmaceutical drugs are manufactured through a series of clinical trials. The role of such drugs and their metabolites has not met the requirement of an individual's need at the early stage of the treatments except few drugs and medicines with minimal or no side effects. Therefore, biology and medicines are taken up the advantages of nano scaled drugs and formulations for the treatment of various diseases. The present study identifies and analyses the different nanoparticles and their chemical components on the skin and their effects due to penetration. There are advantageous factors available to facilitate positive and negative contact between dermal layers. It creates a new agenda for an established application that is mainly based on skin diseases.

2.
Mol Biotechnol ; 57(5): 475-88, 2015 May.
Article in English | MEDLINE | ID: mdl-25875731

ABSTRACT

DNA helicases are motor proteins that play an essential role in nucleic acid metabolism, by providing a duplex-unwinding function. To improve the drought and salinity tolerance of sugarcane, a DEAD-box helicase gene isolated from pea with a constitutive promoter, Port Ubi 2.3 was transformed into the commercial sugarcane variety Co 86032 through Agrobacterium-mediated transformation, and the transgenics were screened for tolerance to soil moisture stress and salinity. The transgene integration was confirmed through polymerase chain reaction, and the V 0 transgenic events showed significantly higher cell membrane thermostability under normal irrigated conditions. The V 1 transgenic events were screened for tolerance to soil moisture stress and exhibited significantly higher cell membrane thermostability, transgene expression, relative water content, gas exchange parameters, chlorophyll content, and photosynthetic efficiency under soil moisture stress compared to wild-type (WT). The overexpression of PDH45 transgenic sugarcane also led to the upregulation of DREB2-induced downstream stress-related genes. The transgenic events demonstrated higher germination ability and better chlorophyll retention than WT under salinity stress. Our results suggest the possibility for development of increased abiotic stress tolerant sugarcane cultivars through overexpression of PDH45 gene. Perhaps this is the first report, which provides evidence for increased drought and salinity tolerance in sugarcane through overexpression of PDH45.


Subject(s)
DNA Helicases/metabolism , Pisum sativum/enzymology , Plant Proteins/genetics , Plant Proteins/metabolism , Saccharum/physiology , Cell Membrane/chemistry , DNA Helicases/genetics , Droughts , Gene Expression Regulation, Plant , Pisum sativum/genetics , Plants, Genetically Modified/metabolism , Saccharum/genetics , Salinity , Stress, Physiological , Temperature
3.
Plant Sci ; 232: 23-34, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25617320

ABSTRACT

Heat shock proteins (HSPs) have a major role in stress tolerance mechanisms in plants. Our studies have shown that the expression of HSP70 is enhanced under water stress in Erianthus arundinaceus. In this paper, we evaluate the effects of overexpression of EaHSP70 driven by Port Ubi 2.3 promoter in sugarcane. The transgenic events exhibit significantly higher gene expression, cell membrane thermostability, relative water content, gas exchange parameters, chlorophyll content and photosynthetic efficiency. The overexpression of EaHSP70 transgenic sugarcane led to the upregulation of stress-related genes. The transformed sugarcane plants had better chlorophyll retention and higher germination ability than control plants under salinity stress. Our results suggest that EaHSP70 plays an important role in sugarcane acclimation to drought and salinity stresses and its potential for genetic engineering of sugarcane for drought and salt tolerance.


Subject(s)
HSP70 Heat-Shock Proteins/physiology , Saccharum/genetics , Salt Tolerance/genetics , Water/metabolism , Droughts , HSP70 Heat-Shock Proteins/genetics , HSP70 Heat-Shock Proteins/metabolism , Plants, Genetically Modified/metabolism , Plants, Genetically Modified/physiology , Saccharum/metabolism , Saccharum/physiology
4.
Plant Cell Rep ; 34(2): 247-63, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25477204

