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1.
Clin Chim Acta ; 564: 119906, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39127296

ABSTRACT

Mycoplasma pneumoniae can cause respiratory infections and pneumonia, posing a serious threat to the health of children and adolescents. Early diagnosis of Mycoplasma pneumoniae infection is crucial for clinical treatment. Currently, diagnostic methods for Mycoplasma pneumoniae infection include pathogen detection, molecular biology techniques, and bacterial culture, all of which have certain limitations. Here, we developed a rapid, simple, and accurate detection method for Mycoplasma pneumoniae that does not rely on large equipment or complex operations. This technology combines the CRISPR-Cas12a system with recombinase polymerase amplification (RPA), allowing the detection results to be observed through fluorescence curves and immunochromatographic lateral flow strips.It has been validated that RPA-CRISPR/Cas12a fluorescence analysis and RPA-CRISPR/Cas12-immunochromatographic exhibit no cross-reactivity with other common pathogens, and The established detection limit was ascertained to be as low as 102 copies/µL.Additionally, 49 clinical samples were tested and compared with fluorescence quantitative polymerase chain reaction, demonstrating a sensitivity and specificity of 100%. This platform exhibits promising clinical performance and holds significant potential for clinical application, particularly in settings with limited resources, such as clinical care points or resource-constrained areas.


Subject(s)
CRISPR-Cas Systems , Mycoplasma pneumoniae , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Humans , CRISPR-Cas Systems/genetics , Nucleic Acid Amplification Techniques/methods , Pneumonia, Mycoplasma/diagnosis , Pneumonia, Mycoplasma/microbiology
2.
Immun Inflamm Dis ; 12(9): e70021, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39291404

ABSTRACT

BACKGROUND: Mycoplasma pneumoniae (MP) is a common respiratory pathogen affecting the longevity of the elderly and the health of children. However, the human vaccine against MP has not been successfully developed till now due to the poor immunogenicity and side effects of MP inactivated or attenuated vaccine. Therefore, it is necessary to develop a MP genetic engineering vaccine with influenza virus strain as vector. METHODS: In this study, the major antigen genes P1a of MP adhesion factor P1(3862-4554 bases) and P30a of P30(49-822 bases) were inserted into the nonstructural protein (NS) gene of Influenza A virus strain A/Puerto Rio/8/34(H1N1), PR8 for short, to construct the recombinant vectors NS-P1a or NS-P30a. The recombinant pHW2000 plasmids containing NS-P1a or NS-P30a were cotransfected with the rest 7 fragments of PR8 into HEK293T cells. After inoculating chicken embryos, the recombinant influenza viruses rFLU-P1a and rFLU-P30a were rescued. RT-PCR and sequencing were used to identify the recombinant viruses. The hemagglutination titers of rFLU-P1a and rFLU-P30a were determined after five successive generations in chicken embryos so as to indicate the genetic stability of the recombinant viruses. The morphology of recombinant influenza viruses was observed under electron microscopy. RESULTS: P1a or P30a was designed to be inserted into the modified NS gene sequence separately and synthesized successfully. RT-PCR identification of the recombinant viruses rFLU-P1a and rFLU-P30a showed that P1a (693 bp), P30a (774 bp), NS-P1a (1992bp) and NS-P30a (2073 bp) bands were found, and the sequencing results were correct. After five successive generations, each virus generation has a certain hemagglutination titer (from 1:32 to 1:64), and the band of P1a or P30a can be seen in the corresponding positions. The virus particles under the electron microscope appeared as spheres or long strips connected by several particles, revealing a complete viral membrane structure composed of virus lipid bilayer, hemagglutinin, neuraminidase, and matrix proteins. CONCLUSION: The recombinant viruses rFLU-P1a and rFLU-P30a which carried the advantaged immune regions of the P1 and P30 genes in MP were successfully constructed and identified. And the genetic stability of rFLU-P1a or rFLU-P30a was relatively high. The typical and complete morphology of influenza virus was observed under the electron microscope. Our research provided a foundation for the further development of MP vaccines for human.


