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1.
Int J Biol Macromol ; 277(Pt 2): 134078, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39038575

ABSTRACT

Herbicides are essential for farmers to control weed. However, prolonged use of herbicides has caused the development of herbicide resistance in weeds. Here, the resistant Echinochloa crus-galli (RL5) was obtained by continuous treatment with metamifop for five generations in paddy fields. RL5 plants showed a 13.7-fold higher resistance to metamifop compared to susceptible E. crus-galli (SL5) plants. Pre-treatment with GST inhibitor (NBD-Cl) significantly increased the susceptibility of RL5 plants to metamifop. Faster metamifop metabolism and higher GST activity in RL5 plants than in SL5 plants were also confirmed, highlighting the role of GST in metabolic resistance. RNA-Seq analysis identified EcGSTU23 as a candidate gene, and this gene was up-regulated in RL5 and field-resistant E. crus-galli plants. Furthermore, the EcGSTU23 gene was overexpressed in the transgenic EcGSTU23-Maize, and the EcGSTU23-Maize showed resistance to metamifop. In vitro metabolic studies also revealed that the purified EcGSTU23 displayed catalytic activity in glutathione (GSH) conjugation, and metamifop was rapidly metabolized in the co-incubation system containing EcGSTU23 protein. These results provide direct experimental evidence of EcGSTU23's involvement in the metabolic resistance of E. crus-galli to metamifop. Understanding the resistance mechanism can help in devising effective strategies to combat herbicide resistance and breeding of genetically modified herbicide resistant crops.


Subject(s)
Echinochloa , Glutathione Transferase , Herbicide Resistance , Echinochloa/drug effects , Echinochloa/genetics , Glutathione Transferase/genetics , Glutathione Transferase/metabolism , Herbicide Resistance/genetics , Herbicides/pharmacology , Gene Expression Regulation, Plant/drug effects , Plants, Genetically Modified , Plant Proteins/genetics , Plant Proteins/metabolism
2.
J Agric Food Chem ; 72(31): 17200-17209, 2024 Aug 07.
Article in English | MEDLINE | ID: mdl-39075938

ABSTRACT

Photosynthesis system II (PS II) is an important target for the development of bioherbicides. In this study, a series of natural naphthoquinone derivatives containing diaryl ether were designed and synthesized based on the binding model of lawsone and PS II D1. Bioassays exhibited that most compounds had more than 80% inhibition of Portulaca oleracea and Echinochloa crusgalli roots at a dose of 100 µg/mL and compounds B4, B5, and C3 exhibited superior herbicidal activities against dicotyledonous and monocotyledon weeds to commercial atrazine. In particular, compound B5 exhibited excellent herbicidal activity at a dosage of 150 g a.i./ha. In addition, compared with atrazine, compound B5 causes less damage to crops. Molecular docking studies revealed that compound B5 effectively interacted with Pisum sativum PS II D1 via diverse interaction models, such as π-π stacking and hydrogen bonds. Molecular dynamics simulation studies and chlorophyll fluorescence measurements revealed that compound B5 acted on PS II. This is the first report of natural naphthoquinone derivatives targeting PS II and compound B5 may be a candidate molecule for the development of new herbicides targeting PS II.


Subject(s)
Drug Design , Echinochloa , Herbicides , Molecular Docking Simulation , Naphthoquinones , Plant Weeds , Herbicides/chemistry , Herbicides/pharmacology , Herbicides/chemical synthesis , Naphthoquinones/chemistry , Naphthoquinones/pharmacology , Echinochloa/drug effects , Echinochloa/growth & development , Plant Weeds/drug effects , Plant Weeds/growth & development , Structure-Activity Relationship , Ethers/chemistry , Ethers/pharmacology , Photosystem II Protein Complex/chemistry , Photosystem II Protein Complex/antagonists & inhibitors , Photosystem II Protein Complex/metabolism , Molecular Structure , Plant Proteins/chemistry , Plant Roots/chemistry , Plant Roots/drug effects
3.
Pest Manag Sci ; 80(9): 4665-4674, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38884421

ABSTRACT

BACKGROUND: The presence of barnyardgrass poses a threat to global food security by reducing rice yields. Currently, herbicides are primarily applied for weed management. However, the effectiveness of herbicide deposition and uptake on barnyardgrass is limited as a consequence of the high wax content on leaves, low water solubility and extreme lipophilicity of herbicides. Therefore, it is imperative to develop novel formulations for efficient delivery of herbicides to improve herbicidal activity and reduce dosage. RESULTS: We successfully prepared nanosuspension(s) (NS) of quinclorac through the wet media milling technique. This NS demonstrates excellent physical stability and maintains nanoscale during dose transfer. The deposition concentration and uptake concentration of NS on barnyardgrass were 3.84-4.47- and 2.11-2.58-fold greater than those traditional formulations, respectively. Moreover, the NS exhibited enhanced herbicidal activity against barnyardgrass at half the dosage required by conventional formulations without compromising rice safety. CONCLUSIONS: These findings suggest that NS can effectively facilitate the delivery of hydrophobic and poorly water-soluble herbicide active ingredients, thereby enhancing their deposition, uptake and bioactivity. This study expands the potential application of NS in pesticide delivery, which can provide valuable support for optimizing pesticide utilization, improving economic efficiency and mitigating environmental risks. © 2024 Society of Chemical Industry.