ABSTRACT

KEY MESSAGE: EaDREB2 overexpressed in sugarcane enhanced tolerance to drought and salinity. When co-transformed with plant DNA helicase gene, DREB2 showed greater level of salinity tolerance than in single-gene transgenics. Drought is one of the most challenging agricultural issues limiting sustainable sugarcane production and can potentially cause up to 50 % yield loss. DREB proteins play a vital regulatory role in abiotic stress tolerance in plants. We previously reported that expression of EaDREB2 is enhanced by drought stress in Erianthus arundinaceus. In this study, we have isolated the DREB2 gene from E. arundinaceus, transformed one of the most popular sugarcane variety Co 86032 in tropical India with EaDREB2 through Agrobacterium-mediated transformation, pyramided the EaDREB2 gene with the gene coding for PDH45 driven by Port Ubi 2.3 promoter through particle bombardment and evaluated the V1 transgenics for soil deficit moisture and salinity stresses. Soil moisture stress was imposed at the tillering phase by withholding irrigation. Physiological, molecular and morphological parameters were used to assess drought tolerance. Salinity tolerance was assessed through leaf disc senescence and bud sprout assays under salinity stress. Our results indicate that overexpression of EaDREB2 in sugarcane enhances drought and salinity tolerance to a greater extent than the untransformed control plants. This is the first report of the co-transformation of EaDREB2 and PDH45 which shows higher salinity tolerance but lower drought tolerance than EaDREB2 alone. The present study seems to suggest that, for combining drought and salinity tolerance together, co-transformation is a better approach.


Subject(s)
DNA Helicases/genetics , Pisum sativum/enzymology , Saccharum/physiology , Transcription Factors/genetics , Base Sequence , Chlorophyll/metabolism , DNA Helicases/metabolism , Gene Expression , Gene Expression Regulation, Plant , Molecular Sequence Data , Pisum sativum/genetics , Plant Leaves/drug effects , Plant Leaves/genetics , Plant Leaves/physiology , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Transpiration/physiology , Plants, Genetically Modified , Promoter Regions, Genetic/genetics , Saccharum/drug effects , Saccharum/genetics , Salinity , Salt Tolerance , Sequence Analysis, DNA , Sodium Chloride/pharmacology , Stress, Physiological , Transcription Factors/metabolism
5.
ScientificWorldJournal ; 2014: 898614, 2014.
Article in English | MEDLINE | ID: mdl-25101327

ABSTRACT

Let f(z) = z + ∑(n=2)(∞) (a)n(z) (n) be analytic in the unit disk with the second coefficient a2 satisfying |a2| = 2b, 0 ≤ b ≤ 1. Sharp radius of Janowski starlikeness is obtained for functions f whose nth coefficient satisfies |a(n)| ≤ cn + d (c, d ≥ 0) or |a(n)| ≤ c/n (c > 0 and n ≥ 3). Other radius constants are also obtained for these functions, and connections with earlier results are made.

6.
J Enzyme Inhib Med Chem ; 26(2): 288-94, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20735159

ABSTRACT

Inhibition of human immunodeficiency virus 1 (HIV-1) protease is an important strategy for the treatment of HIV and acquired immune deficiency syndrome (AIDS). Therefore, HIV-1 protease inhibitory activity of dihydropyranone derivatives has been analyzed with different physico-chemical parameters. In the present work, QSAR studies were performed on a series of 4-hydroxy-5,6-dihydropyran-2-ones to explore the physico-chemical parameters responsible for their HIV-1 protease inhibitory activity. Physico-chemical parameters were calculated using WIN CAChe 6.1. Stepwise multiple linear regression analysis was performed to derive QSAR models which were further evaluated for statistical significance and predictive power by internal and external validation. The selected best QSAR model was having correlation coefficient (R) = 0.875 and cross-validated squared correlation coefficient (Q²) = 0.707. The developed significant QSAR model indicates that hydrophobicity of whole molecule and the substituent present at sixth position of dihydropyranones play an important role in the HIV-1 protease inhibitory activities of 4-hydroxy-5,6-dihydropyran-2-ones.


Subject(s)
Enzyme Activation/drug effects , HIV Protease/metabolism , HIV-1 , Protease Inhibitors/pharmacology , Pyrones/pharmacology , Humans , Inhibitory Concentration 50 , Molecular Structure , Protease Inhibitors/chemical synthesis , Protease Inhibitors/chemistry , Pyrones/chemical synthesis , Pyrones/chemistry , Quantitative Structure-Activity Relationship
7.
J Nanosci Nanotechnol ; 10(2): 755-61, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20352714

ABSTRACT

The stability of embedded Indium (In) nanoclusters (NCs) in silica under thermal annealing and ion irradiation was investigated. The In NCs were prepared by implantation of 890 keV indium ions in silica matrix at room temperature. Post implantation annealing resulted in the shifting of the size distribution to higher side. On the other hand 140 keV Nitrogen ion irradiation at elevated temperature resulted in the reduction of NCs size, with significant narrowing of the size distribution. The paper discusses the results of the study in the light of the models pertaining to the stability of NCs under ion irradiation conditions.

