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1.
BMC Genom Data ; 25(1): 81, 2024 Sep 03.
Article in English | MEDLINE | ID: mdl-39227788

ABSTRACT

OBJECTIVES: The two oyster species studied hold considerable economic importance for artisanal harvest (Crassostrea rhizophorae) and aquaculture (Crassostrea gasar). Their draft genomes will play an important role in the application of genomic methods such as RNAseq, population-based genomic scans aiming at addressing expression responses to pollution stress, adaptation to salinity and temperature variation, and will also permit investigating the genetic bases and enable marker-assisted selection of economically important traits like shell and mantle coloration and resistance to temperature and disease. DATA DESCRIPTION: The draft assembly size of Crassostrea gasar is 506 Mbp, and of Crassostrea rhizophorae is 584 Mbp with scaffolds N50 of 11,3 Mbp and 4,9 Mbp, respectively. The general masked bases by RepeatMasker in both genomes were highly similar using different datasets. The masked bases varied from 9.41% in C. gasar to 10.05% in C. rhizophorae and 42.85% in C. gasar to 44.44% in C. rhizophorae using Dfam and RepeatModeler datasets, respectively. Functional annotation with eggNog resulted in 34,693 annotated proteins in C. rhizophorae and 26,328 in C. gasar. BUSCO analysis shows that almost 99% of genes (5,295) are complete in relation to the mollusk orthologous genes dataset (mollusca_odb10).


Subject(s)
Crassostrea , Genome , Crassostrea/genetics , Crassostrea/growth & development , Animals , Genome/genetics , Aquaculture/methods , Molecular Sequence Annotation , Genomics/methods , Atlantic Ocean
2.
Sci Rep ; 14(1): 20405, 2024 09 02.
Article in English | MEDLINE | ID: mdl-39223179

ABSTRACT

The depths of the North Atlantic Ocean host a species-rich fauna providing heterogeneous habitats from thermal vent fields to cold-water coral reefs. With the increasing threat of destruction of deep-sea habitats due to human impacts, such as demersal fishing and the beginning of deep-sea mining, an analysis of the diversity and distribution of species is crucial for conservation efforts. Brittle stars occur in high biomasses, contributing to the biodiversity of the seafloor. Specimens were collected during several scientific expeditions to gain a more detailed insight into the brittle star diversity in the North Atlantic Ocean. An integrative approach to identify the species with DNA barcoding (mtCOI) in combination with morphological studies revealed 24 species. Most species have been previously identified in the North Atlantic, but sequences for 13 species are newly added to public repositories. Additionally, the MALDI-TOF-MS proteomic analysis was successfully applied for 197 specimens with known COI barcodes. Results are congruent with other molecular species delimitations demonstrating the functionality of proteomics for the identification of brittle stars. This dataset significantly expands our understanding of the taxonomic and genetic diversity of brittle stars and contributes to publicly available data. It emphasizes the importance of considering habitat heterogeneity for large scale patterns of biodiversity.


Subject(s)
Biodiversity , DNA Barcoding, Taxonomic , Ecosystem , Animals , Atlantic Ocean , Echinodermata/genetics , Echinodermata/classification , Phylogeny , Proteomics/methods
3.
Proc Biol Sci ; 291(2030): 20240823, 2024 Jan.
Article in English | MEDLINE | ID: mdl-39255840

ABSTRACT

Most deep-ocean life relies on organic carbon from the surface ocean. While settling primary production rapidly attenuates in the water column, pulses of organic material can be quickly transported to depth in the form of food falls. One example of fresh material that can reach great depths across the tropical Atlantic Ocean and Caribbean Sea is the pelagic macroalgae Sargassum. However, little is known about the deep-ocean organisms able to use this food source. Here, we encountered the isopod Bathyopsurus nybelini at depths 5002-6288 m in the Puerto Rico Trench and Mid-Cayman Spreading Center using the Deep Submergence Vehicle Alvin. In most of the 32 observations, the isopods carried fronds of Sargassum. Through an integrative suite of morphological, DNA sequencing, and microbiological approaches, we show that this species is adapted to feed on Sargassum by using a specialized swimming stroke, having serrated and grinding mouthparts, and containing a gut microbiome that provides a dietary contribution through the degradation of macroalgal polysaccharides and fixing nitrogen. The isopod's physiological, morphological, and ecological adaptations demonstrate that vertical deposition of Sargassum is a direct trophic link between the surface and deep ocean and that some deep-sea organisms are poised to use this material.