Subject(s)
Genetic Vectors , Mycoplasma pneumoniae , Humans , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/immunology , Animals , HEK293 Cells , Genetic Vectors/genetics , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/immunology , Adhesins, Bacterial/genetics , Adhesins, Bacterial/immunology , Viral Nonstructural Proteins/genetics , Viral Nonstructural Proteins/immunology , Influenza A virus/genetics , Influenza A virus/immunology , Chick Embryo , Pneumonia, Mycoplasma/immunology , Vaccines, Synthetic/immunology , Vaccines, Synthetic/genetics
3.
Microbiol Spectr ; 12(10): e0065124, 2024 Oct 03.
Article in English | MEDLINE | ID: mdl-39225474

ABSTRACT

The number of pediatric respiratory tract infection cases in China has significantly increased this year, and Mycoplasma pneumoniae is one of the main pathogens. This study aimed to investigate the epidemiological characteristics of M. pneumoniae in children in the Anhui region and to provide evidence for the prevention and control strategies of M. pneumoniae in children in this region. A total of 66,488 pediatric patients with respiratory tract infection were enrolled from January 2015 to November 2023 in this study. The results of this study exhibited that M. pneumoniae infection in the Anhui region was characterized by a high positive rate during 2021-2023, especially this year is considered a year of pandemic for M. pneumoniae infection. Moreover, the positive rate of M. pneumoniae in female children is significantly higher than in male children, and the infection rate of M. pneumoniae in children increases significantly with age, particularly in school-aged children. IMPORTANCE: The number of pediatric respiratory tract infection cases in China has significantly increased this year, and Mycoplasma pneumoniae is one of the main pathogens. This study aimed to investigate the epidemiological characteristics of M. pneumoniae in children in the Anhui region and provide evidence for the prevention and control strategies of M. pneumoniae in children in this region.


Subject(s)
Mycoplasma pneumoniae , Pneumonia, Mycoplasma , Respiratory Tract Infections , Humans , China/epidemiology , Child , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Male , Female , Pneumonia, Mycoplasma/epidemiology , Pneumonia, Mycoplasma/microbiology , Child, Preschool , Adolescent , Infant , Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/microbiology , Infant, Newborn , Epidemics/statistics & numerical data
4.
Analyst ; 149(20): 5091-5100, 2024 Oct 07.
Article in English | MEDLINE | ID: mdl-39229701

ABSTRACT

Respiratory pathogen infections are seasonally prevalent and are likely to cause co-infections or serial infections during peak periods of infection. Since they often cause similar symptoms, simultaneous and on-site detection of respiratory pathogens is essential for accurate diagnosis and efficient treatment of these infectious diseases. However, molecular diagnostic techniques for multiple pathogens in this field are lacking. Herein, we developed a microfluidic LAMP and real-time fluorescence assay for rapid detection of multiple respiratory pathogens using a ten-channel microfluidic chip with pathogen primers pre-embedded in the chip reaction well. The microfluidic chip provided a closed reaction environment, effectively preventing aerosol contamination and improving the accuracy of the detection results. Its corresponding detection instrument could automatically collect and display the fluorescence curve in real time, which was more conducive to the interpretation of results. The results showed that the developed method could specifically recognize the nucleic acid of influenza A(H1N1), Mycoplasma pneumoniae, respiratory syncytial virus type A, and SARS-CoV-2 with low detection limits of 104 copies per mL or 103 copies per mL. The test results on clinical samples demonstrated that the developed method has high sensitivity (92.00%) and high specificity (100.00%) and even has the capability to differentiate mixed-infection samples. With simple operation and high detection efficiency, the present portable and simultaneous detection assay could significantly improve the efficiency of on-site detection of respiratory infectious diseases and promote the accurate treatment, efficient prevention and control of the diseases.


Subject(s)
Influenza A Virus, H1N1 Subtype , Lab-On-A-Chip Devices , Limit of Detection , Molecular Diagnostic Techniques , Nucleic Acid Amplification Techniques , SARS-CoV-2 , Humans , Nucleic Acid Amplification Techniques/methods , SARS-CoV-2/isolation & purification , SARS-CoV-2/genetics , Molecular Diagnostic Techniques/methods , Molecular Diagnostic Techniques/instrumentation , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza A Virus, H1N1 Subtype/genetics , Mycoplasma pneumoniae/isolation & purification , Mycoplasma pneumoniae/genetics , Fluorescence , Microfluidic Analytical Techniques/instrumentation , Microfluidic Analytical Techniques/methods , Respiratory Tract Infections/diagnosis , Respiratory Tract Infections/microbiology , Respiratory Tract Infections/virology , COVID-19/diagnosis , COVID-19/virology , Respiratory Syncytial Virus, Human/isolation & purification , Respiratory Syncytial Virus, Human/genetics , Pneumonia, Mycoplasma/diagnosis , Pneumonia, Mycoplasma/microbiology , RNA, Viral/analysis , RNA, Viral/genetics
5.
BMC Infect Dis ; 24(1): 972, 2024 Sep 13.
Article in English | MEDLINE | ID: mdl-39271984

ABSTRACT

BACKGROUND: X-linked agammaglobulinemia (XLA), also referred to as Bruton's tyrosine kinase deficiency, is a rare genetic disorder that affects the immune system. We conducted genetic analysis on patients suffering from immunodeficiency by utilizing Next-Generation Sequencing techniques, as well as their closest relatives, to facilitate accurate diagnosis, offer genetic counseling services, and enhance our comprehension of XLA.