8.
Eur J Med Chem ; 44(3): 1180-7, 2009 Mar.
Article in English | MEDLINE | ID: mdl-18687505

ABSTRACT

HIV-1 (human immunodeficiency virus type-1) is the pathogenic retrovirus and causative agent of AIDS. HIV-1 RT is one of the key enzymes in the duplication of HIV-1. Inhibitors of HIV-1 RT are classified as NNRTIs and NRTIs. NNRTIs bind to a region that is not associated with the active site of the enzyme. Within the NNRTIs category, there is a set of inhibitors commonly referred to as thiazolidinone derivatives. The present 3D-QSAR study attempts to explore the structural requirements of thiazolidinone derivatives for anti-HIV activity. Based on the structures and biodata of previous thiazolidinone analogs, 3D-QSAR studies have been performed with a training set consisting of 96 molecules, which resulted in two reliable computational models, CoMFA and CoMSIA with r(2) values of 0.931 and 0.972, standard error of estimation (SEE) of 0.173 and 0.089, and q(2) values of 0.663 and 0.784, respectively, with the number of partial least-squares (PLS) components being six. It is shown that the steric and electrostatic properties predicted by CoMFA contours and the hydrogen bond acceptor, hydrogen bond donor, and hydrophobic properties predicted by CoMSIA contours are related to anti-HIV activity. The predictive ability of the resultant model was evaluated using a test set comprising of 17 molecules and the predicted r(2) values of CoMFA and CoMSIA models were 0.861 and 0.958, respectively. These models are more significant guide to trace the features that really matter especially with respect to the design of novel compounds.


Subject(s)
Anti-HIV Agents/pharmacology , Reverse Transcriptase Inhibitors/pharmacology , Thiazolidines/pharmacology , Anti-HIV Agents/chemistry , Models, Molecular , Molecular Structure , Quantitative Structure-Activity Relationship , Regression Analysis , Reverse Transcriptase Inhibitors/chemistry , Thiazolidines/chemistry
9.
J Enzyme Inhib Med Chem ; 23(3): 424-31, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18569350

ABSTRACT

Neurodegenerative disorders are consequences of progressive and irreversible loss of neurons due to unwanted apoptosis which involves caspases, a group of cysteine proteases that cleave other proteins and inactivate them. Among several different groups of caspase enzymes, caspases-3 plays a key role in apoptosis and are a therapeutic target for their inhibition. In pursuit of better caspase-3 inhibitors, a quantitative structure-activity relationship (QSAR) analysis was performed on a series of 1,3-dioxo-4-methyl-2,3-dihydro-1H-pyrrolo[3,4-c] quinolines as caspase-3 inhibitors using WIN CAChe 6.1 and Medicinal Chemistry Regression Machine. The best QSAR model was selected and validated by internal and external validation method. The values of statistical data are r = 0.955, F = 72.95, SEE = 0.397, q(2) = 0.885, S(PRESS) = 0.44. The present study reveals that when the conformational minimum energy is increased, and lowest unoccupied molecular orbital energy and highest occupied molecular orbital energy are decreased the biological activity can be increased. On the basis of a selected QSAR model, we designed a new series of 1,3-dioxo-4-methyl-2,3-dihydro-1H-pyrrolo[3,4-c]quinolines compounds, calculated their caspases inhibitory activity and found that the designed compounds were more potent than the existing compounds.


Subject(s)
Caspase Inhibitors , Quantitative Structure-Activity Relationship , Quinolines/pharmacology , Drug Design , Humans , Quinolines/chemistry
10.
J Nanosci Nanotechnol ; 8(2): 689-94, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18464393

ABSTRACT

Nanocrystals (approximately 5 nm) of the semiconducting wide band gap material beta-In2S3 obtained by chemical synthesis through a hydrothermal route were characterized for phase and compositional purity. These nanoparticles exhibited quantum confinement characteristics as revealed by a blue-shifted optical absorption. These quantum dots of beta-In2S3 were electrically driven from a monodisperse colloidal suspension on to conducting glass substrates by Electophoretic Deposition (EPD) technique and nanostructural thin films were obtained. The crystalline and morphological structures of these deposits were investigated by X-ray diffraction and nanoscopic techniques. We report here that certain interesting nanostructural morphologies were observed in the two-dimensional quantum dot assemblies of beta-In2S3. The effect of the controlling parameters on the cluster growth and deposit integrity was also systematically studied through a series of experiments and the results are reported here.


