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1.
FEMS Microbiol Lett ; 3712024 Jan 09.
Article in English | MEDLINE | ID: mdl-39210455

ABSTRACT

BACKGROUND: commensal Neisseria species are part of the oropharyngeal microbiome and play an important role in nitrate reduction and protecting against colonization by pathogenic bacteria. They do, however, also serve as a reservoir of antimicrobial resistance. Little is known about the prevalence of these species in the general population, how this varies by age and how antimicrobial susceptibility varies between species. METHODS: we assessed the prevalence and antimicrobial susceptibility of commensal Neisseria species in the parents (n = 38) and children (n = 50) of 35 families in Belgium. RESULTS: various commensal Neisseria (n = 5) could be isolated from the participants. Most abundant were N. subflava and N. mucosa. Neisseria subflava was detected in 77 of 88 (87.5%) individuals and N. mucosa in 64 of 88 (72.7%). Neisseria mucosa was more prevalent in children [41/50 (82%)] than parents [23/38 (60.5%); P < .05], while N. bacilliformis was more prevalent in parents [7/36 (19.4%)] than children [2/50 (4%); P < .05]. Neisseria bacilliformis had high ceftriaxone minimum inhibitory concentrations (MICs; median MIC 0.5 mg/l; IQR 0.38-0.75). The ceftriaxone MICs of all Neisseria isolates were higher in the parents than in the children. This could be explained by a higher prevalence of N. bacilliformis in the parents. INTERPRETATION: the N. bacilliformis isolates had uniformly high ceftriaxone MICs which warrant further investigation.


Subject(s)
Anti-Bacterial Agents , Microbial Sensitivity Tests , Neisseria , Parents , Humans , Belgium/epidemiology , Neisseria/drug effects , Neisseria/isolation & purification , Neisseria/genetics , Cross-Sectional Studies , Child , Anti-Bacterial Agents/pharmacology , Female , Child, Preschool , Male , Adult , Middle Aged , Adolescent , Drug Resistance, Bacterial , Infant , Oropharynx/microbiology , Prevalence , Young Adult
2.
J Med Microbiol ; 73(8)2024 Aug.
Article in English | MEDLINE | ID: mdl-39212029

ABSTRACT

Introduction. Commensal Neisseria spp. are highly prevalent in the oropharynx as part of the healthy microbiome. N. meningitidis can colonise the oropharynx too from where it can cause invasive meningococcal disease. To identify N. meningitidis, clinical microbiology laboratories often rely on Matrix Assisted Laser Desorption/Ionisation Time of Flight Mass Spectrometry (MALDI-TOF MS).Hypothesis/Gap statement. N. meningitidis may be misidentified by MALDI-TOF MS.Aim. To conduct genomic surveillance of oropharyngeal Neisseria spp. in order to: (i) verify MALDI-TOF MS species identification, and (ii) characterize commensal Neisseria spp. genomes.Methodology. We analysed whole genome sequence (WGS) data from 119 Neisseria spp. isolates from a surveillance programme for oropharyngeal Neisseria spp. in Belgium. Different species identification methods were compared: (i) MALDI-TOF MS, (ii) Ribosomal Multilocus Sequence Typing (rMLST) and (iii) rplF gene species identification. WGS data were used to further characterize Neisseria species found with supplementary analyses of Neisseria cinerea genomes.Results. Based on genomic species identification, isolates from the oropharyngeal Neisseria surveilence study were composed of the following species: N. meningitidis (n=23), N. subflava (n=61), N. mucosa (n=15), N. oralis (n=8), N. cinerea (n=5), N. elongata (n=3), N. lactamica (n=2), N. bacilliformis (n=1) and N. polysaccharea (n=1). Of these 119 isolates, four isolates identified as N. meningitidis (n=3) and N. subflava (n=1) by MALDI-TOF MS, were determined to be N. polysaccharea (n=1), N. cinerea (n=2) and N. mucosa (n=1) by rMLST. Phylogenetic analyses revealed that N. cinerea isolates from the general population (n=3, cluster one) were distinct from those obtained from men who have sex with men (MSM, n=2, cluster two). The latter contained genomes misidentified as N. meningitidis using MALDI-TOF MS. These two N. cinerea clusters persisted after the inclusion of published N. cinerea WGS (n=42). Both N. cinerea clusters were further defined through pangenome and Average Nucleotide Identity (ANI) analyses.Conclusion. This study provides insights into the importance of genomic genus-wide Neisseria surveillance studies to improve the characterization and identification of the Neisseria genus.