Subject(s)
Agammaglobulinemia , Genetic Diseases, X-Linked , Pneumonia, Mycoplasma , Humans , Agammaglobulinemia/complications , Agammaglobulinemia/genetics , Genetic Diseases, X-Linked/genetics , Genetic Diseases, X-Linked/complications , Male , Pneumonia, Mycoplasma/complications , Pneumonia, Mycoplasma/microbiology , Agammaglobulinaemia Tyrosine Kinase/genetics , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Adult , High-Throughput Nucleotide Sequencing
6.
J Cardiothorac Surg ; 19(1): 507, 2024 Sep 02.
Article in English | MEDLINE | ID: mdl-39223566

ABSTRACT

BACKGROUND: Mycoplasma pneumoniae pneumonia (MPP) is responsible for 20 to 40% of all cases of pneumonia acquired by children and shows an increasing incidence year by year. The aim of this study was to investigate the expression of miR-34a in children with MPP and its diagnostic value, and further explore the relationship between miR-34a and the rehabilitation effect of children with MPP. METHODS: The expression level of miR-34a was detected by RT-qPCR, and the clinical value of miR-34a was analyzed by ROC analysis. In addition, the levels of IL-6, IL-18 and TNF-α in serum of children with MPP were detected by ELISA kit, and the correlation with miR-34a was analyzed. RESULTS: Elevated levels of miR-34a were observed in the serum of children with MPP, and significantly higher expression levels were observed in children with severe symptoms and poor rehabilitation. The study suggested that miR-34a has potential as a diagnostic marker for MPP in children, helping to distinguish between mild and severe cases and predicting rehabilitation from MPP in children. In addition, miR-34a expression was positively correlated with IL-6, IL-8, and TNF-α levels. CONCLUSIONS: miR-34a is closely related to MPP in children and miR-34a may be used as a clinical biomarker for MPP in children.


Subject(s)
MicroRNAs , Pneumonia, Mycoplasma , Humans , Pneumonia, Mycoplasma/diagnosis , Pneumonia, Mycoplasma/blood , Male , Female , MicroRNAs/blood , Child , Child, Preschool , Biomarkers/blood , Mycoplasma pneumoniae/genetics
7.
Front Cell Infect Microbiol ; 14: 1409078, 2024.
Article in English | MEDLINE | ID: mdl-39176261

ABSTRACT

Introduction: Mycoplasma pneumoniae (MP) is the major cause of respiratory infections that threaten the health of children and adolescents worldwide. Therefore, an early, simple, and accurate detection approach for MP is critical to prevent outbreaks of MP-induced community-acquired pneumonia. Methods: Here, we explored a simple and accurate method for MP identification that combines loop-mediated isothermal amplification (LAMP) with the CRISPR/Cas12b assay in a one-pot reaction. Results: In the current study, the whole reaction was completed within 1 h at a constant temperature of 57°C. The limit of detection of this assay was 33.7 copies per reaction. The specificity of the LAMP-CRISPR/Cas12b method was 100%, without any cross-reactivity with other pathogens. Overall, 272 clinical samples were used to evaluate the clinical performance of LAMP-CRISPR/Cas12b. Compared with the gold standard results from real-time PCR, the present method provided a sensitivity of 88.11% (126/143), specificity of 100% (129/129), and consistency of 93.75% (255/272). Discussion: Taken together, our preliminary results illustrate that the LAMP-CRISPR/Cas12b method is a simple and reliable tool for MP diagnosis that can be performed in resource-limited regions.