Subject(s)
Indium/chemistry , Nanostructures/chemistry , Quantum Dots , Crystallization , X-Ray Diffraction/methods
11.
Indian J Pharm Sci ; 70(4): 487-90, 2008.
Article in English | MEDLINE | ID: mdl-20046776

ABSTRACT

The present study was aimed to replace the alum type adjuvant for hepatitis B vaccine. The hepatitis B vaccine was encapsulated in poly (DL-lactide-co-glycolide) microspheres by solvent evaporation technique. The formulated microspheres were characterized in terms of morphology, particle size analysis, in vitro release study and in vivo immune response in male Wistar rats. The FT IR spectrum illustrates the characteristics bands of poly (DL-lactide-co-glycolide) microspheres and hepatitis B vaccine at 1750 cm(-1) and 1650 cm(-1), respectively. The hepatitis B vaccine loaded poly (DL-lactide-co-glycolide) microspheres were able to release antigens till day 42. Significant enhancement of specific antibodies to HBsAg was produced till day 90 after a single administration of HBsAg encapsulated poly (DL-lactide-co-glycolide) microspheres. However, the conventional alum adsorbed hepatitis B vaccine was not found to produce any significant specific antibody levels till day 90 after a single dose. The results showed that poly (DL-lactide-co-glycolide) microspheres show potential as an adjuvant for hepatitis B vaccine.

12.
J Pharm Biomed Anal ; 46(2): 391-4, 2008 Jan 22.
Article in English | MEDLINE | ID: mdl-18006264

ABSTRACT

A new, simple, sensitive, precise and robust high-performance thin layer chromatographic (HPTLC) method was developed for the estimation of conessine in herbal extracts and pharmaceutical dosage forms. Analysis of conessine was performed on TLC aluminium plates pre-coated with silica gel 60F-254 as stationary phase. Linear ascending development was carried out in twin trough glass chamber saturated with mobile phase consisting of toluene-ethylacetate-diethyl amine (6.5:2.5:1, v/v/v) at room temperature (25+/-2 degrees C). After derivatized the plate with modified Dragendroff's reagent, Camag TLC scanner III was used for spectrodensitometric scanning and analysis of the plate in absorbance mode at 520 nm. The system was found to give compact spots for conessine (Rf value of 0.82). The data for calibration plots showed good linear relationship with r2=0.9998 in the concentration range of 1-10 microg with respect to peak area. The present method was validated for precision and recovery. The limits of detection and quantification were determined. Statistical analysis of the data showed that the method is reproducible and selective for estimation of conessine.


Subject(s)
Alkaloids/analysis , Chromatography, Thin Layer/methods , Herbal Medicine , Pharmaceutical Preparations/chemistry , Calibration , Dosage Forms , Reproducibility of Results , Sensitivity and Specificity
13.
J Nanosci Nanotechnol ; 7(6): 2087-91, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17654997

ABSTRACT

Semiconductor nanoparticles of Indium Sulphide were synthesized by a hydrothermal method using InCl3 and Na2S. Powder X-ray Diffraction analysis confirmed that the product obtained was nanocrystals of single-phase beta-In2S3. The crystallite size distribution was obtained from the diffraction profile and the average size was approximately 5 nm. The compositional analyses performed on the as-prepared powder showed that the material was devoid of any impurity with an In:S ratio very close to 2:3. A colloid of very fine In2S3 particles was obtained from the as-prepared powder by suspending them in acetonitrile. The optical absorption of this colloid showed evidence of strong quantum confinement of excitons and as a result the particles yielded intense photoluminescence in the violet-blue region. These colloidal particles were then electrophoretically driven on to a transparent conducting substrate to assemble into a nanostructure. A Grazing Incidence X-ray Diffraction analysis of the deposited layer revealed that the preferred orientation noticed in the native powder was removed in the deposit. The surface morphology of the deposit studied using SEM and AFM displayed an inherent ordering behaviour in the clusters organized into a two-dimensional film. The locus of the cluster lines tend to form closed circles, at the nanoscopic as well as microscopic scales, indicative of certain strong neighborhood correlations. Such structures may be expected to exhibit novel correlated properties also.