Subject(s)
Genome, Bacterial , Multilocus Sequence Typing , Oropharynx , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Whole Genome Sequencing , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Oropharynx/microbiology , Humans , Multilocus Sequence Typing/methods , Neisseria cinerea/genetics , Phylogeny , Neisseria/classification , Neisseria/genetics , Neisseria/isolation & purification , Belgium , Neisseria meningitidis/genetics , Neisseria meningitidis/classification , Neisseria meningitidis/isolation & purification , Neisseriaceae Infections/microbiology , Neisseriaceae Infections/diagnosis
3.
Biol Reprod ; 111(3): 613-624, 2024 Sep 14.
Article in English | MEDLINE | ID: mdl-38972067

ABSTRACT

With ~78 million cases yearly, the sexually transmitted bacterium Neisseria gonorrhoeae is an urgent threat to global public health due to continued emergence of antimicrobial resistance. In the male reproductive tract, untreated infections may cause permanent damage, poor sperm quality, and subsequently subfertility. Currently, few animal models exist for N. gonorrhoeae infection, which has strict human tropism, and available models have limited translatability to human disease. The absence of appropriate models inhibits the development of vital new diagnostics and treatments. However, the discovery of Neisseria musculi, a mouse oral cavity bacterium, offers much promise. This bacterium has already been used to develop an oral Neisseria infection model, but the feasibility of establishing urogenital gonococcal models is unexplored. We inoculated mice via the intrapenile route with N. musculi. We assessed bacterial burden throughout the male reproductive tract, the systemic and tissue-specific immune response 2-weeks postinfection, and the effect of infection on sperm health. Neisseria musculi was found in penis (2/5) and vas deferens (3/5) tissues. Infection altered immune cell counts: CD19+ (spleen, lymph node, penis), F4/80+ (spleen, lymph node, epididymus), and Gr1+ (penis) compared with noninfected mice. This culminated in sperm from infected mice having poor viability, motility, and morphology. We hypothesize that in the absence of testis infection, infection and inflammation in other reproductive is sufficient to damage sperm quality. Many results herein are consistent with outcomes of gonorrhoea infection, indicating the potential of this model as a tool for enhancing the understanding of Neisseria infections of the human male reproductive tract.


Subject(s)
Disease Models, Animal , Neisseria , Male , Animals , Mice , Neisseria/isolation & purification , Gonorrhea/microbiology , Mice, Inbred C57BL , Genitalia, Male/microbiology , Neisseriaceae Infections/microbiology
4.
Article in English | MEDLINE | ID: mdl-39023135

ABSTRACT

A taxogenomic study of three strains (3986T, 51.81, and JF 2415) isolated from rabbits between 1972 and 2000 led to the description of a new Neisseria species. The highest sequence similarity of the 16S rRNA gene was found to Neisseria animalis NCTC 10212T (96.7 %). The 16S rRNA gene similarity above 99 % and average nucleotide identity (ANI) values above 96 % among the strains, indicated that they belong to the same species. At the same time, the strains shared ANI values below 81 % and dDDH values below 24 % with all described Neisseria species. In the bac120 gene phylogenetic tree, the three strains clustered near Neisseria elongata and Neisseria bacilliformis in the Neisseria clade. However, the Neisseria clade is not monophyletic, and includes the type strains of Morococcus cerebrosus, Bergeriella denitrificans, Kingella potus, Uruburuella suis, and Uruburuella testudinis. Neisseria shayeganii clustered outside the clade with members of the genus Eikenella. Amino acid identity (AAI) values were calculated, and a threshold of 71 % was used to circumscribe the genus Neisseria. According to this proposed AAI threshold, strains 3986T, 51.81, and JF 2415 were placed within the genus Neisseria. The cells of the three strains were Gram-stain-negative diplococcobacilli and non-motile. Optimal growth on trypticase soy agar occurred at 37 °C and pH 8.5 in aerobic conditions. Notably, all strains exhibited indole production in the API-NH test, which is atypical for Neisseria and the family Neisseriaceae. The strains exhibited a common set of 68 peaks in their MALDI-TOF MS profiles, facilitating the swift and accurate identification of this species. Based on genotypic and phenotypic data, it is proposed that strains 3986T, 51.81, and JF 2415 represent a novel species within the genus Neisseria, for which the name Neisseria leonii sp. nov. is proposed (type strain 3986T=R726T=CIP 109994T=LMG 32907T).