Subject(s)
CRISPR-Cas Systems , Molecular Diagnostic Techniques , Mycoplasma pneumoniae , Nucleic Acid Amplification Techniques , Pneumonia, Mycoplasma , Sensitivity and Specificity , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Nucleic Acid Amplification Techniques/methods , Humans , Pneumonia, Mycoplasma/diagnosis , Pneumonia, Mycoplasma/microbiology , Molecular Diagnostic Techniques/methods , Child , Limit of Detection
8.
Int J Infect Dis ; 147: 107200, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39117175

ABSTRACT

OBJECTIVES: Mycoplasma pneumoniae (M. pneumoniae) continues to pose a significant disease burden on global public health as a respiratory pathogen. The antimicrobial resistance among M. pneumoniae strains has complicated the outbreak control efforts, emphasizing the need for robust surveillance systems and effective antimicrobial stewardship programs. DESIGN: This review comprehensively investigates studies stemming from previous outbreaks to emphasize the multifaceted nature of M. pneumoniae infections, encompassing epidemiological dynamics, diagnostic innovations, antibiotic resistance, and therapeutic challenges. RESULTS: We explored the spectrum of clinical manifestations associated with M. pneumoniae infections, emphasizing the continuum of disease severity and the challenges in gradating it accurately. Artificial intelligence and machine learning have emerged as promising tools in M. pneumoniae diagnostics, offering enhanced accuracy and efficiency in identifying infections. However, their integration into clinical practice presents hurdles that need to be addressed. Further, we elucidate the pivotal role of pharmacological interventions in controlling and treating M. pneumoniae infections as the efficacy of existing therapies is jeopardized by evolving resistance mechanisms. CONCLUSION: Lessons learned from previous outbreaks underscore the importance of adaptive treatment strategies and proactive management approaches. Addressing these complexities demands a holistic approach integrating advanced technologies, genomic surveillance, and adaptive clinical strategies to effectively combat this pathogen.


Subject(s)
Anti-Bacterial Agents , Disease Outbreaks , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , Humans , Mycoplasma pneumoniae/drug effects , Mycoplasma pneumoniae/genetics , Pneumonia, Mycoplasma/epidemiology , Pneumonia, Mycoplasma/drug therapy , Pneumonia, Mycoplasma/microbiology , Pneumonia, Mycoplasma/diagnosis , Anti-Bacterial Agents/therapeutic use , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial , Artificial Intelligence , Antimicrobial Stewardship
9.
Influenza Other Respir Viruses ; 18(8): e13361, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39145530

ABSTRACT

OBJECTIVE: This study aimed to investigate the pathogen epidemiology of community-acquired pneumonia (CAP) among children in Southwest China before, during and after the COVID-19 non-pharmaceutical interventions (NPIs). METHODS: Pathogen data of hospitalised children with CAP, including multiple direct immunofluorescence test for seven viruses, bacterial culture and polymerase chain reaction (PCR) for Mycoplasma pneumoniae, were analysed across three phases: Phase I (pre-NPIs: 1 January 2019 to 31 December 2019), Phase II (NPI period: 1 January 2020 to 31 December 2020) and Phase III (post-NPIs: 1 January 2023 to 31 December 2023). RESULTS: A total of 7533 cases were enrolled, including 2444, 1642 and 3447 individuals in Phases I, II and III, respectively. M. pneumoniae predominated in Phases I and III (23.4% and 35.5%, respectively). In Phase II, respiratory syncytial virus (RSV) emerged as the primary pathogen (20.3%), whereas detection rates of influenza A virus (Flu A) and M. pneumoniae were at a low level (1.8% and 9.6%, respectively). In Phase III, both Flu A (15.8%) and M. pneumoniae epidemic rebounded, whereas RSV detection rate returned to Phase I level, and detection rates of Streptococcus pneumoniae and Haemophilus influenzae decreased significantly compared to those in Phase I. Detection rates of adenovirus and parainfluenza virus type 3 decreased phase by phase. Age-stratified analysis and monthly variations supported the above findings. Seasonal patterns of multiple pathogens were disrupted during Phases II and III. CONCLUSIONS: COVID-19 NPIs exhibited a distinct impact on CAP pathogen epidemic among children, with post-NPIs increases observed in M. pneumoniae and Flu A prevalence. Continuous pathogen monitoring is crucial for effective prevention and control of paediatric CAP.