Subject(s)
Isopoda , Sargassum , Sargassum/physiology , Isopoda/physiology , Animals , Atlantic Ocean , Puerto Rico , Feeding Behavior , Gastrointestinal Microbiome , Food Chain , Caribbean Region
4.
PLoS One ; 19(9): e0308626, 2024.
Article in English | MEDLINE | ID: mdl-39240839

ABSTRACT

Cultivated beet (Beta vulgaris L. ssp. vulgaris) originated from sea beet (B. vulgaris ssp. maritima (L.) Arcang), a wild beet species widely distributed along the coasts of the Mediterranean Sea and Atlantic Ocean, as well as northern Africa. Understanding the evolution of sea beet will facilitate its efficient use in sugarbeet improvement. We used SNPs (single nucleotide polymorphisms) covering the whole genome to analyze 599 sea beet accessions collected from the north Atlantic Ocean and Mediterranean Sea coasts. All B. maritima accessions can be grouped into eight clusters with each corresponding to a specific geographic region. Clusters 2, 3 and 4 with accessions mainly collected from Mediterranean coasts are genetically close to each other as well as to Cluster 6 that contained mainly cultivated beet. Other clusters were relatively distinct from cultivated beets with Clusters 1 and 5 containing accessions from north Atlantic Ocean coasts, Clusters 7 and Cluster 8 mainly have accessions from northern Egypt and southern Europe, and northwest Morocco, respectively. Distribution of B. maritima subpopulations aligns well with the direction of marine currents that was considered a main dynamic force in spreading B. maritima during evolution. Estimation of genetic diversity indices supported the formation of B. maritima subpopulations due to local genetic drift, historic migration, and limited gene flow. Our results indicated that B. maritima originated from southern Europe and then spread to other regions through marine currents to form subpopulations. This research provides vital information for conserving, collecting, and utilizing wild sea beet to sustain sugarbeet improvement.


Subject(s)
Beta vulgaris , Gene Flow , Genetic Drift , Polymorphism, Single Nucleotide , Beta vulgaris/genetics , Mediterranean Sea , Atlantic Ocean , Genetic Variation
5.
An Acad Bras Cienc ; 96(suppl 1): e20231051, 2024.
Article in English | MEDLINE | ID: mdl-39258693

ABSTRACT

Under two detection schemes, this study analyzes one of the most destructive weather systems - the explosive cyclones - in the South Atlantic, from 2010 to 2020. Then, two methods are presented to study these systems: the Observational Method (OBSM) and the Automated Method (AUTM). The first uses visual analysis of the mean sea level pressure (mslp) fields and functions to identify the local minimums using the Grid Analysis and Display (GrADS) software. The second utilizes a function from OpenGrADS called mfhilo. It shows the local minimum in the grid using laplacian, magnitude, and percentile. Two shell algorithms for data manipulation are used for the AUTM: one to trace the cyclones' trajectories according to a previously defined fixed area and the other to separate them into explosives. The OBSM methodology showed 271 cases averaging 25 yearly and revealed important characteristics regarding the intensities. According to AUTM's methodology, from the 2705 ordinary cyclone cases identified, 299 are explosives. There is a clear seasonality pattern in the systems' distribution along South America, similar to OBSM, but more highlighted. In summer, they concentrate at high latitudes, while in winter and spring, they are assembled near southern Brazilian and Uruguayan coasts.


