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1.
Food Chem ; 462: 140923, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39208740

ABSTRACT

Cadmium (Cd) in rice is a significant concern for its quality and safety. Currently, there is a crucial need to develop cost-effective and efficient ways to remove Cd or re-utilize Cd-contaminated rice. The food additive sodium erythorbate is produced via 2-ketogluconic acid (2KGA) fermentation by Pseudomonas plecoglossicida and lactonization using starch-rich raw materials, such as rice. We aimed to determine whether cadmium-contaminated rice can be used to produce sodium erythorbate. To achieve this aim, the migration of cadmium during the production of sodium erythorbate from Cd-contaminated rice was studied. Five rice varieties with different Cd contents from 0.10 to 0.68 mg/kg were used as raw materials. The results indicated the presence of Cd in rice and CaCO3 did not have a notable impact on the fermentation performance of 2KGA. The acidification of 2KGA fermentation broth, the addition of K4Fe(CN)6·3H2O and ZnSO4, and 2KGA purification using cation exchange effectively removed >98% of the Cd in the fermentation broth, but the 2KGA yield remained high at approximately 94%. The sodium erythorbate synthesized from Cd-contaminated rice was of high quality and free from Cd, meeting the requirements of the Chinese National Standard, GB 1886.28-2016. The study provided a safe and effective strategy for comprehensively utilizing Cd-contaminated rice to produce high value-added food additive.


Subject(s)
Cadmium , Fermentation , Food Additives , Food Contamination , Oryza , Oryza/chemistry , Oryza/metabolism , Oryza/microbiology , Cadmium/metabolism , Cadmium/analysis , Food Contamination/analysis , Food Additives/analysis , Food Additives/metabolism , Pseudomonas/metabolism , Sugar Acids/metabolism , Sugar Acids/chemistry , Sugar Acids/analysis
2.
Chemosphere ; 364: 143140, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39173833

ABSTRACT

Isosaccharinic acid (HISA, or ISA in its deprotonated form) is the main degradation product of cellulose under alkaline conditions. It can form strong complexes with radionuclides and other toxic metal ions, eventually enhancing their mobility in the context of nuclear waste repositories and other environmental systems. 99Tc is a redox-sensitive, long-lived fission product produced in high yield in nuclear reactors. The solubility of 99Tc(IV) was investigated in 0.5 M NaCl‒NaISA‒NaOH solutions with 6 ≤ pHm ≤ 12.5 and 10-6 M ≤ [ISA] ≤ 0.2 M. Complete chemical and thermodynamic models were derived on the basis of solubility data, (pe + pHm) measurements, redox speciation, and solid phase characterization. These models include the previously unreported aqueous complexes TcO(OH)(ISA)2‒ and TcO(OH)2(ISA)22-. In spite of the small size and high polarizability of the Tc4+ metal ion, the Tc(IV)-ISA complexes described in this work are significantly weaker than other ISA complexes formed with larger M4+ metal ions, i.e., Zr, Pu and U. This unexpected behavior can be possibly explained by the strong hydrolysis of Tc(IV) and corresponding stabilization of the TcO2+ moiety, which does not occur for other M(IV) systems. Thermodynamic data derived in this work can be implemented in geochemical calculations of relevance in the context of nuclear waste disposal and other environmental applications.


Subject(s)
Solubility , Thermodynamics , Sugar Acids/chemistry , Technetium/chemistry , Coordination Complexes/chemistry , Radioactive Waste , Models, Chemical , Oxidation-Reduction
3.
Molecules ; 29(16)2024 Aug 22.
Article in English | MEDLINE | ID: mdl-39203058