Subject(s)
COVID-19 , Community-Acquired Infections , Humans , Community-Acquired Infections/epidemiology , Community-Acquired Infections/microbiology , Community-Acquired Infections/virology , China/epidemiology , COVID-19/epidemiology , Cross-Sectional Studies , Child, Preschool , Female , Male , Child , Infant , SARS-CoV-2/isolation & purification , SARS-CoV-2/genetics , Mycoplasma pneumoniae/isolation & purification , Mycoplasma pneumoniae/genetics , Adolescent , Pneumonia/epidemiology , Pneumonia/microbiology , Pneumonia/virology
10.
Front Cell Infect Microbiol ; 14: 1423155, 2024.
Article in English | MEDLINE | ID: mdl-39176262

ABSTRACT

Mycoplasma pneumoniae is a significant pathogen responsible for community-acquired pneumonia, predominantly affecting children and adolescents. Here, we devised a rapid method for M. pneumoniae that combined multiple cross displacement amplification (MCDA) with real-time fluorescence technology. A set of ten primers, which were specifically designed for M. pneumoniae detection, were employed in a real-time fluorescence MCDA reaction. Of these, one primer incorporated a restriction endonuclease recognition sequence, a fluorophore, and a quencher, facilitating real-time fluorescence detection. The real-time (RT)-MCDA reactions were monitored in a simple real-time fluorescence instrument and conducted under optimised conditions (64°C for 40 min). The detection limit of the M. pneumoniae RT-MCDA assay for genomic DNA extracted from M. pneumoniae culture was down to 43 fg/µl. This assay accurately identified M. pneumoniae strains without cross-reacting with other bacteria. To validate its practical application, we tested the M. pneumoniae RT-MCDA assay using genomic DNA extracted from clinical samples. The assay's detection capability proved comparable with real-time PCR, MCDA-based biosensor detection, and visual inspection under blue light. The entire process, including rapid DNA extraction and real-time MCDA detection, was completed within 1 h. Overall, the M. pneumoniae RT-MCDA assay reported here is a simple and effective diagnostic tool for rapid M. pneumoniae detection, which holds significant potential for point-of-care testing and in resource-limited regions.


Subject(s)
DNA, Bacterial , Mycoplasma pneumoniae , Nucleic Acid Amplification Techniques , Pneumonia, Mycoplasma , Sensitivity and Specificity , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Humans , Pneumonia, Mycoplasma/diagnosis , Pneumonia, Mycoplasma/microbiology , Nucleic Acid Amplification Techniques/methods , DNA, Bacterial/genetics , Fluorescence , Molecular Diagnostic Techniques/methods , DNA Primers/genetics , Real-Time Polymerase Chain Reaction/methods , Limit of Detection
11.
Virol J ; 21(1): 183, 2024 Aug 11.
Article in English | MEDLINE | ID: mdl-39129001

ABSTRACT

BACKGROUNDS: Mycoplasma pneumoniae (M. pneumoniae) is a common pathogen causing respiratory diseases in children. This study aimed to characterize epidemiological and disease severity shifts of M. pneumoniae: infections in Guangzhou, China during and after the coronavirus disease 2019 (COVID-19) pandemic. METHODS: Throat swab samples were obtained from 5405 hospitalized patients with symptoms of acute respiratory infections to detect M. pneumoniae. Differences in epidemiological and clinical characteristics of M. pneumoniae: infections were investigated during 2020-2022 and after COVID-19 pandemic (2023). RESULTS: M. pneumoniae were detected in 849 (15.6%, 849/5405) patients. The highest annual positive rate was 29.4% (754/2570) in 2023, followed by 5.3% (72/1367) in 2022, 1.2% (12/1015) in 2021, and 2.0% (11/553) in 2020, with significantly increasing annual prevalence from 2020 to 2023. M. pneumoniae incidence peaked between July and December post-COVID-19 pandemic in 2023, with the highest monthly positive rate (56.4%, 165/293). Clinical characteristics and outcomes of patients with M. pneumoniae did not vary between periods during and after COVID-19 pandemic except that patients with M. pneumoniae post-COVID-19 pandemic were more likely to develop fever. Patients with severe M. pneumoniae pneumonia (SMPP) were more likely to develop respiratory complications, myocardial damage, and gastrointestinal dysfunction than those with non-SMPP. Patients with SMPP had lower lymphocytes, CD3+ T cells, CD4+ T cells, CD8+ T cells, B cells, and higher IL-4, IL-6, IL-10 levels than those with non-SMPP. Bronchoalveolar lavage fluid specimens from infected patients were obtained to identify macrolide resistance mutations. Macrolide-resistant M. pneumoniae (MRMP) proportion in 2023 was 91.1% (215/236). CONCLUSION: Outbreaks of M. pneumoniae: occurred in Guangzhou, China in 2023 upon Non-pharmaceutical interventions easing. Despite the increasing incidence of M. pneumoniae, the disease severity remained similar during and after the COVID-19 pandemic.