Subject(s)
Herbicides , Quinolines , Herbicides/chemistry , Herbicides/pharmacology , Quinolines/chemistry , Quinolines/pharmacology , Suspensions , Nanoparticles/chemistry , Echinochloa/drug effects , Weed Control/methods
4.
J Agric Food Chem ; 72(25): 14402-14410, 2024 Jun 26.
Article in English | MEDLINE | ID: mdl-38875520

ABSTRACT

Tripyrasulfone is currently the only HPPD-inhibiting herbicide that possesses outstanding selectivity even for direct-seeded rice (Oryza sativa) when applied POST to control grass weeds; however, the underlying mechanisms remain unclear. In this study, the inhibitory effects of the real active HDT of tripyrasulfone on recombinant 4-hydroxyphenylpyruvate dioxygenase (HPPDs) from rice and barnyard grass (Echinochloa crus-galli) were similar, with consistent structural interactions and similar binding energies predicted by molecular docking. However, the HPPD expression level in rice was significantly greater than that in barnyard grass after tripyrasulfone treatment. Tripyrasulfone was rapidly taken up and hydrolyzed into HDT, which was similarly distributed within the whole plants of rice and barnyard grass at 24 h after treatment. Compared with barnyard grass, rice has more uniform epicuticular wax in the cuticle of its leaves, absorbing less tripyrasulfone and metabolizing much more tripyrasulfone. Overall, to a greater extent, the different sensitivities to tripyrasulfone between barnyard grass and rice resulted from metabolic variations.


Subject(s)
4-Hydroxyphenylpyruvate Dioxygenase , Echinochloa , Herbicides , Molecular Docking Simulation , Oryza , Plant Proteins , Oryza/metabolism , Oryza/chemistry , Echinochloa/drug effects , Echinochloa/genetics , Echinochloa/metabolism , Echinochloa/growth & development , Echinochloa/chemistry , Herbicides/pharmacology , Herbicides/chemistry , Herbicides/metabolism , Plant Proteins/metabolism , Plant Proteins/genetics , Plant Proteins/chemistry , 4-Hydroxyphenylpyruvate Dioxygenase/metabolism , 4-Hydroxyphenylpyruvate Dioxygenase/antagonists & inhibitors , 4-Hydroxyphenylpyruvate Dioxygenase/genetics , 4-Hydroxyphenylpyruvate Dioxygenase/chemistry , Plant Weeds/drug effects , Plant Weeds/metabolism , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry
5.
PLoS One ; 19(6): e0304863, 2024.
Article in English | MEDLINE | ID: mdl-38905259

ABSTRACT

Echinochloa crus-galli is a serious weed species in rice paddies. To obtain a new potential bioherbicide, we evaluated the inhibitory activities of 13 essential oils and their active substances against E. crus-galli. Essential oil from Syzygium aromaticum (L.) Merr. & L. M. Perry (SAEO) exhibited the highest herbicidal activity (EC50 = 3.87 mg mL-1) among the 13 essential oils evaluated. The SAEO was isolated at six different temperatures by vacuum fractional distillation, including 164°C, 165°C (SAEO-165), 169°C, 170°C 175°C and 180°C. The SAEO-165 had the highest inhibitory rate against E. crus-galli. Gas chromatography-mass spectrometry and high phase liquid chromatography identified eugenol (EC50 = 4.07 mg mL-1), α-caryophyllene (EC50 = 17.34 mg mL-1) and ß-caryophyllene (EC50 = 96.66 mg mL-1) as the three compounds in SAEO. Results from a safety bioassay showed that the tolerance of rice seedling (~ 20% inhibition) was higher than that of E. crus-galli (~ 70% inhibition) under SAEO stress. SAEO induced excessive generation of reactive oxygen species leading to oxidative stress and ultimately tissue damage in E. crus-galli. Our results indicate that SAEO has a potential for development into a new selective bio-herbicide. They also provide an example of a sustainable management strategy for E. crus-galli in rice paddies.


Subject(s)
Echinochloa , Herbicides , Oils, Volatile , Syzygium , Oils, Volatile/pharmacology , Oils, Volatile/chemistry , Echinochloa/drug effects , Syzygium/chemistry , Herbicides/pharmacology , Herbicides/chemistry , Gas Chromatography-Mass Spectrometry
6.
J Agric Food Chem ; 72(20): 11405-11414, 2024 May 22.
Article in English | MEDLINE | ID: mdl-38717990