Subject(s)
Cyclonic Storms , Seasons , Brazil , Atlantic Ocean , Algorithms , Environmental Monitoring/methods , Explosive Agents/analysis
6.
PeerJ ; 12: e17666, 2024.
Article in English | MEDLINE | ID: mdl-39157769

ABSTRACT

Ontocetus is one of the most notable extinct odobenines owing to its global distribution in the Northern Hemisphere. Originating in the Late Miocene of the western North Pacific, this lineage quickly spread to the Atlantic Ocean during the Pliocene, with notable occurrences in England, Belgium, The Netherlands, Morocco and the eastern seaboard of the United States. Reassessment of a pair of mandibles from the Lower Pleistocene of Norwich (United Kingdom) and a mandible from the Upper Pliocene of Antwerp (Belgium) that were referred to as Ontocetus emmonsi reveals existences of features of both Ontocetus and Odobenus. The presence of four post-canine teeth, a lower canine larger than the cheek-teeth and a lower incisor confirms the assignment to Ontocetus; simultaneously, characteristics such as a fused and short mandibular symphysis, a well-curved mandibular arch and thin septa between teeth align with traits usually found in Odobenus. Based on a combination of these characters, we describe Ontocetus posti, sp. nov. Its mandibular anatomy suggests, a better adaptation to suction-feeding than what was previously described in the genus suggesting that Ontocetus posti sp. nov. likely occupied a similar ecological niche to the extant walrus Odobenus rosmarus. Originating from the North Pacific Ocean, Ontocetus most likely dispersed via the Central American Seaway. Although initially discovered in the Lower Pliocene deposits of the western North Atlantic, Ontocetus also left its imprint in the North Sea basin and Moroccan Plio-Pleistocene deposits. The closure of the Isthmus of Panama during the Mio-Pliocene boundary significantly impacted the contemporary climate, inducing global cooling. This event constrained Ontocetus posti in the North Sea basin leaving the taxon unable to endure the abrupt climate changes of the Early Pleistocene, ultimately going extinct before the arrival of the extant counterpart, Odobenus rosmarus.


Subject(s)
Fossils , Walruses , Animals , Walruses/physiology , Walruses/anatomy & histology , Atlantic Ocean , Mandible/anatomy & histology , Caniformia/physiology , Caniformia/anatomy & histology , Feeding Behavior/physiology , Adaptation, Physiological/physiology
7.
Mar Pollut Bull ; 206: 116741, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39089204

ABSTRACT

This study explores microplastic and cellulosic microparticle occurrences in the NE Atlantic, focusing on the Porcupine Bank Canyon and Porcupine Seabight. Water samples from depths ranging between 605 and 2126 m and Lophelia pertusa coral samples from 950 m depth were analysed. Microparticles were detected in deep-water habitats, with concentrations varying from 2.33 to 9.67 particles L-1 in the Porcupine Bank Canyon, notably lower at greater depths. This challenges the assumption of deeper habitats solely acting as microplastic sinks. We also found evidence of microparticle adsorption and ingestion by L. pertusa. The presence of microparticles in cold-water corals underscores their vulnerability to pollutants. Furthermore, the dominance of rayon microparticles in both water and coral samples raises questions about marine pollution sources, potentially linked to terrestrial origins. This research emphasises the critical need for comprehensive exploration and conservation efforts in deep-sea environments, especially to protect vital ecosystems like L. pertusa reefs.