Subject(s)
Bacterial Typing Techniques , DNA, Bacterial , Liver , Lung , Neisseria , Phylogeny , RNA, Ribosomal, 16S , Sequence Analysis, DNA , Animals , Rabbits , RNA, Ribosomal, 16S/genetics , Neisseria/isolation & purification , Neisseria/classification , Neisseria/genetics , DNA, Bacterial/genetics , Liver/microbiology , Lung/microbiology , Fatty Acids/analysis , Base Composition
5.
Front Cell Infect Microbiol ; 14: 1356907, 2024.
Article in English | MEDLINE | ID: mdl-38863832

ABSTRACT

Introduction: Microbial community composition is closely associated with host disease onset and progression, underscoring the importance of understanding host-microbiota dynamics in various health contexts. Methods: In this study, we utilized full-length 16S rRNA gene sequencing to conduct species-level identification of the microorganisms in the oral cavity of a giant panda (Ailuropoda melanoleuca) with oral malignant fibroma. Results: We observed a significant difference between the microbial community of the tumor side and non-tumor side of the oral cavity of the giant panda, with the latter exhibiting higher microbial diversity. The tumor side was dominated by specific microorganisms, such as Fusobacterium simiae, Porphyromonas sp. feline oral taxon 110, Campylobacter sp. feline oral taxon 100, and Neisseria sp. feline oral taxon 078, that have been reported to be associated with tumorigenic processes and periodontal diseases in other organisms. According to the linear discriminant analysis effect size analysis, more than 9 distinct biomarkers were obtained between the tumor side and non-tumor side samples. Furthermore, the Kyoto Encyclopedia of Genes and Genomes analysis revealed that the oral microbiota of the giant panda was significantly associated with genetic information processing and metabolism, particularly cofactor and vitamin, amino acid, and carbohydrate metabolism. Furthermore, a significant bacterial invasion of epithelial cells was predicted in the tumor side. Discussion: This study provides crucial insights into the association between oral microbiota and oral tumors in giant pandas and offers potential biomarkers that may guide future health assessments and preventive strategies for captive and aging giant pandas.


Subject(s)
Campylobacter , Fusobacterium , Microbiota , Mouth , Porphyromonas , RNA, Ribosomal, 16S , Ursidae , Ursidae/microbiology , Animals , RNA, Ribosomal, 16S/genetics , Porphyromonas/genetics , Porphyromonas/isolation & purification , Porphyromonas/classification , Campylobacter/genetics , Campylobacter/isolation & purification , Campylobacter/classification , Mouth/microbiology , Fusobacterium/genetics , Fusobacterium/isolation & purification , Fibroma/microbiology , Fibroma/veterinary , Neisseria/isolation & purification , Neisseria/genetics , Neisseria/classification , Mouth Neoplasms/microbiology , Mouth Neoplasms/veterinary , Mouth Neoplasms/pathology , Phylogeny , Sequence Analysis, DNA
6.
J Oral Biosci ; 66(2): 300-303, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38703995

ABSTRACT

BACKGROUND: The oral microbiota has recently attracted attention owing to its association with oral and systemic diseases. Accordingly, gaining an understanding of oral microbiota development and the factors influencing it can contribute to preventing the establishment of dysbiotic oral microbiota and, eventually, oral microbiota-related diseases. HIGHLIGHT: In this review, we highlight the results of a longitudinal project focusing on oral microbiota development during early life. At 4 months of age, the oral microbiota of infants was found to differ considerably from the maternal oral microbiota, even though infants acquire oral bacteria from their mothers. At 18 months, although the infant microbiota is still not completely comparable with that of adults, from 4 to 18 months, there is a rapid phase of development, during which the microbial composition undergoes considerable change to a profile more similar to that in adults. During this development, the infant oral microbiota converges into two different profiles with adult-like traits, namely, Streptococcus salivarius- and Neisseria-dominant profiles. This divergence is strongly influenced by dietary habits, with a frequent intake of sweetened beverages being associated with an S. salivarius-dominant profile, which is suspected to be implicated in oral and systemic diseases. CONCLUSION: The foundation of the adult oral microbiota may be established by 18 months of age, and the developmental period from 4 to 18 months may be an appropriate period during which to modify the microbial balance to obtain a desirable healthy state. In particular, dietary habits during this period warrant close attention.


Subject(s)
Microbiota , Mouth , Humans , Mouth/microbiology , Infant , Microbiota/physiology , Streptococcus salivarius , Neisseria/isolation & purification
7.
Vet Pathol ; 61(5): 783-791, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38440886

ABSTRACT

Three cats, aged 2 to 11 years, presented to the University of Minnesota Veterinary Diagnostic Laboratory over a 3-year period following euthanasia or death due to respiratory distress. Thoracic radiographs revealed nodular, soft tissue opacities throughout the lung fields in all cases. On postmortem examination, approximately 60% to 80% of the lung parenchyma were expanded by multifocal to coalescing, well-demarcated, beige, semi-firm nodules. Histologically, large numbers of neutrophils, fewer macrophages, fibrin, and cellular and karyorrhectic debris effaced the pulmonary parenchyma. The inflammatory foci contained aggregates of gram-negative cocci. 16s rRNA Sanger sequencing and whole-genome sequencing identified the bacteria isolated from the lung of all cats under aerobic conditions as a novel Neisseria spp. Based on whole-genome sequence analysis, all 3 sequences shared 92.71% and 92.67% average nucleotide identity with closely related Neisseria animaloris NZ LR134440T and Neisseria animaloris GCA 002108605T, respectively. The in silico DNA-DNA hybridization identity compared to our isolates was 46.6% and 33.8% with strain DSM Neisseria zoodegmatis 21642 and strain DSM 21643, respectively. All 3 sequences have less than 95% average nucleotide identity and less than 70% DNA-DNA hybridization identity, suggesting that the 3 isolates are a novel species of the genus Neisseria. Infection with Neisseria spp. induces an embolic pneumonia in cats that radiographically and pathologically resembles a metastatic neoplastic process and should be considered among the etiologic differential diagnoses in cases of infectious pulmonary disease with a disseminated, nodular lung pattern.