ABSTRACT

This study investigated the multiple herbicide resistance (MHR) mechanism of one Echinochloa crus-galli population that was resistant to florpyrauxifen-benzyl (FPB), cyhalofop-butyl (CHB), and penoxsulam (PEX). This population carried an Ala-122-Asn mutation in the acetolactate synthase (ALS) gene but no mutation in acetyl-CoA carboxylase (ACCase) and transport inhibitor response1 (TIR1) genes. The metabolism rate of PEX was 2-fold higher, and the production of florpyrauxifen-acid and cyhalofop-acid was lower in the resistant population. Malathion and 4-chloro-7-nitrobenzoxadiazole (NBD-Cl) could reverse the resistance, suggesting that cytochrome P450 (CYP450) and glutathione S-transferase (GST) contribute to the enhanced metabolism. According to RNA-seq and qRT-PCR validation, two CYP450 genes (CYP71C42 and CYP71D55), one GST gene (GSTT2), two glycosyltransferase genes (rhamnosyltransferase 1 and IAAGLU), and two ABC transporter genes (ABCG1 and ABCG25) were induced by CHB, FPB, and PEX in the resistant population. This study revealed that the target mutant and enhanced metabolism were involved in the MHR mechanism in E. crus-galli.


Subject(s)
Cytochrome P-450 Enzyme System , Echinochloa , Herbicide Resistance , Herbicides , Mutation , Plant Proteins , Herbicide Resistance/genetics , Herbicides/pharmacology , Herbicides/metabolism , Echinochloa/genetics , Echinochloa/drug effects , Echinochloa/metabolism , Echinochloa/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Cytochrome P-450 Enzyme System/genetics , Cytochrome P-450 Enzyme System/metabolism , Acetyl-CoA Carboxylase/genetics , Acetyl-CoA Carboxylase/metabolism , Plant Weeds/drug effects , Plant Weeds/genetics , Plant Weeds/metabolism , Acetolactate Synthase/genetics , Acetolactate Synthase/metabolism , Butanes , Nitriles , Sulfonamides , Uridine/analogs & derivatives
7.
J Agric Food Chem ; 72(22): 12425-12433, 2024 Jun 05.
Article in English | MEDLINE | ID: mdl-38781442

ABSTRACT

Phytoene desaturase (PDS) is a critical functional enzyme in blocking ζ-carotene biosynthesis and is one of the bleaching herbicide targets. At present, norflurazon (NRF) is the only commercial pyridazine herbicide targeting PDS. Therefore, developing new and diverse pyridazine herbicides targeting PDS is urgently required. In this study, diflufenican (BF) was used as the lead compound, and a scaffold-hopping strategy was employed to design and synthesize some pyridazine derivatives based on the action mode of BF and PDS. The preemergence herbicidal activity tests revealed that compound 6-chloro-N-(2,4-difluorophenyl)-3-(3-(trifluoromethyl)phenoxy)pyridazine-4-carboxamide (B1) with 2,4-diF substitution in the benzeneamino ring showed 100% inhibition rates against the roots and stems of Echinochloa crus-galli and Portulaca oleracea at 100 µg/mL, superior to the inhibition rates of BF. Meanwhile, compound B1 demonstrated excellent postemergence herbicidal activity against broadleaf weeds, which was similar to that of BF (inhibition rate of 100%) but superior to that of NRF. This indicated that 6-Cl in the pyridazine ring is the key group for postemergence herbicidal activity. In addition, compound B1 could induce downregulation of PDS gene expression, 15-cis-phytoene accumulation, and Y(II) deficiency and prevent photosynthesis. Therefore, B1 can be considered as a promising candidate for developing high-efficiency PDS inhibitors.


Subject(s)
Echinochloa , Herbicides , Oxidoreductases , Plant Proteins , Plant Weeds , Pyridazines , Herbicides/pharmacology , Herbicides/chemistry , Pyridazines/pharmacology , Pyridazines/chemistry , Echinochloa/drug effects , Echinochloa/enzymology , Echinochloa/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Proteins/chemistry , Plant Proteins/antagonists & inhibitors , Oxidoreductases/genetics , Oxidoreductases/metabolism , Oxidoreductases/antagonists & inhibitors , Oxidoreductases/chemistry , Plant Weeds/drug effects , Plant Weeds/enzymology , Plant Weeds/genetics , Structure-Activity Relationship , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry , Plant Roots/chemistry , Plant Roots/drug effects , Molecular Structure
8.
Sci Rep ; 14(1): 10544, 2024 05 08.
Article in English | MEDLINE | ID: mdl-38719860

ABSTRACT

The increasing amount of weeds surviving herbicide represents a very serious problem for crop management. The interaction between microbial community of soil and herbicide resistance, along with the potential evolutive consequences, are still poorly known and need to be investigated to better understand the impact on agricultural management. In our study, we analyzed the microbial composition of soils in 32 farms, located in the Northern Italy rice-growing area (Lombardy) with the aim to evaluate the relationship between the microbial composition and the incidence of resistance to acetolactate synthase (ALS) and acetyl-CoA carboxylase (ACCase) inhibiting herbicides in Echinochloa species. We observed that the coverage of weeds survived herbicide treatment was higher than 60% in paddy fields with a low microbial biodiversity and less than 5% in those with a high microbial biodiversity. Fungal communities showed a greater reduction in richness than Bacteria. In soils with a reduced microbial diversity, a significant increase of some bacterial and fungal orders (i.e. Lactobacillales, Malasseziales and Diaporthales) was observed. Interestingly, we identified two different microbial profiles linked to the two conditions: high incidence of herbicide resistance (H-HeR) and low incidence of herbicide resistance (L-HeR). Overall, the results we obtained allow us to make hypotheses on the greater or lesser probability of herbicide resistance occurrence based on the composition of the soil microbiome and especially on the degree of biodiversity of the microbial communities.