Subject(s)
Anthozoa , Environmental Monitoring , Microplastics , Water Pollutants, Chemical , Animals , Microplastics/analysis , Water Pollutants, Chemical/analysis , Atlantic Ocean , Ecosystem , Cellulose/analysis , Coral Reefs
8.
Mar Environ Res ; 200: 106653, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39094430

ABSTRACT

Along the northern Mid-Atlantic Ridge (nMAR), in habitats under moderate (<10 °C) hydrothermal influence on the Snake Pit vent field (SP), large assemblages dominated by Bathymodiolin mussels remain poorly characterised, contrary to those in warmer habitats dominated by gastropods and alvinocaridid shrimps that were recently described. In this study, we assessed and compared the population structure, biomass, diversity and trophic interactions of two Bathymodiolus puteoserpentis assemblages and their associated fauna at SP. Three sampling units distanced by 30 cm were sampled in 2014 during the BICOSE cruise at the top of the Moose site (''Elan'' site), while few meters further down three others, distanced by ∼1 m were obtained in 2018 during the BICOSE 2 cruise at the edifice's base. We observed a micro-scale heterogeneity between these six sampling units partially explained by temperature variations, proximity to hydrothermal fluids and position on the edifice. Meiofauna dominate or co-dominate most of the sampling units, with higher densities at the base of the edifice. In terms of macrofauna, high abundance of Pseudorimula midatlantica gastropods was observed at the top of the vent edifice, while numerous Ophioctenella acies ophiuroids were found at the base. Contrary to what was expected, the apparent health and abundance of mussels seems to indicate a current climax stage of the community. However, the modification of B. puteoserpentis isotopic signatures, low number of juveniles decreasing over the two years and observations made during several French cruises in the study area raise questions about the fate of the B. puteoserpentis population over time, which remains to be verified in a future sampling campaign.


Subject(s)
Ecosystem , Hydrothermal Vents , Animals , Atlantic Ocean , Biodiversity , Bivalvia/physiology , Ecology , Biomass , Environmental Monitoring , Mytilidae/physiology
9.
PLoS One ; 19(8): e0304347, 2024.
Article in English | MEDLINE | ID: mdl-39116053

ABSTRACT

Parasmittina is the most representative cheilostome genus of the family Smittinidae, often reported in the fouling non-indigenous marine community. Here, we present a review of Parasmittina species reported in the Southwestern Atlantic including the characterization of one species from Argentina (P. dubitata) and ten from the Brazilian coast: P. abrolhosensis, P. alba, P. bimucronata, P. ligulata comb. nov., P. longirostrata, P. pinctatae, P. serrula, P. simpulata, P. winstonae and the new species Parasmittina falciformis sp. nov. The new species is characterized by a smooth distally primary orifice with 1-2 oral spines, large lyrula, serrated condyles with hooked tips, and two types of avicularia-small and subtriangular and large sublanceolate. This study does not recognize four species previous recorded in Brazil: reports of P. betamorphaea and P. trispinosa are now assigned to P. pinctatae; records of P. munita belong to P. falciformis sp. nov.; and reports of P. spathulata encompass at least two taxa, including P. abrolhosensis and P. simpulata. In this study, five species complexes (P. alba, P. longirostrata, P. serrula, P. simpulata and P. winstonae) were identified and require further investigations. While six species characterized here were first described based on specimens from the Southwestern Atlantic (P. abrolhosensis, P. alba, P. dubitata, P. ligulata comb. nov., P. simpulata and P. falciformis sp. nov.), the remaining species are mainly known from the Indo-Pacific. These taxa are here recognized as exotic (P. longirostrata) and cryptogenic (P. bimucronata, P. pinctatae, P. serrula and P. winstonae) in the studied area. Most of the non-native taxa are widespread along the Brazilian coast, growing on both artificial and natural surfaces, indicating that they are well-established in the area. As non-native bryozoans can negatively influence the environment, affecting human economic activities and beach usage, further studies on the fauna presented here are suggested to determine the origin of these taxa and help prevent bioinvasion events along the SW Atlantic.