Subject(s)
Cat Diseases , Lung , Neisseria , Animals , Cats , Cat Diseases/microbiology , Cat Diseases/pathology , Neisseria/isolation & purification , Lung/pathology , Lung/microbiology , Male , Female , RNA, Ribosomal, 16S/genetics , Pneumonia, Bacterial/veterinary , Pneumonia, Bacterial/pathology , Pneumonia, Bacterial/microbiology , Whole Genome Sequencing , Phylogeny
8.
Sci Rep ; 12(1): 9, 2022 01 07.
Article in English | MEDLINE | ID: mdl-34997050

ABSTRACT

Non-pathogenic Neisseria are a reservoir of antimicrobial resistance genes for pathogenic Neisseria meningitidis and Neisseria gonorrhoeae. Men who have sex with men (MSM) are at risk of co-colonization with resistant non-pathogenic and pathogenic Neisseria. We assessed if the antimicrobial susceptibility of non-pathogenic Neisseria among MSM differs from a general population and if antimicrobial exposure impacts susceptibility. We recruited 96 participants at our center in Belgium: 32 employees, 32 MSM who did not use antibiotics in the previous 6 months, and 32 MSM who did. Oropharyngeal Neisseria were cultured and identified with MALDI-TOF-MS. Minimum inhibitory concentrations for azithromycin, ceftriaxone and ciprofloxacin were determined using E-tests® and compared between groups with non-parametric tests. Non-pathogenic Neisseria from employees as well as MSM were remarkably resistant. Those from MSM were significantly less susceptible than employees to azithromycin and ciprofloxacin (p < 0.0001, p < 0.001), but not ceftriaxone (p = 0.3). Susceptibility did not differ significantly according to recent antimicrobial exposure in MSM. Surveilling antimicrobial susceptibility of non-pathogenic Neisseria may be a sensitive way to assess impact of antimicrobial exposure in a population. The high levels of antimicrobial resistance in this survey indicate that novel resistance determinants may be readily available for future transfer from non-pathogenic to pathogenic Neisseria.


Subject(s)
Anti-Bacterial Agents/pharmacology , Neisseria/drug effects , Oropharynx/microbiology , Belgium , Ciprofloxacin/pharmacology , Homosexuality, Male/statistics & numerical data , Humans , Male , Microbial Sensitivity Tests , Middle Aged , Neisseria/classification , Neisseria/genetics , Neisseria/isolation & purification , Penicillins/pharmacology , Tetracycline/pharmacology
9.
PLoS One ; 16(9): e0257449, 2021.
Article in English | MEDLINE | ID: mdl-34529734

ABSTRACT

Despite the formation of biofilms on catheters for extracorporeal membrane oxygenation (ECMO), some patients do not show bacteremia. To elucidate the specific linkage between biofilms and bacteremia in patients with ECMO, an improved understanding of the microbial community within catheter biofilms is necessary. Hence, we aimed to evaluate the biofilm microbiome of ECMO catheters from adults with (n = 6) and without (n = 15) bacteremia. The microbiomes of the catheter biofilms were evaluated by profiling the V3 and V4 regions of bacterial 16s rRNA genes using the Illumina MiSeq sequencing platform. In total, 2,548,172 reads, with an average of 121,341 reads per sample, were generated. Although alpha diversity was slightly higher in the non-bacteremic group, the difference was not statistically significant. In addition, there was no difference in beta diversity between the two groups. We found 367 different genera, of which 8 were present in all samples regardless of group; Limnohabitans, Flavobacterium, Delftia, Massilia, Bacillus, Candidatus, Xiphinematobacter, and CL0-1 showed an abundance of more than 1% in the sample. In particular, Arthrobacter, SMB53, Neisseria, Ortrobactrum, Candidatus Rhabdochlamydia, Deefgae, Dyella, Paracoccus, and Pedobacter were highly abundant in the bacteremic group. Network analysis indicated that the microbiome of the bacteremic group was more complex than that of the non-bacteremic group. Flavobacterium and CL0.1, which were abundant in the bacteremic group, were considered important genera because they connected different subnetworks. Biofilm characteristics in ECMO catheters varied according to the presence or absence of bacteremia. There were no significant differences in diversity between the two groups, but there were significant differences in the community composition of the biofilms. The biofilm-associated community was dynamic, with the bacteremic group showing very complex network connections within the microbiome.