Subject(s)
Acetolactate Synthase , Acetyl-CoA Carboxylase , Echinochloa , Herbicide Resistance , Herbicides , Soil Microbiology , Italy/epidemiology , Herbicides/pharmacology , Acetolactate Synthase/antagonists & inhibitors , Acetolactate Synthase/genetics , Echinochloa/drug effects , Acetyl-CoA Carboxylase/genetics , Acetyl-CoA Carboxylase/antagonists & inhibitors , Plant Weeds/drug effects , Microbiota/drug effects , Biodiversity , Bacteria/drug effects , Bacteria/genetics , Bacteria/isolation & purification , Bacteria/classification , Soil/chemistry , Fungi/drug effects , Fungi/isolation & purification , Fungi/genetics
9.
J Agric Food Chem ; 72(18): 10218-10226, 2024 May 08.
Article in English | MEDLINE | ID: mdl-38666644

ABSTRACT

In this work, a series of pyrrolidinone-containing 2-phenylpyridine derivatives were synthesized and evaluated as novel protoporphyrinogen IX oxidase (PPO, EC 1.3.3.4) inhibitors for herbicide development. At 150 g ai/ha, compounds 4d, 4f, and 4l can inhibit the grassy weeds of Echinochloa crus-galli (EC), Digitaria sanguinalis (DS), and Lolium perenne (LP) with a range of 60 to 90%. Remarkably, at 9.375 g ai/ha, these compounds showed 100% inhibition effects against broadleaf weeds of Amaranthus retroflexus (AR) and Abutilon theophrasti (AT), which were comparable to the performance of the commercial herbicides flumioxazin (FLU) and saflufenacil (SAF) and better than that of acifluorfen (ACI). Molecular docking analyses revealed significant hydrogen bonding and π-π stacking interactions between compounds 4d and 4l with Arg98, Asn67, and Phe392, respectively. Additionally, representative compounds were chosen for in vivo assessment of PPO inhibitory activity, with compounds 4d, 4f, and 4l demonstrating excellent inhibitory effects. Notably, compounds 4d and 4l induced the accumulation of reactive oxygen species (ROS) and a reduction in the chlorophyll (Chl) content. Consequently, compounds 4d, 4f, and 4l are promising lead candidates for the development of novel PPO herbicides.


Subject(s)
Drug Design , Enzyme Inhibitors , Herbicides , Molecular Docking Simulation , Plant Weeds , Protoporphyrinogen Oxidase , Pyrrolidinones , Protoporphyrinogen Oxidase/antagonists & inhibitors , Protoporphyrinogen Oxidase/chemistry , Protoporphyrinogen Oxidase/metabolism , Herbicides/pharmacology , Herbicides/chemistry , Herbicides/chemical synthesis , Plant Weeds/drug effects , Plant Weeds/enzymology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemical synthesis , Structure-Activity Relationship , Pyrrolidinones/chemistry , Pyrrolidinones/pharmacology , Pyrrolidinones/chemical synthesis , Plant Proteins/chemistry , Plant Proteins/antagonists & inhibitors , Pyridines/chemistry , Pyridines/pharmacology , Pyridines/chemical synthesis , Amaranthus/drug effects , Amaranthus/chemistry , Echinochloa/drug effects , Echinochloa/enzymology , Digitaria/drug effects , Digitaria/enzymology , Digitaria/chemistry , Lolium/drug effects , Lolium/enzymology , Molecular Structure
10.
J Chem Ecol ; 50(7-8): 373-384, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38637418

ABSTRACT

Scirpophaga incertulas Walker (Lepidoptera: Crambidae, yellow stem borer, YSB) is a monophagous insect pest that causes significant yield loss in rice (Oryza staiva L.). Semiochemical based pest management is being sought as an alternate to chemical pesticides to reduce pesticide footprints. We hypothesized differential release of volatiles from host rice and two companion non-host weeds, Echinochloa colona and Echinochloa crus-galli could be responsible for oviposition and biology of YSB and these chemicals could be used for YSB management. Number of eggs laid, and number of larvae hatched were significantly higher in rice plant as compared to weeds. YSB could only form dead hearts in rice plants. YSB significantly preferred host-plant volatiles compared to the non-host plants both in choice and no-choice tests in an Y-tube olfactometer. 2-Hexenal, hexanal, 2,4-hexadienal, benzaldehyde, nonanal, methyl salicylate and decanal were found in the leaf volatolomes of both the host and non-host plants in HS-SPME-GC-MS (Headspace-Solid phase micro extraction-Gas chromatography-Mass spectrometer). Pentene-3-one, 2-pentyl furan, 2,4-heptadienal, 2-octenal, 2-octenol and menthol were present only in the non-host plants. Fourteen rice unique compounds were also detected. The built-in PCA (Principal Component Analysis) and PLS-DA (Partial least squares-discriminant analysis) analysis in the MS-DIAL tool showed that the volatiles emitted from TN1 formed a cluster distinct from Echinochloa spp. and 2-octenal was identified as a unique compound. Olfactometer bioassays using synthetic compounds showed that rice unique compounds, like xylene, hexanal served as attractants whereas non-host unique compounds, like 2-pentylfuran, 2-octenal acted as repellent. The results indicate that the rice unique compounds xylene, hexanal along with other volatile compounds could be responsible for higher preference of YSB towards rice plants. Similarly, the non-host unique compounds 2-pentylfuran, 2-octenal could possibly be responsible for lower preference and defence against YSB. These compounds could be utilised for devising traps for YSB monitoring and management.