Subject(s)
Bryozoa , Animals , Atlantic Ocean , Brazil , Bryozoa/classification , Bryozoa/anatomy & histology , Phylogeny , Argentina , Biodiversity , Species Specificity
10.
Commun Biol ; 7(1): 1015, 2024 Aug 19.
Article in English | MEDLINE | ID: mdl-39160260

ABSTRACT

The deep-sea remains the biggest challenge to biodiversity exploration, and anthropogenic disturbances extend well into this realm, calling for urgent management strategies. One of the most diverse, productive, and vulnerable ecosystems in the deep sea are sponge grounds. Currently, environmental DNA (eDNA) metabarcoding is revolutionising the field of biodiversity monitoring, yet complex deep-sea benthic ecosystems remain challenging to assess even with these novel technologies. Here, we evaluate the effectiveness of whole-community metabarcoding to characterise metazoan diversity in sponge grounds across the North Atlantic by leveraging the natural eDNA sampling properties of deep-sea sponges themselves. We sampled 97 sponge tissues from four species across four North-Atlantic biogeographic regions in the deep sea and screened them using the universal COI barcode region. We recovered unprecedented levels of taxonomic diversity per unit effort, especially across the phyla Chordata, Cnidaria, Echinodermata and Porifera, with at least 406 metazoan species found in our study area. These assemblages identify strong spatial patterns in relation to both latitude and depth, and detect emblematic species currently employed as indicators for these vulnerable habitats. The remarkable performance of this approach in different species of sponges, in different biogeographic regions and across the whole animal kingdom, illustrates the vast potential of natural samplers as high-resolution biomonitoring solutions for highly diverse and vulnerable deep-sea ecosystems.


Subject(s)
Biodiversity , DNA Barcoding, Taxonomic , Porifera , Porifera/genetics , Porifera/classification , Animals , DNA Barcoding, Taxonomic/methods , Atlantic Ocean , DNA, Environmental/analysis , Ecosystem
11.
An Acad Bras Cienc ; 96(3): e20230490, 2024.
Article in English | MEDLINE | ID: mdl-39166615

ABSTRACT

Bioseston is a heterogeneous assemblage of bacterioplankton, phytoplankton, zooplankton, and planktonic debris. A detailed knowledge of biosestons is essential for understanding the dynamics of trophic flows in marine ecosystems. The distributional features of seston biomass in plankton (micro- and mesoplankton) in the Southwest Atlantic Ocean (Rio de Janeiro State, Brazil) were analyzed using stratified samples gathered to a depth of 2,400 m during night time. The horizontal pattern of biomass distribution was analyzed vis-a-vis station depth during both wet and dry periods, with higher values recorded in the continental shelf than in the slope, confirming the terrestrial contribution of nutrient sources to the marine environment. This horizontal variation reinforces the occurrence of seasonal vortices in Cabo Frio and Cabo de São Tomé on the central coast of Brazil. Environmental variables reflect the hydrological signatures of the water masses along the Brazilian coast. The largest seston biomass was related to high temperatures, salinities, and low inorganic nutrient concentrations in tropical and South Atlantic central waters. The observed distribution patterns suggest that seston biomass in plankton in the region may be structured based on partitioned horizontal and vertical habitats and food resources.


Subject(s)
Biomass , Plankton , Seasons , Atlantic Ocean , Brazil , Plankton/growth & development , Plankton/classification , Plankton/physiology , Animals , Ecosystem , Phytoplankton/classification , Phytoplankton/growth & development , Phytoplankton/physiology , Spatio-Temporal Analysis
12.
An Acad Bras Cienc ; 96(suppl 1): e20231342, 2024.
Article in English | MEDLINE | ID: mdl-39166612