Subject(s)
COVID-19 , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , Humans , China/epidemiology , Pneumonia, Mycoplasma/epidemiology , Pneumonia, Mycoplasma/microbiology , COVID-19/epidemiology , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Male , Female , Child , Adult , Adolescent , Middle Aged , Child, Preschool , Young Adult , Disease Outbreaks , SARS-CoV-2/genetics , Infant , Aged , Incidence , Prevalence , Pandemics
12.
BMJ Open Respir Res ; 11(1)2024 Aug 03.
Article in English | MEDLINE | ID: mdl-39097412

ABSTRACT

BACKGROUND: Pneumonia due to typical bacterial, atypical bacterial and viral pathogens can be difficult to clinically differentiate. Host response-based diagnostics are emerging as a complementary diagnostic strategy to pathogen detection. METHODS: We used murine models of typical bacterial, atypical bacterial and viral pneumonia to develop diagnostic signatures and understand the host's response to these types of infections. Mice were intranasally inoculated with Streptococcus pneumoniae, Mycoplasma pneumoniae, influenza or saline as a control. Peripheral blood gene expression analysis was performed at multiple time points. Differentially expressed genes were used to perform gene set enrichment analysis and generate diagnostic signatures. These murine-derived signatures were externally validated in silico using human gene expression data. The response to S. pneumoniae was the most rapid and robust. RESULTS: Mice infected with M. pneumoniae had a delayed response more similar to influenza-infected animals. Diagnostic signatures for the three types of infection had 0.94-1.00 area under the receiver operator curve (auROC). Validation in five human gene expression datasets revealed auROC of 0.82-0.96. DISCUSSION: This study identified discrete host responses to typical bacterial, atypical bacterial and viral aetiologies of pneumonia in mice. These signatures validated well in humans, highlighting the conserved nature of the host response to these pathogen classes.


Subject(s)
Disease Models, Animal , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , Streptococcus pneumoniae , Animals , Humans , Mice , Streptococcus pneumoniae/genetics , Streptococcus pneumoniae/isolation & purification , Pneumonia, Mycoplasma/diagnosis , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/isolation & purification , Female , Pneumonia, Pneumococcal/microbiology , Orthomyxoviridae Infections/immunology , ROC Curve , Gene Expression Profiling , Pneumonia, Viral/diagnosis , Pneumonia, Viral/immunology , Mice, Inbred C57BL , Pneumonia, Bacterial/microbiology , Pneumonia, Bacterial/diagnosis , Host-Pathogen Interactions
13.
J Appl Microbiol ; 135(7)2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38982332

ABSTRACT

AIMS: A severe lockdown occurred in Wuhan during the COVID-19 pandemic, followed by a remission phase in the pandemic's aftermath. This study analyzed the bacterial and fungal profiles of respiratory pathogens in patients hospitalized with non-COVID-19 lower respiratory tract infections (LRTIs) during this period to determine the pathogen profile distributions in different age groups and hospital departments in Wuhan. METHODS AND RESULTS: We collected reports of pathogen testing in the medical records of patients hospitalized with non-COVID-19 LRTI between 2019 and 2021. These cases were tested for bacterial and fungal pathogens using 16S and internal transcribed spacer sequencing methods on bronchoalveolar lavage fluid samples. The study included 1368 cases. The bacteria most commonly identified were Streptococcus pneumoniae (12.50%) and Mycoplasma pneumoniae (8.33%). The most commonly identified fungi were Aspergillus fumigatus (2.49%) and Pneumocystis jirovecii (1.75%). Compared to 2019, the S. pneumoniae detection rates increased significantly in 2021, and those of M. pneumoniae decreased. Streptococcus pneumoniae was detected mainly in children. The detection rates of almost all fungi were greater in the respiratory Intensive Care Unit compared to respiratory medicine. Streptococcus pneumoniae and M. pneumoniae were detected more frequently in the pediatric department. CONCLUSIONS: Before and after the COVID-19 outbreak, a change in the common pathogen spectrum was detected in patients with non-COVID-19 in Wuhan, with the greatest change occurring among children. The major pathogens varied by the patient's age and the hospital department.