Subject(s)
Oryza , Volatile Organic Compounds , Animals , Oryza/chemistry , Oryza/metabolism , Oryza/parasitology , Volatile Organic Compounds/metabolism , Volatile Organic Compounds/chemistry , Volatile Organic Compounds/pharmacology , Volatile Organic Compounds/analysis , Gas Chromatography-Mass Spectrometry , Moths/physiology , Oviposition/drug effects , Echinochloa/chemistry , Echinochloa/drug effects , Female , Larva/physiology , Solid Phase Microextraction , Plant Leaves/chemistry , Plant Leaves/metabolism , Plant Weeds , Olfactometry
11.
Pest Manag Sci ; 80(8): 3786-3794, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38483148

ABSTRACT

BACKGROUND: Barnyardgrass (Weed Science Society of America recommended) or Barnyard grass (Britannica recommended) (Echinochloa crus-galli (L.) P. Beauv.) is one of the most problematic and dominant weeds in world agricultural systems, especially in paddy fields, where tillering and grain yield can be reduced by 50-70% because of its competitive pressure. The frequent use of chemical herbicides to control E. crus-galli has led to the evolution of herbicide resistance. Developing bioherbicides using pathogenic fungi to control E. crus-galli could be an alternative option. RESULTS: In a previous study we showed that a strain of Bipolaris yamadae (HXDC-1-2) was promising in controlling gramineous weeds. Here we present a study that evaluated this fungus as a mycoherbicide against E. crus-galli in greenhouse and paddy fields, characterized mycelium growth and conidial production, and examined the infection development. The median effective dose (ED50) and 90% effective dose (ED90) values of microcapsulated B. yamadae strain HXDC-1-2 on E. crus-galli in the greenhouse were 7.17 × 102 and 9.35 × 103 conidia mL-1, respectively. Conidial germination, mycelial growth, and attachment formation occurred on E. crus-galli leaves within 1 to 6 h. The hyphae directly invaded cells and stomata, primarily from the appressorium on the epidermis, and necrotic lesions were observed on the leaf surface within 20 to 24 h. Applied to E. crus-galli plants at 1 × 105 conidia mL-1, the fungus reduced the weed's fresh weight of 75%. CONCLUSION: B. yamadae strain HXDC-1-2 has the potential to be developed as a bioherbicide against E. crus-galli plants, especially in rice fields. © 2024 Society of Chemical Industry.


Subject(s)
Bipolaris , Echinochloa , Oryza , Plant Weeds , Weed Control , Echinochloa/drug effects , Echinochloa/growth & development , Oryza/microbiology , Weed Control/methods , Plant Weeds/drug effects , Bipolaris/drug effects , Pest Control, Biological , Herbicides/pharmacology
12.
Bioorg Chem ; 117: 105452, 2021 12.
Article in English | MEDLINE | ID: mdl-34742026

ABSTRACT

Three pairs of undescribed enantiomeric α-pyrone derivatives (1a/1b-3a/3b) and six undescribed congeners (4-9), were obtained from the fungus Alternaria brassicicola that was isolated from the fresh leaves of Siegesbeckia pubescens Makino (Compositae). The structures of these new compounds were characterized by extensive NMR spectroscopic and HRESIMS data, and their absolute configurations were further elucidated by a modified Mosher's method, chemical conversion, single-crystal X-ray diffraction analysis, and ECD calculations. This is the first report of three pairs of enantiomeric α-pyrone derivatives from the fungus A. brassicicola, and these enantiomers were successfully acquired from scalemic mixtures via chiral HPLC. Compounds 1a/1b-3a/3b and 4-9 were evaluated for the herbicidal activity against Echinochloa crusgalli, Setaria viridis, Portulaca oleracea, and Taraxacum mongolicum. At a concentration of 100 µg/mL, compounds 1a and 1b could significantly inhibit the germination of monocotyledon weed seeds (E. crusgalli and S. viridis) with inhibitory ratios ranging from 68.6 ± 6.4% to 84.2 ± 5.1%, which was equivalent to that of the positive control (glyphosate). The potential structure-herbicidal activity relationship of these compounds was also discussed. To a certain extent, the results of this study will attract great interest for the potential practical application of promising fungal metabolites, α-pyrone derivatives, as ecofriendly herbicides.