ABSTRACT

The presence and the level of antibodies in human sera against bacterial glycans are indications of prior encounters with similar antigens and/or the bacteria that express them by the immune system. An increasing number of pathogenic bacteria that cause human diseases have been shown to express polysaccharides containing a bacterial nonulosonic acid called 5,7-di-N-acetyllegionaminic acid (Leg5,7Ac2). To investigate the immune recognition of Leg5,7Ac2, which is critical for the fight against bacterial infections, a highly effective chemoenzymatic synthon strategy was applied to construct a library of α2-3/6-linked Leg5,7Ac2-glycans via their diazido-derivatives (Leg5,7diN3-glycans) formed by efficient one-pot three-enzyme (OP3E) synthetic systems from a diazido-derivative of a six-carbon monosaccharide precursor. Glycan microarray studies using this synthetic library of a Leg5,7Ac2-capped collection of diverse underlying glycan carriers and their matched sialoside counterparts revealed specific recognition of Leg5,7Ac2 by human IgG antibodies pooled from thousands of healthy donors (IVIG), suggesting prior human encounters with Leg5,7Ac2-expressing pathogenic bacteria at the population level. These biologically relevant Leg5,7Ac2-glycans and their immune recognition assays are important tools to begin elucidating their biological roles, particularly in the context of infection and host-pathogen interactions.


Subject(s)
Immunoglobulin G , Microarray Analysis , Polysaccharides , Sialic Acids , Humans , Polysaccharides/immunology , Polysaccharides/chemistry , Immunoglobulin G/immunology , Microarray Analysis/methods , Sialic Acids/chemistry , Sugar Acids/chemistry , Sugar Acids/metabolism , Antibodies, Bacterial/immunology
4.
Org Lett ; 26(24): 5215-5219, 2024 Jun 21.
Article in English | MEDLINE | ID: mdl-38861677

ABSTRACT

Bacterial nonulosonic acids (NulOs), which feature a nine-carbon backbone, are associated with the biological functions of bacterial glycans. Here, an orthogonally protected 5-amino-7-azido-3,5,7,9-tetradeoxy-d-glycero-l-gluco-2-nonulosonic acid related to Fusobacterium nucleatum ATCC 23726 NulO was synthesized from N-acetylneuraminic acid with sequential performance of C5,7 azidation, C9 deoxygenation, C4 epimerization, and N5,7 differentiation. The C5 azido group in the obtained 5,7-diazido-NulO can be regioselectively reduced to differentiate the two amino groups.


Subject(s)
N-Acetylneuraminic Acid , Sugar Acids , N-Acetylneuraminic Acid/chemistry , N-Acetylneuraminic Acid/chemical synthesis , Molecular Structure , Sugar Acids/chemistry , Sugar Acids/chemical synthesis , Fusobacterium nucleatum/chemistry , Azides/chemistry
5.
J Agric Food Chem ; 72(19): 10995-11001, 2024 May 15.
Article in English | MEDLINE | ID: mdl-38701424

ABSTRACT

The titer of the microbial fermentation products can be increased by enzyme engineering. l-Sorbosone dehydrogenase (SNDH) is a key enzyme in the production of 2-keto-l-gulonic acid (2-KLG), which is the precursor of vitamin C. Enhancing the activity of SNDH may have a positive impact on 2-KLG production. In this study, a computer-aided semirational design of SNDH was conducted. Based on the analysis of SNDH's substrate pocket and multiple sequence alignment, three modification strategies were established: (1) expanding the entrance of SNDH's substrate pocket, (2) engineering the residues within the substrate pocket, and (3) enhancing the electron transfer of SNDH. Finally, mutants S453A, L460V, and E471D were obtained, whose specific activity was increased by 20, 100, and 10%, respectively. In addition, the ability of Gluconobacter oxidans WSH-004 to synthesize 2-KLG was improved by eliminating H2O2. This study provides mutant enzymes and metabolic engineering strategies for the microbial-fermentation-based production of 2-KLG.


Subject(s)
Bacterial Proteins , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Gluconobacter/enzymology , Gluconobacter/genetics , Gluconobacter/metabolism , Sugar Acids/metabolism , Sugar Acids/chemistry , Fermentation , Protein Engineering , Metabolic Engineering , Carbohydrate Dehydrogenases/metabolism , Carbohydrate Dehydrogenases/genetics , Carbohydrate Dehydrogenases/chemistry , Kinetics
6.
Chemistry ; 30(41): e202400703, 2024 Jul 19.
Article in English | MEDLINE | ID: mdl-38682414