Subject(s)
COVID-19 , Hospitalization , Respiratory Tract Infections , Humans , China/epidemiology , Respiratory Tract Infections/microbiology , Respiratory Tract Infections/virology , Respiratory Tract Infections/epidemiology , Middle Aged , Child , Male , Adult , Female , Child, Preschool , Adolescent , Aged , Infant , COVID-19/epidemiology , Fungi/isolation & purification , Fungi/genetics , Fungi/classification , Young Adult , Streptococcus pneumoniae/isolation & purification , Streptococcus pneumoniae/genetics , Bacteria/isolation & purification , Bacteria/classification , Bacteria/genetics , SARS-CoV-2/genetics , SARS-CoV-2/isolation & purification , Mycoplasma pneumoniae/isolation & purification , Mycoplasma pneumoniae/genetics , Bronchoalveolar Lavage Fluid/microbiology , Bronchoalveolar Lavage Fluid/virology
14.
Zhonghua Yu Fang Yi Xue Za Zhi ; 58(7): 1035-1040, 2024 Jul 06.
Article in Chinese | MEDLINE | ID: mdl-39034788

ABSTRACT

To analyze the infection and drug-resistant gene 23S rRNA mutations of mycoplasma pneumoniae (Mp) in hospitalized children aged 0-17 in Ningbo City from 2019 to 2023. Throat swabs were collected from hospitalized children with respiratory tract infections in Ningbo University Affiliated Women and Children's Hospital from 2019 to 2023. They were subjected to real-time fluorescence quantitative polymerase chain reaction detection to analyze Mp infection and drug-resistant gene (23S rRNA) mutations. Intergroup comparisons were made by the Chi-square test or Fisher's exact probability method. A total of 18 968 hospitalized children were included, with a total positive rate of 30.37% (5 760/18 968). The total positive rate of drug-resistant gene mutations was 82.45% (4 749/5 760). The positive rate of Mp in male children was 29.26%, which was lower than that in female children (31.67%, χ2=12.948, P<0.001). The positive rate of Mp drug-resistant gene mutations in male children was 82.52%, which was higher than that in female children(82.37%, χ2=0.021, P=0.885). The positive rates of Mp increased with age (χ2=1 722.21, P<0.001). The positive rates of Mp drug-resistant gene mutations also increased with age (χ2=13.152, P<0.001). In the four seasons, the total positive rate of Mp in summer and autumn was significantly higher than that in winter and spring (χ2=1 085.149, P<0.001). Among them, the Mp positive rates in the summer and autumn of 2019 were as high as 38.26% and 34.49%, while in the summer and autumn of 2020, the Mp positive rates were 2.55% and 1.65%, respectively, which were the lowest in previous years. In the summer and autumn of 2023, the Mp positive rates increased to 47.22% and 51.06%. There was no statistically significant difference in the detection rate of Mp drug-resistant gene mutations among the four seasons. In Conclusion, Mp infection was more prevalent in the summer and autumn in Ningbo city and females and children aged 7-17 were more susceptible. The epidemic of Mp infection in Ningbo occurred in the summer of 2019. After the COVID-19 pandemic in 2020, the positive rate of Mp rapidly decreased and later remained in a low incidence state. After the lifting of restrictive prevention and control measures in 2023, the Mp positive rate returned to an epidemic state. The positive rate of Mp drug-resistant gene (23S rRNA) mutations was relatively high.


Subject(s)
Drug Resistance, Bacterial , Mutation , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , Humans , Child , Infant , Child, Preschool , Female , Male , Mycoplasma pneumoniae/genetics , Adolescent , Pneumonia, Mycoplasma/epidemiology , Pneumonia, Mycoplasma/microbiology , Drug Resistance, Bacterial/genetics , RNA, Ribosomal, 23S/genetics , Respiratory Tract Infections/microbiology , Respiratory Tract Infections/epidemiology , Infant, Newborn , China/epidemiology , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use
18.
Eur J Clin Microbiol Infect Dis ; 43(9): 1825-1835, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39017999

ABSTRACT

PURPOSE: To investigate macrolide-resistant Mycobacterium pneumoniae (MRMP) pneumonia in children and construct a logistic regression model for mutations in the Mycoplasma pneumoniae drug-resistant gene. METHODS: Clinical data of 281 children were analyzed. Sequencing confirmed a mutation at the A2063G locus of the 23 S rRNA gene in 227 children (A2063G group); 54 children showed no mutations (non-MRMP [NMRMP] group). We compared clinical features, laboratory tests, imaging, and bronchoscopy results and constructed a multifactorial logistic regression model to analyze risk and protective factors. RESULTS: The A2063G group had longer durations of fever and hospitalization before admission, a higher proportion of treatment with sodium methylprednisolone succinate (MPS)/dexamethasone, longer time to discontinue hormones, and higher probability of combined infections. Monocyte percentage was significantly higher in the A2063G group. Imaging suggested a higher incidence of infections in the right lung compared to both lungs. Univariate analysis revealed fever duration before admission, hormone dose and duration, monocyte percentage, and mixed infections as risk factors for Mycoplasma pneumoniae infection with the A2063G mutation. The logistic regression model showed that mixed infections were an independent risk factor for the A2063G locus mutation, whereas hormone dose was a protective factor. CONCLUSION: A prevalence of macrolide resistance of 80.8% among children was observed in the region. Logistic regression analysis revealed that co-infection with other respiratory pathogens is an independent risk factor for the development of resistance genes, while the use of hormone dosage acts as a protective factor.