Subject(s)
Alternaria/chemistry , Herbicides/pharmacology , Pyrones/pharmacology , Asteraceae/chemistry , Dose-Response Relationship, Drug , Echinochloa/drug effects , Herbicides/chemistry , Herbicides/isolation & purification , Molecular Structure , Portulaca/drug effects , Pyrones/chemistry , Pyrones/isolation & purification , Setaria Plant/drug effects , Structure-Activity Relationship , Taraxacum/drug effects
13.
Genes (Basel) ; 12(11)2021 11 22.
Article in English | MEDLINE | ID: mdl-34828447

ABSTRACT

The sustainability of rice cropping systems is jeopardized by the large number and variety of populations of polyploid Echinochloa spp. resistant to ALS inhibitors. Better knowledge of the Echinochloa species present in Italian rice fields and the study of ALS genes involved in target-site resistance could significantly contribute to a better understanding of resistance evolution and management. Using a CAPS-rbcL molecular marker, two species, E. crus-galli (L.) P. Beauv. and E. oryzicola (Vasinger) Vasing., were identified as the most common species in rice in Italy. Mutations involved in ALS inhibitor resistance in the different species were identified and associated with the ALS homoeologs. The relative expression of the ALS gene copies was evaluated. Molecular characterization led to the identification of three ALS genes in E. crus-galli and two in E. oryzicola. The two species also carried different point mutations conferring resistance: Ala122Asn in E. crus-galli and Trp574Leu in E. oryzicola. Mutations were carried in the same gene copy (ALS1), which was significantly more expressed than the other copies (ALS2 and ALS3) in both species. These results explain the high resistance level of these populations and why mutations in the other ALS copies are not involved in herbicide resistance.


Subject(s)
Acetolactate Synthase/genetics , Echinochloa/genetics , Mutation , Plant Proteins/genetics , Acetolactate Synthase/antagonists & inhibitors , Acetolactate Synthase/chemistry , Acetolactate Synthase/metabolism , Binding Sites , Drug Resistance , Echinochloa/classification , Echinochloa/drug effects , Enzyme Inhibitors/pharmacology , Gene Dosage , Plant Proteins/metabolism , Protein Binding
14.
Sci Rep ; 11(1): 14858, 2021 07 21.
Article in English | MEDLINE | ID: mdl-34290336

ABSTRACT

Understanding the fate of heterogenous herbicide resistant weed populations in response to management practices can help towards overcoming the resistance issues. We selected one pair of susceptible (S) and resistant (R) phenotypes (2B21-R vs 2B21-S and 2B37-R vs 2B37-S) separately from two glyphosate resistant heterogeneous populations (2B21 and 2B37) of Echinochloa colona and their fate and adaptive plasticity were evaluated after glyphosate application. Our study revealed the glyphosate concentration required to cause a 50% plant mortality (LD50) was 1187, 200, 3064, and 192 g a. e. ha-1 for the four phenotypes 2B21-R, 2B21-S, 2B37-R, and 2B37-S respectively. Both S phenotypes accumulated more biomass than the R phenotypes at the lower application rates (34 and 67.5 g a. e. ha-1) of glyphosate. However, the R phenotypes generally produced more biomass at rates of glyphosate higher than 100 g a. e. ha-1 throughout the growth period. Plants from the R phenotypes of 2B21 and 2B37 generated 32% and 38% fewer spikesplant-1 than their respective S counterparts in the absence of glyphosate respectively. The spike and seed numbersplant-1 significantly higher in R than S phenotypes at increased rates of glyphosate and these relationships were significant. Our research suggests that glyphosate-resistant E. colona plants will be less fit than susceptible plants (from the same population) in the absence of glyphosate. But in the presence of glyphosate, the R plants may eventually dominate in the field. The use of glyphosate is widespread in field, would favour the selection towards resistant individuals.


Subject(s)
Adaptation, Physiological/drug effects , Echinochloa/drug effects , Echinochloa/physiology , Glycine/analogs & derivatives , Herbicide Resistance , Herbicides/pharmacology , Biomass , Echinochloa/genetics , Glycine/pharmacology , Phenotype , Seeds/drug effects , Glyphosate
15.
Molecules ; 26(7)2021 Apr 04.
Article in English | MEDLINE | ID: mdl-33916510

ABSTRACT

Amino acids have a wide range of biological activities, which usually rely on the stereoisomer presented. In this study, glycine and 21 common α-amino acids were investigated for their herbicidal property against Chinese amaranth (Amaranthus tricolor L.) and barnyard grass (Echinochloa crus-galli (L.) Beauv.). Both d- and l-isomers, as well as a racemic mixture, were tested and found that most compounds barely inhibited germination but moderately suppressed seedling growth. Various ratios of d:l-mixture were studied and synergy between enantiomers was found. For Chinese amaranth, the most toxic d:l-mixtures were at 3:7 (for glutamine), 8:2 (for methionine), and 5:5 (for tryptophan). For barnyard grass, rac-glutamine was more toxic than the pure forms; however, d-tryptophan exhibited greater activity than racemate and l-isomer, indicating the sign of enantioselective toxicity. The mode of action was unclear, but d-tryptophan caused bleaching of leaves, indicating pigment synthesis of the grass was inhibited. The results highlighted the enantioselective and synergistic toxicity of some amino acids, which relied upon plant species, chemical structures, and concentrations. Overall, our finding clarifies the effect of stereoisomers, and provides a chemical clue of amino acid herbicides, which may be useful in the development of herbicides from natural substances.