ABSTRACT

The present study provides a detailed record of foraminiferal fauna and their ecological implications from surface sediments from Atlantic shelf of Tierra del Fuego, Argentina. The foraminiferal assemblage is mostly composed by four main hyaline genera, such as Cibicidoides, Cibicides, Globocassidulina and Buccella, which allowed the identification of three environmental zones. Zone 1 (Z1, 37 to 90 m) encompasses the eastern Beagle Channel and San Sebastian Bay. The assemblage reflected well-oxygenated marine inner shelf habitat, adapted to cold temperate waters. Zone 2 (Z2, up to 98.4 m), is located around the southern tip of Tierra del Fuego. The assemblage suggested a deeper marine environment, well oxygenated and with higher energy, probably due to the effect of tides and mainly by the influence of Malvinas Current. Finally, Zone 3 (Z3, up to 195 m) is located furthest from the Atlantic coast and the assemblage suggested an environment characteristic of outer shelf, with well-oxygenated cold waters and high-energy environment, reflected by species adhered to the substrate and coarse sediments. The distribution and abundance of certain species showed the influence of the Malvinas Current, while others evidenced a contribution of the Cape Horn waters.


Subject(s)
Biodiversity , Foraminifera , Geologic Sediments , Atlantic Ocean , Foraminifera/classification , Argentina , Population Density , Ecosystem
13.
Proc Biol Sci ; 291(2029): 20241183, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39163979

ABSTRACT

In the Atlantic Arctic, bowhead whales (Balaena mysticetus) were nearly exterminated by European whalers between the seventeenth and nineteenth centuries. The collapse of the East Greenland-Svalbard-Barents Sea population, from an estimated 50 000 to a few hundred individuals, drastically reduced predation on mesozooplankton. Here, we tested the hypothesis that this event strongly favoured the demography of the little auk (Alle alle), a zooplanktivorous feeder competitor of bowhead whales and the most abundant seabird in the Arctic. To estimate the effect of bowhead whaling on little auk abundance, we modelled the trophic niche overlap between the two species using deterministic simulations of mesozooplankton spatial distribution. We estimated that bowhead whaling could have led to a 70% increase in northeast Atlantic Arctic little auk populations, from 2.8 to 4.8 million breeding pairs. While corresponding to a major population increase, this is far less than predicted by previous studies. Our study illustrates how a trophic shift can result from the near extirpation of a marine megafauna species, and the methodological framework we developed opens up new opportunities for marine trophic modelling.


Subject(s)
Food Chain , Animals , Arctic Regions , Bowhead Whale/physiology , Population Dynamics , Atlantic Ocean , Models, Biological , Zooplankton/physiology , Predatory Behavior , Greenland
14.
Sci Rep ; 14(1): 19342, 2024 08 20.
Article in English | MEDLINE | ID: mdl-39164316

ABSTRACT

Environmental gradients in the sea may coincide with phenotypic or genetic gradients resulting from an evolutionary balance between selection and dispersal. The population differentiation of the swimming crab, Liocarcinus depurator, an important by-catch species in the Mediterranean Sea and North-East Atlantic, was assessed using both genetic and morphometric approaches. A total of 472 specimens were collected along its distribution area, and 17 morphometric landmarks, one mitochondrial gene (COI) and 11 polymorphic microsatellite markers were scored in 350, 287 and 280 individuals, respectively. Morphometric data lacked significant differences, but genetic analyses showed significant genetic differentiation between Atlantic and Mediterranean populations, with a steeper gradient in COI compared to microsatellite markers. Interestingly, nuclear differentiation was due to an outlier locus with a gradient in the Atlantic-Mediterranean transition area overlapping with the mtDNA gradient. Such overlapping clines are likely to be maintained by natural selection. Our results suggest a scenario of past isolation with local adaptation and secondary contact between the two basins. Local adaptation during the process of vicariance may reinforce genetic differentiation at loci maintained by environmental selection even after secondary contact.