Subject(s)
Bacteremia/microbiology , Catheter-Related Infections/microbiology , Extracorporeal Membrane Oxygenation/instrumentation , Microbiota , Arthrobacter/genetics , Arthrobacter/isolation & purification , Arthrobacter/physiology , Bacteremia/pathology , Bacteria/genetics , Bacteria/isolation & purification , Biofilms , Catheter-Related Infections/pathology , Female , Humans , Male , Middle Aged , Neisseria/genetics , Neisseria/isolation & purification , Neisseria/physiology , RNA, Ribosomal, 16S/analysis , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 16S/metabolism , Retrospective Studies
10.
J Biosci ; 462021.
Article in English | MEDLINE | ID: mdl-34148877

ABSTRACT

Diagnosis and treatment of various diseases in Ayurveda, the Indian system of medicine, relies on 'prakriti' phenotyping of individuals into predominantly three constitutions, kapha, pitta and vata. Recent studies propose that microbiome play an integral role in precision medicine. A study of the relationship between prakriti - the basis of personalized medicine in Ayurveda and that of gut microbiome, and possible biomarker of an individual's health, would vastly improve precision therapy. Towards this, we analyzed bacterial metagenomes from buccal (oral microbiome) and fecal (gut microbiome) samples of 272 healthy individuals of various predominant prakritis. Major bacterial genera from gut microbiome included Prevotella, Bacteroides and Dialister while oral microbiome included Streptococcus, Neisseria, Veilonella, Haemophilus, Porphyromonas and Prevotella. Though the core microbiome was shared across all individuals, we found prakriti specific signatures such as preferential presence of Paraprevotella and Christensenellaceae in vata individuals. A comparison of core gut microbiome of each prakriti with a database of 'healthy' microbes identified microbes unique to each prakriti with functional roles similar to the physiological characteristics of various prakritis as described in Ayurveda. Our findings provide evidence to Ayurvedic interventions based on prakriti phenotyping and possible microbial biomarkers that can stratify the heterogenous population and aid in precision therapy.


Subject(s)
Medicine, Ayurvedic/methods , Metagenome , Precision Medicine/methods , Symbiosis/physiology , Adult , Bacterial Typing Techniques , Bacteroides/classification , Bacteroides/genetics , Bacteroides/isolation & purification , DNA, Bacterial/genetics , Feces/microbiology , Female , Gastrointestinal Microbiome/genetics , Haemophilus/classification , Haemophilus/genetics , Haemophilus/isolation & purification , Healthy Volunteers , Humans , Male , Mouth/microbiology , Neisseria/classification , Neisseria/genetics , Neisseria/isolation & purification , Phylogeny , Porphyromonas/classification , Porphyromonas/genetics , Porphyromonas/isolation & purification , Prevotella/classification , Prevotella/genetics , Prevotella/isolation & purification , Streptococcus/classification , Streptococcus/genetics , Streptococcus/isolation & purification , Veillonella/classification , Veillonella/genetics , Veillonella/isolation & purification , Veillonellaceae/classification , Veillonellaceae/genetics , Veillonellaceae/isolation & purification
11.
Sci Rep ; 10(1): 16652, 2020 10 06.
Article in English | MEDLINE | ID: mdl-33024169

ABSTRACT

Recently, it was suggested that the nitrite (NO2-) produced from NO3- by oral bacteria might contribute to oral and general health. Therefore, we aimed to clarify the detailed information about the bacterial NO2-production in the oral biofilm. Dental plaque and tongue-coating samples were collected, then the NO2-producing activity was measured. Furthermore, the composition of the NO2--producing bacterial population were identified using the Griess reagent-containing agar overlay method and molecular biological method. NO2--producing activity per mg wet weight varied among individuals but was higher in dental plaque. Additionally, anaerobic bacteria exhibited higher numbers of NO2--producing bacteria, except in the adults' dental plaque. The proportion of NO2--producing bacteria also varied among individuals, but a positive correlation was found between NO2--producing activity and the number of NO2--producing bacteria, especially in dental plaque. Overall, the major NO2--producing bacteria were identified as Actinomyces, Schaalia, Veillonella and Neisseria. Furthermore, Rothia was specifically detected in the tongue coatings of children. These results suggest that dental plaque has higher NO2--producing activity and that this activity depends not on the presence of specific bacteria or the bacterial compositions, but on the number of NO2--producing bacteria, although interindividual differences were detected.