Subject(s)
Amaranthus/drug effects , Amino Acids/pharmacology , Echinochloa/drug effects , Herbicides/pharmacology , Seedlings/drug effects , Amaranthus/growth & development , Amaranthus/metabolism , Amino Acids/chemistry , Dose-Response Relationship, Drug , Echinochloa/growth & development , Echinochloa/metabolism , Germination/drug effects , Germination/physiology , Green Chemistry Technology , Herbicides/chemistry , Humans , Plant Leaves/drug effects , Plant Leaves/growth & development , Plant Leaves/metabolism , Plant Weeds/drug effects , Plant Weeds/growth & development , Plant Weeds/metabolism , Seedlings/growth & development , Seedlings/metabolism , Seeds/drug effects , Seeds/growth & development , Seeds/metabolism , Stereoisomerism , Structure-Activity Relationship
16.
Proc Natl Acad Sci U S A ; 118(16)2021 04 20.
Article in English | MEDLINE | ID: mdl-33846264

ABSTRACT

Glyphosate is the most widely used herbicide in world agriculture and for general vegetation control in a wide range of situations. Global and often intensive glyphosate selection of very large weedy plant populations has resulted in widespread glyphosate resistance evolution in populations of many weed species. Here, working with a glyphosate-resistant (GR) Echinochloa colona population that evolved in a Western Australia agricultural field, we identified an ATP-binding cassette (ABC) transporter (EcABCC8) that is consistently up-regulated in GR plants. When expressed in transgenic rice, this EcABCC8 transporter endowed glyphosate resistance. Equally, rice, maize, and soybean overexpressing the EcABCC8 ortholog genes were made resistant to glyphosate. Conversely, CRISPR/Cas9-mediated knockout of the EcABCC8 ortholog gene OsABCC8 increased rice susceptibility to glyphosate. Subcellular localization analysis and quantification of glyphosate cellular levels in treated ABCC8 transgenic rice plants and isolated leaf protoplasts as well as structural modeling support that EcABCC8 is likely a plasma membrane-localized transporter extruding cytoplasmic glyphosate to the apoplast, lowering the cellular glyphosate level. This is a report of a membrane transporter effluxing glyphosate in a GR plant species, and its function is likely conserved in crop plant species.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Glycine/analogs & derivatives , Herbicide Resistance/genetics , ATP-Binding Cassette Transporters/genetics , Cell Membrane/metabolism , Echinochloa/drug effects , Echinochloa/genetics , Echinochloa/metabolism , Glycine/metabolism , Herbicides/pharmacology , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Oryza/genetics , Plant Leaves/drug effects , Plant Weeds/genetics , Plants/metabolism , Plants, Genetically Modified/drug effects , Glycine max/genetics , Zea mays/genetics , Glyphosate
17.
ACS Appl Mater Interfaces ; 13(7): 7997-8005, 2021 Feb 24.
Article in English | MEDLINE | ID: mdl-33577306

ABSTRACT

Application of natural products as new green agrochemicals with low average lifetime, low concentration doses, and safety is both complex and expensive due to chemical modification required to obtain desirable physicochemical properties. Transport, aqueous solubility, and bioavailability are some of the properties that have been improved using functionalized metal-organic frameworks based on zinc for the encapsulation of bioherbicides (ortho-disulfides). An in situ method has been applied to achieve encapsulation, which, in turn, led to an improvement in water solubility by more than 8 times after 2-hydroxypropyl-ß-cyclodextrin HP-ß-CD surface functionalization. High-resolution high-angle annular dark-field scanning transmission electron microscopy (HR HAADF-STEM) and integrated differential phase contrast (iDPC) imaging techniques were employed to verify the success of the encapsulation procedure and crystallinity of the sample. Inhibition studies on principal weeds that infect rice, corn, and potato crops gave results that exceed those obtained with the commercial herbicide Logran. This finding, along with a short synthesis period, i.e., 2 h at 25 °C, make the product an example of a new generation of natural-product-based herbicides with direct applications in agriculture.


Subject(s)
Agrochemicals/pharmacology , Amaranthus/drug effects , Echinochloa/drug effects , Herbicides/pharmacology , Lolium/drug effects , Metal-Organic Frameworks/pharmacology , Agrochemicals/chemical synthesis , Agrochemicals/chemistry , Capsules/chemistry , Capsules/pharmacology , Disulfides/chemistry , Disulfides/pharmacology , Herbicides/chemical synthesis , Herbicides/chemistry , Metal-Organic Frameworks/chemical synthesis , Metal-Organic Frameworks/chemistry , Molecular Structure , Particle Size , Solubility , Surface Properties , Zinc/chemistry , Zinc/pharmacology
18.
J Agric Food Chem ; 69(1): 101-111, 2021 Jan 13.
Article in English | MEDLINE | ID: mdl-33395522