Subject(s)
Brachyura , DNA, Mitochondrial , Microsatellite Repeats , Animals , Brachyura/genetics , Mediterranean Sea , Microsatellite Repeats/genetics , DNA, Mitochondrial/genetics , Atlantic Ocean , Mitochondria/genetics , Genetic Variation , Genetics, Population , Cell Nucleus/genetics , Selection, Genetic
15.
Nat Commun ; 15(1): 6297, 2024 Aug 01.
Article in English | MEDLINE | ID: mdl-39090106

ABSTRACT

Krill are vital as food for many marine animals but also impacted by global warming. To learn how they and other zooplankton may adapt to a warmer world we studied local adaptation in the widespread Northern krill (Meganyctiphanes norvegica). We assemble and characterize its large genome and compare genome-scale variation among 74 specimens from the colder Atlantic Ocean and warmer Mediterranean Sea. The 19 Gb genome likely evolved through proliferation of retrotransposons, now targeted for inactivation by extensive DNA methylation, and contains many duplicated genes associated with molting and vision. Analysis of 760 million SNPs indicates extensive homogenizing gene-flow among populations. Nevertheless, we detect signatures of adaptive divergence across hundreds of genes, implicated in photoreception, circadian regulation, reproduction and thermal tolerance, indicating polygenic adaptation to light and temperature. The top gene candidate for ecological adaptation was nrf-6, a lipid transporter with a Mediterranean variant that may contribute to early spring reproduction. Such variation could become increasingly important for fitness in Atlantic stocks. Our study underscores the widespread but uneven distribution of adaptive variation, necessitating characterization of genetic variation among natural zooplankton populations to understand their adaptive potential, predict risks and support ocean conservation in the face of climate change.


Subject(s)
Adaptation, Physiological , Euphausiacea , Genomics , Animals , Euphausiacea/genetics , Atlantic Ocean , Adaptation, Physiological/genetics , Mediterranean Sea , Polymorphism, Single Nucleotide , Genome , Zooplankton/genetics , Gene Flow , Genetic Variation
16.
Commun Biol ; 7(1): 929, 2024 Aug 02.
Article in English | MEDLINE | ID: mdl-39095605

ABSTRACT

Mesoscale eddies influence the distribution of diazotrophic (nitrogen-fixing) cyanobacteria, impacting marine productivity and carbon export. Non-cyanobacterial diazotrophs (NCDs) are emerging as potential contributors to marine nitrogen fixation, relying on organic matter particles for resources, impacting nitrogen and carbon cycling. However, their diversity and biogeochemical importance remain poorly understood. In the subtropical North Atlantic along a single transect, this study explored the horizontal and vertical spatial variability of NCDs associated with suspended, slow-sinking, and fast-sinking particles collected with a marine snow catcher. The investigation combined amplicon sequencing with hydrographic and biogeochemical data. Cyanobacterial diazotrophs and NCDs were equally abundant, and their diversity was explained by the structure of the eddy. The unicellular symbiotic cyanobacterium UCYN-A was widespread across the eddy, whereas Trichodesmium and Crocosphaera accumulated at outer fronts. The diversity of particle-associated NCDs varied more horizontally than vertically. NCDs constituted most reads in the fast-sinking fractions, mainly comprising Alphaproteobacteria, whose abundance significantly differed from the suspended and slow-sinking fractions. Horizontally, Gammaproteobacteria and Betaproteobacteria exhibited inverse distributions, influenced by physicochemical characteristics of water intrusions at the eddy periphery. Niche differentiations across the anticyclonic eddy underscored NCD-particle associations and mesoscale dynamics, deepening our understanding of their ecological role and impact on ocean biogeochemistry.


Subject(s)
Cyanobacteria , Nitrogen Fixation , Atlantic Ocean , Cyanobacteria/genetics , Cyanobacteria/metabolism , Seawater/microbiology
17.
Nat Commun ; 15(1): 7325, 2024 Aug 25.
Article in English | MEDLINE | ID: mdl-39183190