14.
J Ethnopharmacol ; 112(1): 189-91, 2007 May 30.
Article in English | MEDLINE | ID: mdl-17320318

ABSTRACT

The practice of traditional medicine for the control of fertility in Nilgris is based on the use of plant medicine for many years. The aim of the present study is to evaluate the effect of hydroalcoholic extract of stem bark of Ailanthus excelsa Roxb (Simaroubaceae) (HEA) has been studied in rats to explore its antifertility activity. A strong antiimplantation (72%) and abortifacient activity (56%) was observed at the tested dose levels (200 and 400mg/kg, p.o.). The extract shows further more, significant (P<0.05) increase in uterine weight in immature ovariectomised rats. Simultaneous administration of extract with ethinyl estradiol cause significant antiestrogenic activity. All these observations suggest that hydroalcoholic extract of Ailanthus excelsa has antifertility effect.


Subject(s)
Abortifacient Agents/pharmacology , Ailanthus , Contraceptive Agents/pharmacology , Fertility/drug effects , Animals , Dose-Response Relationship, Drug , Embryo Implantation/drug effects , Estrogen Receptor Modulators/pharmacology , Estrogens/pharmacology , Ethinyl Estradiol/pharmacology , Female , India , Male , Medicine, East Asian Traditional , Organ Size/drug effects , Ovariectomy , Plant Bark , Plant Extracts , Rats , Rats, Wistar , Uterus/drug effects
15.
Bioorg Med Chem Lett ; 17(8): 2197-202, 2007 Apr 15.
Article in English | MEDLINE | ID: mdl-17307357

ABSTRACT

HIV-1 (Human Immunodeficiency Virus Type-1) is the pathogenic retrovirus and causative agent of AIDS. HIV-1 RT is one of the key enzymes in the duplication of HIV-1. Inhibitors of HIV-1 RT are classified as NNRTIs and NRTIs. NNRTIs bind in a region not associated with the active site of the enzyme. Within the NNRTIs category, there is a set of inhibitors commonly referred to as phenyl ethyl thiazolyl thiourea (PETT) derivatives. The present 3D QSAR study attempts to explore the structural requirements of phenyl ethyl thiazolyl thiourea (PETT) derivatives for anti-HIV activity. Based on the structures and biodata of previous PETT analogs, 3D-QSAR (CoMFA) study has been performed with a training set consisting of 60 molecules, which resulted in a reliable computational model with q(2)=0.657, S(PRESS)=0.957, r(2)=0.938, and standard error of estimation (SEE)=0.270 with the number of partial least square (PLS) components being 5. It is shown that the steric and electrostatic properties predicted by CoMFA contours can be related to the anti-HIV activity. The predictive ability of the resultant model was evaluated using a test set comprised of 11 molecules and the predicted r(2)=0.893. This model is a more significant guide to trace the features that really matter especially with respect to the design of novel compounds.


Subject(s)
Anti-HIV Agents/chemistry , Drug Design , Quantitative Structure-Activity Relationship , Thiazoles/chemistry , Triazoles/chemistry , Anti-HIV Agents/pharmacology , Computational Biology , Humans , Models, Molecular , Reverse Transcriptase Inhibitors/chemistry , Reverse Transcriptase Inhibitors/pharmacology , Static Electricity , Thiazoles/pharmacology , Thiourea/analogs & derivatives , Triazoles/pharmacology
16.
Pharmazie ; 59(9): 720-1, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15497756

ABSTRACT

Two simple and sensitive spectrophotometric methods (A and B) for the determination of raloxifene hydrochloride in bulk samples and pharmaceutical formulations are described. Method A is based on the oxidation of the drug with ferric chloride and coupling with potassium ferric cyanide. Method B is based on reduction of the drug with Fehling's reagent. Bluish green color formed in method A absorbs at 735 nm and brown color produced in method B absorbs at 430 nm.