Subject(s)
Actinomyces/metabolism , Actinomycetaceae/metabolism , Bacteria, Anaerobic/metabolism , Microbiota , Mouth/microbiology , Nitrites/metabolism , Actinomyces/isolation & purification , Actinomycetaceae/isolation & purification , Adolescent , Adult , Bacteria, Anaerobic/isolation & purification , Biofilms , Child , Child, Preschool , Dental Plaque/microbiology , Female , Humans , Male , Micrococcaceae/isolation & purification , Micrococcaceae/metabolism , Neisseria/isolation & purification , Neisseria/metabolism , Veillonella/isolation & purification , Veillonella/metabolism , Young Adult
12.
BMC Infect Dis ; 20(1): 619, 2020 Aug 24.
Article in English | MEDLINE | ID: mdl-32831055

ABSTRACT

BACKGROUND: Neisseria macacae was discovered in the oral cavity of monkeys in 1983. In humans, it has been isolated from the upper respiratory tract of neutropenic patients. However, only two cases of N. macacae bacteremia have been reported in a 65-year-old man with infective endocarditis and a 5-month-old child with fever and petechiae. There are no reports of infections in cancer patients. Here, we present two cases of N. macacae bacteremia in cancer patients. CASE PRESENTATION: In the first case, a 42-year-old woman who underwent ovarian cancer surgery presented with duodenal invasion associated with multiple lymph node metastasis. N. macacae was isolated from her blood culture and identified using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry (MS). In the second case, a 69-year-old woman with a long-standing history of esophagogastric junction cancer presented with fever. She had stage IVB cancer with lung, bone, and multiple lymph node metastasis. The last chemotherapy was administered 5 weeks before N. macacae was detected using MALDI-TOF MS and nitrate test negative. In both cases, transthoracic echography showed no vegetation. Antibiotics were administered for 14 and 13 days in the first and second cases, respectively. In both cases, fever alleviated on day 4 of antibiotic administration. Both patients were discharged after their conditions improved. CONCLUSIONS: This, to our knowledge, is the first report of N. macacae bacteremia in cancer patients. Both patients, mucosal damage was observed in the upper gastrointestinal tract. Therefore, exclusion diagnosis suggested that bacteremia invasion was caused by mucosal rupture in both cases. Both cases responded well to treatment with ß-lactam antibiotics and improved after 2 weeks. Modifying the treatment based on the source of the infection may shorten the treatment period. Therefore, further research on N. macacae bacteremia is necessary. Immunocompromised patients such as those with cancer are susceptible to mucosal damage by unusual bacterial species such as N. macacae despite not having contact with monkeys.


Subject(s)
Bacteremia/drug therapy , Bacteremia/microbiology , Neisseria/pathogenicity , Adult , Aged , Anti-Bacterial Agents/therapeutic use , Blood Culture/methods , Endocarditis, Bacterial/microbiology , Esophageal Neoplasms/microbiology , Esophagogastric Junction/pathology , Female , Humans , Male , Neisseria/genetics , Neisseria/isolation & purification , Ovarian Neoplasms/microbiology , RNA, Ribosomal, 16S , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods
13.
Microb Genom ; 6(9)2020 09.
Article in English | MEDLINE | ID: mdl-32845827

ABSTRACT

Commensal non-pathogenic Neisseria spp. live within the human host alongside the pathogenic Neisseria meningitidis and Neisseria gonorrhoeae and due to natural competence, horizontal gene transfer within the genus is possible and has been observed. Four distinct Neisseria spp. isolates taken from the throats of two human volunteers have been assessed here using a combination of microbiological and bioinformatics techniques. Three of the isolates have been identified as Neisseria subflava biovar perflava and one as Neisseria cinerea. Specific gene clusters have been identified within these commensal isolate genome sequences that are believed to encode a Type VI Secretion System, a newly identified CRISPR system, a Type IV Secretion System unlike that in other Neisseria spp., a hemin transporter, and a haem acquisition and utilization system. This investigation is the first to investigate these systems in either the non-pathogenic or pathogenic Neisseria spp. In addition, the N. subflava biovar perflava possess previously unreported capsule loci and sequences have been identified in all four isolates that are similar to genes seen within the pathogens that are associated with virulence. These data from the four commensal isolates provide further evidence for a Neisseria spp. gene pool and highlight the presence of systems within the commensals with functions still to be explored.


Subject(s)
Bacterial Proteins/genetics , Neisseria/classification , Pharynx/microbiology , Whole Genome Sequencing/methods , Gene Transfer, Horizontal , Healthy Volunteers , High-Throughput Nucleotide Sequencing , Humans , Multigene Family , Neisseria/genetics , Neisseria/isolation & purification , Neisseria/pathogenicity , Phylogeny , Symbiosis , Type VI Secretion Systems/genetics , Virulence Factors/genetics
14.
Emerg Microbes Infect ; 9(1): 1864-1868, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32757712

ABSTRACT

Infective endocarditis caused by Neisseria macacae in humans is extremely rare. We presented here a case of N. macacae infective endocarditis in a 61-year-old man with a native aortic valve infection. N. macacae was isolated from blood culture and was detected by nanopore-based metagenomic sequencing in the vegetations. Finally, the patient recovered completely after surgery and antibiotic therapy.