ABSTRACT

Microeukaryotes are key contributors to marine carbon cycling. Their physiology, ecology, and interactions with the chemical environment are poorly understood in offshore ecosystems, and especially in the deep ocean. Using the Autonomous Underwater Vehicle Clio, microbial communities along a 1050 km transect in the western North Atlantic Ocean were surveyed at 10-200 m vertical depth increments to capture metabolic signatures spanning oligotrophic, continental margin, and productive coastal ecosystems. Microeukaryotes were examined using a paired metatranscriptomic and metaproteomic approach. Here we show a diverse surface assemblage consisting of stramenopiles, dinoflagellates and ciliates represented in both the transcript and protein fractions, with foraminifera, radiolaria, picozoa, and discoba proteins enriched at >200 m, and fungal proteins emerging in waters >3000 m. In the broad microeukaryote community, nitrogen stress biomarkers were found at coastal sites, with phosphorus stress biomarkers offshore. This multi-omics dataset broadens our understanding of how microeukaryotic taxa and their functional processes are structured along environmental gradients of temperature, light, and nutrients.


Subject(s)
Dinoflagellida , Ecosystem , Seawater , Atlantic Ocean , Dinoflagellida/metabolism , Dinoflagellida/genetics , Ciliophora/genetics , Ciliophora/metabolism , Transcriptome , Stramenopiles/genetics , Stramenopiles/metabolism , Carbon Cycle , Nitrogen/metabolism , Proteomics/methods
19.
Sci Total Environ ; 950: 175343, 2024 Nov 10.
Article in English | MEDLINE | ID: mdl-39127220

ABSTRACT

Despite growing concern about the large amounts of waste plastic in marine ecosystems, evidence of an increase in the amount of floating plastic at sea has been mixed. Both at-sea surveys and ingested plastic loads in seabirds show inconsistent evidence of significant increases in the amount of plastic since the 1980s. We use 3727 brown skua Catharacta antarctica regurgitations, each containing the remains of a single seabird, to monitor changes in plastic loads in four seabird taxa breeding at Inaccessible Island, Tristan da Cunha in nine years from 1987 to 2018. Frequency of occurrence in plastic ingestion and types were compared across four near-decadal time periods (1987-1989; 1999-2004; 2009-2014 and 2018) while loads were compared among years. The number and proportions of industrial pellets among ingested plastic decreased consistently over the study period in all four taxa, suggesting that industry initiatives to reduce pellet leakage have reduced the numbers of pellets at sea. Despite global plastic production increasing more than four-fold over the study period, there was no consistent increase in the total amount of ingested plastic in any species. Plastic loads in great shearwaters Ardenna gravis, which spend the austral winter in the North Atlantic Ocean, increased in 2018, but the proportion of shearwaters containing plastic decreased. We conclude that the density of plastic floating at sea has not increased in line with global production over the last 30 years.


Subject(s)
Environmental Monitoring , Plastics , Animals , Plastics/analysis , Atlantic Ocean , Water Pollutants, Chemical/analysis , Charadriiformes , Birds
20.
Mar Environ Res ; 201: 106674, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39168086

ABSTRACT

Oceans are increasingly crowded by anthropogenic activities yet the impact on Outer Continental Shelf (OCS) marine life remains largely unquantified. The MAPS (Marine Mammal Acoustic and Spatial Ecology) study of 2019 included passive acoustic and visual vessel surveys over the Mid-Atlantic OCS of the USA to address data gaps in winter/spring for deep-diving cetaceans, including sperm whales. Echolocation clicks were used to derive slant ranges to sperm whales for design- and model-based density estimates. Although more survey effort was realised in the spring, high densities of whales were identified in both winter and spring (10.46 and 8.89 per 1000 km2 respectively). The spring model-based abundance estimate of 1587 whales (CI 946-2663) was considered the most representative figure, in part due to lower coefficients of variation. Modelling suggested that high densities of whales were associated with warm core rings, eddies and edges. As OCS waters provide an important foraging habitat for North Atlantic sperm whales, appropriate mitigation is required to ensure commercial pressures to develop offshore energy do not negatively affect this endangered species.


Subject(s)
Seasons , Sperm Whale , Animals , Sperm Whale/physiology , Atlantic Ocean , Acoustics , Population Density , Echolocation/physiology , Environmental Monitoring/methods , Ecosystem
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