Subject(s)
Anti-Bacterial Agents , Drug Resistance, Bacterial , Macrolides , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , RNA, Ribosomal, 23S , Humans , Pneumonia, Mycoplasma/microbiology , Pneumonia, Mycoplasma/drug therapy , Pneumonia, Mycoplasma/epidemiology , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/drug effects , Macrolides/pharmacology , Macrolides/therapeutic use , Female , Male , Drug Resistance, Bacterial/genetics , Child, Preschool , Child , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , RNA, Ribosomal, 23S/genetics , Logistic Models , Infant , Mutation , Risk Factors , Retrospective Studies
19.
Emerg Infect Dis ; 30(8): 1692-1696, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39043456

ABSTRACT

Before the COVID-19 pandemic, Mycoplasma pneumoniae infections emerged during spring to summer yearly in Taiwan, but infections were few during the pandemic. M. pneumoniae macrolide resistance soared to 85.7% in 2020 but declined to 0% during 2022-2023. Continued molecular surveillance is necessary to monitor trends in macrolide-resistant M. pneumoniae.


Subject(s)
Anti-Bacterial Agents , COVID-19 , Drug Resistance, Bacterial , Macrolides , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , SARS-CoV-2 , Humans , Taiwan/epidemiology , Macrolides/pharmacology , Macrolides/therapeutic use , Mycoplasma pneumoniae/drug effects , Mycoplasma pneumoniae/genetics , Pneumonia, Mycoplasma/epidemiology , Pneumonia, Mycoplasma/drug therapy , Pneumonia, Mycoplasma/microbiology , COVID-19/epidemiology , Child , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Child, Preschool , Pandemics , Male , Female , Infant , Adolescent , Microbial Sensitivity Tests
20.
BMC Infect Dis ; 24(1): 758, 2024 Jul 31.
Article in English | MEDLINE | ID: mdl-39085799

ABSTRACT

BACKGROUND: The global prospective surveillance data showed the re-emergence of mycoplasma pneumoniae pneumonia (MPP) in Europe and Asia after the coronavirus disease 2019 pandemic. We sought to observe the effect of macrolide antibiotics in the treatment of MPP carrying a macrolide-resistant mutation gene and the potential of targeted next-generation sequencing (tNGS) as a front-line diagnostic in MPP patients. METHODS: The baseline characteristics of 91 children with MPP hospitalized from January to October 2023 were retrospectively analyzed. They were divided into two groups according to whether carrying the macrolide-resistant mutation or not. The logistic and linear regression analyses were used to determine whether the mutation was a standalone predictive predictor of the duration of fever and hospital length of stay. RESULTS: First, no patients had a fever for ≥ 7 days after macrolide treatment. But length of stay and hormone concentration were significantly different between the two groups (P < 0.05). There were also no statistical association between the mutation and the duration of fever and hospital length of stay. CONCLUSION: Macrolides can be administered to MPP children carrying a macrolide-resistant mutation. tNGS can be seen as a front-line diagnostic in MPP.


Subject(s)
Anti-Bacterial Agents , Drug Resistance, Bacterial , Macrolides , Mutation , Mycoplasma pneumoniae , Pneumonia, Mycoplasma , RNA, Ribosomal, 23S , Humans , Pneumonia, Mycoplasma/drug therapy , Pneumonia, Mycoplasma/microbiology , Macrolides/therapeutic use , Macrolides/pharmacology , Mycoplasma pneumoniae/genetics , Mycoplasma pneumoniae/drug effects , Female , Male , Anti-Bacterial Agents/therapeutic use , Anti-Bacterial Agents/pharmacology , Child, Preschool , Child , Drug Resistance, Bacterial/genetics , Retrospective Studies , RNA, Ribosomal, 23S/genetics , Infant , Length of Stay , Treatment Outcome , High-Throughput Nucleotide Sequencing
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