Subject(s)
Endocarditis, Bacterial/diagnosis , Endocarditis, Bacterial/therapy , Neisseria/isolation & purification , Sequence Analysis, DNA/methods , Anti-Bacterial Agents/therapeutic use , Blood Culture , Endocarditis, Bacterial/blood , Heart Valve Prosthesis Implantation , Humans , Male , Middle Aged , Nanopore Sequencing , Neisseria/genetics , Neisseria/growth & development , Treatment Outcome
15.
Int J Pediatr Otorhinolaryngol ; 134: 110058, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32388082

ABSTRACT

INTRODUCTION: Otitis media with effusion (OME) is one of the most common pediatric diseases worldwide. Several studies have analyzed the diversity of the microbiomes found in the middle ear effusions (MEEs) of populations from developed countries. However, no microbiological studies of MEEs from Chinese children with OME have been reported. This study investigated the middle ear and adenoid microbiological profiles of children with OME, and compared the microbial flora of the adenoid between children with and without otitis media. METHODS: MEEs and adenoid swabs were acquired from 15 children undergoing ventilation tube insertion and adenoidectomy. Adenoid swabs from 15 patients with no ear disease were used as controls. Samples were analyzed by 16S rRNA sequencing. Operational taxonomic units (OTUs) abundance information were normalized. Alpha diversity analyses were used to assess the richness and diversity of the microbial community for each sample. Beta diversity analyses were used to determine the inter-group variability between microbiome structure. RESULTS: Based on the mean relative abundance, the MEEs were dominated by Haemophilus (14.75%), Staphylococcus (9.37%) and Halomonas (7.85%), and the bacterial compositions of the adenoids in the OME groups were dominated by Haemophilus (21.87%), Streptococcus (19.65%), and Neisseria (5.8%). The bacterial compositions in the adenoids of the controls were dominated by Haemophilus (15.96%), Streptococcus (13.33%), and Moraxella (12.28%). Alpha diversity analyses showed that there were no significant differences in microbiome richness or diversity between the middle ear effusions (TM) and adenoids (TA) of OME subjects. Adenoid samples from OME patients (TA) and control patients (CA) were also similar. Beta diversity analyses showed that the microbiomes of the adenoids in OME patients were also similar to that of controls. However, the microbiome structure of middle ear effusions was dissimilar to those of the adenoids in OME patients according to beta diversity analyses. CONCLUSIONS: Our results confirmed the microbial diversity of MEEs among Chinese children. However, the dissimilar microbiome composition between samples taken from the surface of the adenoids and from the middle ear effusions challenges the conventional theory that the adenoid serves as a microbial reservoir in children with otitis media with effusion.


Subject(s)
Adenoids/microbiology , Ear, Middle/microbiology , Otitis Media with Effusion/microbiology , Adenoids/pathology , Case-Control Studies , Child , Child, Preschool , Ear, Middle/pathology , Female , Haemophilus/isolation & purification , Halomonas/isolation & purification , Humans , Hypertrophy/microbiology , Male , Microbiota , Moraxella/isolation & purification , Neisseria/isolation & purification , Otitis Media with Effusion/surgery , Staphylococcus/isolation & purification , Streptococcus/isolation & purification
16.
Acta Microbiol Immunol Hung ; 67(4): 258-260, 2020 Mar 30.
Article in English | MEDLINE | ID: mdl-32223307

ABSTRACT

MALDI-TOF MS provides fast, easy to perform and cost-effective diagnosis in clinical microbiology laboratories, however in some cases results of MALDI-TOF MS should be confirmed with additional tests. This confirmation is especially important for causes of life-threatening infections like Neisseria meningitidis. In our laboratory, three isolates were identified as N. meningitidis by Bruker MALDI Biotyper (BD, USA) between April 2018 and March 2019 from clinical specimens of blood, sputum, and urine. 16S rRNA sequencing was performed for further investigation. Two of the isolates were identified as Neisseria subflava and only one was confirmed as N. meningitidis by sequencing. These results show that MALDI-TOF MS is not always reliable in the diagnosis of N. meningitidis and clinical microbiologists should confirm these results with additional tests. Also, clinical correlations should be determined. Accurate identification of this microorganism is very important because of the necessity of prophylactic antimicrobial usage and biosafety precautions. Enlarged databases of Neisseria species are needed to overcome this problem.