Subject(s)
Raloxifene Hydrochloride/analysis , Selective Estrogen Receptor Modulators/analysis , Chemistry, Pharmaceutical , Chlorides , Ferric Compounds , Indicators and Reagents , Oxidation-Reduction , Reference Standards , Solutions , Spectrophotometry, Ultraviolet , Tablets
17.
J Cell Biol ; 157(2): 291-302, 2002 Apr 15.
Article in English | MEDLINE | ID: mdl-11956230

ABSTRACT

The cytoskeletal changes that alter cellular morphogenesis and motility depend upon a complex interplay among molecules that regulate actin, myosin, and other cytoskeletal components. The Rho family of GTP binding proteins are important upstream mediators of cytoskeletal organization. Gem and Rad are members of another family of small GTP binding proteins (the Rad, Gem, and Kir family) for which biochemical functions have been mostly unknown. Here we show that Gem and Rad interface with the Rho pathway through association with the Rho effectors, Rho kinase (ROK) alpha and beta. Gem binds ROKbeta independently of RhoA in the ROKbeta coiled-coil region adjacent to the Rho binding domain. Expression of Gem inhibited ROKbeta-mediated phosphorylation of myosin light chain and myosin phosphatase, but not LIM kinase, suggesting that Gem acts by modifying the substrate specificity of ROKbeta. Gem or Rad expression led to cell flattening and neurite extension in N1E-115 neuroblastoma cells. In interference assays, Gem opposed ROKbeta- and Rad opposed ROKalpha-mediated cell rounding and neurite retraction. Gem did not oppose cell rounding initiated by ROKbeta containing a deletion of the Gem binding region, demonstrating that Gem binding to ROKbeta is required for the effects observed. In epithelial or fibroblastic cells, Gem or Rad expression resulted in stress fiber and focal adhesion disassembly. In addition, Gem reverted the anchorage-independent growth and invasiveness of Dbl-transformed fibroblasts. These results identify physiological roles for Gem and Rad in cytoskeletal regulation mediated by ROK.


Subject(s)
Immediate-Early Proteins/metabolism , Monomeric GTP-Binding Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Signal Transduction , ras Proteins/metabolism , rhoA GTP-Binding Protein/metabolism , 3T3 Cells , Actins/metabolism , Animals , Blotting, Western , COS Cells , Cell Transformation, Neoplastic , Cytoskeleton/metabolism , Feedback, Physiological , Humans , Intracellular Signaling Peptides and Proteins , Mice , Myosin Light Chains/metabolism , Neoplasm Invasiveness , Neurites/enzymology , Neurites/metabolism , Neuroblastoma/enzymology , Neuroblastoma/metabolism , Neuroblastoma/pathology , Phosphorylation , Protein Serine-Threonine Kinases/antagonists & inhibitors , Saccharomyces cerevisiae , Tumor Cells, Cultured , Two-Hybrid System Techniques , rho-Associated Kinases , rhoA GTP-Binding Protein/antagonists & inhibitors
19.
Nucleic Acids Res ; 29(1): 214-8, 2001 Jan 01.
Article in English | MEDLINE | ID: mdl-11125095

ABSTRACT

The Protein Data Bank (PDB; http://www.rcsb.org/pdb/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the data uniformity project that is underway to address the inconsistency in PDB data.


Subject(s)
Databases, Factual , Proteins/chemistry , Information Storage and Retrieval , Internet , Magnetic Resonance Spectroscopy , Protein Conformation
20.
Mol Biol Cell ; 10(12): 4033-41, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10588641

ABSTRACT

The docking and fusion of cargo-containing vesicles with target membranes of eukaryotic cells is mediated by the interaction of SNARE proteins present on both vesicle and target membranes. In many cases, the target membrane SNARE, or t-SNARE, exists as a complex of syntaxin with a member of the SNAP-25 family of palmitoylated proteins. We have identified a novel human kinase SNAK (SNARE kinase) that specifically phosphorylates the nonneuronal t-SNARE SNAP-23 in vivo. Interestingly, only SNAP-23 that is not assembled into t-SNARE complexes is phosphorylated by SNAK, and phosphorylated SNAP-23 resides exclusively in the cytosol. Coexpression with SNAK significantly enhances the stability of unassembled SNAP-23, and as a consequence, the assembly of newly synthesized SNAP-23 with syntaxin is augmented. These data demonstrate that phosphorylation of SNAP-23 by SNAK enhances the kinetics of t-SNARE assembly in vivo.


Subject(s)
Carrier Proteins/metabolism , Membrane Proteins/metabolism , Protein Serine-Threonine Kinases/genetics , Vesicular Transport Proteins , HeLa Cells , Humans , Phosphorylation , Protein Processing, Post-Translational , Protein Serine-Threonine Kinases/isolation & purification , Protein Serine-Threonine Kinases/metabolism , Qa-SNARE Proteins , Qb-SNARE Proteins , Qc-SNARE Proteins , SNARE Proteins
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