ABSTRACT

Greenhouse studies were planted at the R.R. Foil Plant Science Research Center in Starkville, MS. In the efficacy trial, pots were seeded with barnyardgrass (Echinochloa crus-galli), broadleaf signalgrass (Urochloa platyphylla), and giant foxtail (Setaria faberi). In the lab detection trial, only barnyardgrass was seeded. Both studies consisted of 16 treatments with four replications per treatment. The treatments consisted of clethodim, glyphosate, dicamba, and 2,4-D applied singularly and in combination with each other. Each herbicide combination was applied with three application methods: tank mixture, sequential applications where the synthetic auxin was applied first (auxin applied first), and sequential applications where glyphosate or clethodim was applied first (auxin applied second). The auxin applied second method had higher visual estimations of control ratings and lower biomass weights compared to the other two methods. The auxin applied second method had more glyphosate and clethodim detected with the use of liquid chromatography tandem mass spectrometry.


Subject(s)
2,4-Dichlorophenoxyacetic Acid/pharmacology , Crop Production/methods , Cyclohexanones/pharmacology , Dicamba/pharmacology , Echinochloa/drug effects , Glycine/analogs & derivatives , Herbicides/pharmacology , Drug Synergism , Echinochloa/growth & development , Glycine/pharmacology , Indoleacetic Acids/pharmacology , Plant Weeds/drug effects , Plant Weeds/growth & development , Glyphosate
19.
J Agric Food Chem ; 68(51): 15107-15114, 2020 Dec 23.
Article in English | MEDLINE | ID: mdl-33301336

ABSTRACT

Based on the structures of isoxaflutole (IFT) and N-isobutyl-N-(4-chloro-benzyl)-4-chloro-2-pentenamide, a series of N-benzyl-5-cyclopropyl-isoxazole-4-carboxamides was designed by connecting their pharmacophores (i.e., a multitarget drug design strategy). A total of 27 N-benzyl-5-cyclopropyl-isoxazole-4-carboxamides were prepared from 5-cyclopropylisoxazole-4-carboxylic acid and substituted benzylamines, and their structures were confirmed by NMR and MS. Laboratory bioassays indicated that I-26 showed 100% inhibition against Portulaca oleracea and Abutilon theophrasti at a concentration of 10 mg/L, better than the positive control butachlor (50% inhibition for both weeds). A strong growth inhibition was observed, but a typical bleaching phenomenon of IFT could not be observed in the Petri dish assay. I-05 displayed excellent postemergence herbicidal activity against Echinochloa crusgalli and A. theophrasti at a rate of 150 g/ha, and bleaching symptoms were observed in the leaves of treated weeds. The bleaching effect of Chlamydomonas reinhardtii treated by I-05 could be reversed by adding homogentisate. Enzymatic bioassays indicated that I-05 could not inhibit 4-hydroxyphenylpyruvate dioxygenase (HPPD) activity, but II-05, an isoxazole ring-opening product of I-05, could inhibit HPPD activity with an EC50 value of 1.05 µM, similar to that of mesotrione (with an EC50 value of 1.35 µM). Detailed discussion about observed herbicidal symptoms is provided in the Results and Discussion section. This investigation provided a proof-of-concept foundation that a multitarget drug design strategy could be applied in agrochemical research.


Subject(s)
Herbicides/chemical synthesis , Herbicides/pharmacology , Isoxazoles/chemistry , Isoxazoles/pharmacology , Drug Design , Echinochloa/drug effects , Echinochloa/growth & development , Herbicides/chemistry , Molecular Structure , Plant Weeds/drug effects , Plant Weeds/growth & development , Structure-Activity Relationship
20.
J Agric Food Chem ; 68(42): 11829-11838, 2020 Oct 21.
Article in English | MEDLINE | ID: mdl-32975941

ABSTRACT

In this study, we will report on the synthesis and application of efficient botanical agrochemicals from turpentine for sustainable crop protection. Two series of turpentine derived secondary amines were synthesized and identified by FT-IR, 1H NMR, 13C NMR, and HRMS. The herbicidal activities against Echinochloa crus-galli were evaluated. The potential toxicity of the synthesized compounds was tested by MTT cytotoxicity analysis. The effect of structure of the synthesized secondary amines and corresponding Schiff base compounds on their activities was investigated by quantitative structure-activity relationship (QSAR) study. All target products were found to be low toxicity, with similar or higher herbicidal activities than commercial herbicides diuron and Glyphosate. Results of QSAR study showed that a best four-descriptor QSAR model with R2 of 0.880 and Rloo2 of 0.818 was obtained. The four descriptors most relevant to the herbicidal activities are the min valency of a N atom, the max total interaction for a C-H bond, the relative number of aromatic bonds, and the min partial charge (Qmin).


Subject(s)
Amines/pharmacology , Herbicides/chemical synthesis , Herbicides/pharmacology , Turpentine/chemistry , Amines/chemistry , Crop Protection , Echinochloa/drug effects , Echinochloa/growth & development , Glycine/analogs & derivatives , Glycine/pharmacology , Herbicides/chemistry , Molecular Structure , Quantitative Structure-Activity Relationship , Turpentine/pharmacology , Glyphosate
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