Subject(s)
Bacterial Typing Techniques/methods , Neisseria meningitidis/classification , Neisseria/classification , Neisseriaceae Infections/microbiology , Adult , Diagnostic Errors , Female , Genes, rRNA , Humans , Male , Middle Aged , Neisseria/genetics , Neisseria/isolation & purification , Neisseria meningitidis/genetics , Neisseria meningitidis/isolation & purification , Neisseriaceae Infections/diagnosis , RNA, Ribosomal, 16S/genetics , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
17.
Arch Microbiol ; 202(5): 1085-1095, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32034425

ABSTRACT

The current study aimed at the determination of the impact of obesity on the salivary microbiome in adolescents. Sixty subjects ranging 14-17 years old were enrolled (obese: n = 30-50% females, and normal weight: n = 30-50% females). Stimulated saliva was collected for denaturing gradient gel electrophoresis (DGGE) band patterns and massive 16S rRNA gene sequencing using the Ion Torrent platform. Overall, data analysis revealed that male subjects harbored a higher diverse salivary microbiome, defined by a significant higher richness (32.48 versus 26.74) and diversity (3.36 versus 3.20), higher Simpson values (0.96 versus 0.95) and distinct bacterial community structure considering either sex or condition (p < 0.05). Bacterial community fingerprinting analysis in human saliva showed a positive correlation with increased body mass index (BMI) in adolescents. Veillonella, Haemophilus and Prevotella occurrence was found to be affected by BMI, whereas Neisseria and Rothia occurrence was significantly impacted by sex in obese subjects. Our findings suggest that male and female adolescents may harbor a naturally distinct salivary microbiota and that obesity may specifically have an impact on their oral bacterial community. The potential dysbiotic oral microbiome in obese adolescents raises new insights on the etiology and prevention of future conditions in these populations.


Subject(s)
Bacteria/classification , Bacteria/isolation & purification , Microbiota/genetics , Obesity/microbiology , Saliva/microbiology , Adolescent , Bacteria/genetics , Denaturing Gradient Gel Electrophoresis , Female , Haemophilus/isolation & purification , Humans , Male , Micrococcaceae/isolation & purification , Neisseria/isolation & purification , Prevotella/isolation & purification , RNA, Ribosomal, 16S/genetics , Veillonella/isolation & purification
19.
Emerg Infect Dis ; 26(2): 366-369, 2020 02.
Article in English | MEDLINE | ID: mdl-31961306

ABSTRACT

We describe 2 human cases of infection with a new Neisseria species (putatively N. brasiliensis), 1 of which involved bacteremia. Genomic analyses found that both isolates were distinct strains of the same species, were closely related to N. iguanae, and contained a capsule synthesis operon similar to N. meningitidis.


Subject(s)
Meningococcal Infections/diagnosis , Neisseria/isolation & purification , Aged , Brazil , Female , Humans , Male , Middle Aged , Neisseria/genetics
20.
J Med Microbiol ; 68(12): 1793-1801, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31674897

ABSTRACT

Introduction. Colonization by Neisseria meningitidis is the pre-requisite for the development of disease. We present the findings of a cross-sectional investigation onto the oropharyngeal carriage of N. meningitidis and Neisseria species in the population aged 3 to 21 in Paraguay.Aim. Carriage prevalence by age groups, risk factors associated with carriage, and phenotypic and genotypic characteristics of strains are described.Methodology. We collected 2011 oropharyngeal swabs from consenting participants aged 3-21 years. Infants were recruited at immunization clinics, and older children and young adults were identified at schools and universities. A single oropharyngeal swab was collected and processed for the identification and isolation of Neisseria. Additionally, participants, or their legal guardian if these were minors, were requested to fill a standardized questionnaire.Results. N. meningitidis was isolated in 42/2011 (2.1 %) participants, while other Neisseria spp. were identified in 306/2011 (15.2 %) subjects: N. cinerea and N. lactamica were identified in 39/2011 (1.9 %) and 43/2011 (2.2 %), respectively. Meningococcal strains belonged to ten different clonal complexes, of which six are associated with invasive disease (ST-32/ET5 complex, ST-11/ET37 complex, ST-103 complex, ST-167 complex, ST-35 complex and ST-41/44 complex/lineage 3).Conclusion. Prevalence of N. meningitidis carriage was low compared to that reported from other settings, however, the overall carriage of Neisseria spp. (including N. meningitidis) was comparable to meningococcal carriage prevalence reported in the literature. This study is the first of its kind conducted in Paraguay, and one of the few known in the Southern Cone of Latin America.


Subject(s)
Carrier State/epidemiology , Neisseria meningitidis/isolation & purification , Neisseria/isolation & purification , Oropharynx/microbiology , Adolescent , Child , Child, Preschool , Cross-Sectional Studies , Female , Humans , Male , Neisseria/classification , Paraguay , Young Adult
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