ABSTRACT

Pseudaminic acid (Pse) is found in the polysaccharide structures of the cell surface of various Gram-negative pathogenic bacteria including Acinetobacter baumannii and considered as an important component of cell surface glycans including oligosaccharides and glycoproteins. However, the glycosyltransferase that is responsible for the Pse glycosylation in A. baumannii remains unknown yet. In this study, through comparative genomics analysis of Pse-positive and negative A. baumannii clinical isolates, we identified a potential glycosyltransferase, KpsS1, located right downstream of the Pse biosynthesis genetic locus. Deletion of this gene in an Pse-positive A. baumannii strain, Ab8, impaired the glycosylation of Pse to the surface CPS and proteins, while the gene knockout strain, Ab8ΔkpsS1, could still produce Pse with 2.86 folds higher amount than that of Ab8. Furthermore, impairment of Pse glycosylation affected the morphology and virulence potential of A. baumannii, suggesting the important role of this protein. This study will provide insights into the further understanding of Pse in bacterial physiology and pathogenesis.


Subject(s)
Acinetobacter baumannii , Glycosyltransferases , Acinetobacter baumannii/metabolism , Glycosylation , Glycosyltransferases/metabolism , Glycosyltransferases/genetics , Sugar Acids/metabolism , Sugar Acids/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Virulence
7.
Sci Rep ; 13(1): 12593, 2023 08 03.
Article in English | MEDLINE | ID: mdl-37537165

ABSTRACT

Sialic acids (Sias) are a class of sugar molecules with a parent nine-carbon neuraminic acid, generally present at the ends of carbohydrate chains, either attached to cellular surfaces or as secreted glycoconjugates. Given their position and structural diversity, Sias modulate a wide variety of biological processes. However, little is known about the role of Sias in human adipose tissue, or their implications for health and disease, particularly among individuals following different dietary patterns. The goal of this study was to measure N-Acetylneuraminic acid (Neu5Ac), N-Glycolylneuraminic acid (Neu5Gc), and 2-keto-3-deoxy-D-glycero-D-galacto-nononic acid (KDN) concentrations in adipose tissue samples from participants in the Adventist Health Study-2 (AHS-2) and to compare the abundance of these Sias in individuals following habitual, long-term vegetarian or non-vegetarian dietary patterns. A method was successfully developed for the extraction and detection of Sias in adipose tissue. Sias levels were quantified in 52 vegans, 56 lacto-vegetarians, and 48 non-vegetarians using LC-MS/MS with Neu5Ac-D-1,2,3-13C3 as an internal standard. Dietary groups were compared using linear regression. Vegans and lacto-ovo-vegetarians had significantly higher concentrations of Neu5Ac relative to non-vegetarians. While KDN levels tended to be higher in vegans and lacto-ovo-vegetarians, these differences were not statistically significant. However, KDN levels were significantly inversely associated with body mass index. In contrast, Neu5Gc was not detected in human adipose samples. It is plausible that different Neu5Ac concentrations in adipose tissues of vegetarians, compared to those of non-vegetarians, reflect a difference in the baseline inflammatory status between the two groups. Epidemiologic studies examining levels of Sias in human adipose tissue and other biospecimens will help to further explore their roles in development and progression of inflammatory conditions and chronic diseases.


Subject(s)
Sialic Acids , Sugar Acids , Humans , Sialic Acids/chemistry , Chromatography, Liquid , Sugar Acids/chemistry , Tandem Mass Spectrometry , Adipose Tissue , Diet, Vegetarian
8.
Org Lett ; 24(16): 2998-3002, 2022 04 29.
Article in English | MEDLINE | ID: mdl-35420827

ABSTRACT

Metaperiodate cleavage of the glycerol side chain from an N-acetyl neuraminic acid-derived thioglycoside and condensation with the two enantiomers of the Ellman sulfinamide afford two diastereomeric N-sulfinylimines from which bacterial sialic acid donors with the legionaminic and acetaminic acid configurations and their 8-epi-isomers are obtained by samarium iodide-mediated coupling with acetaldehyde and subsequent manipulations. A variation on the theme, with inversion of the configuration at C5, similarly provides two differentially protected pseudaminic acid donors.


Subject(s)
N-Acetylneuraminic Acid , Sialic Acids , Sialic Acids/chemistry , Sugar Acids/chemistry
9.
J Korean Med Sci ; 36(49): e333, 2021 Dec 20.
Article in English | MEDLINE | ID: mdl-34931497

ABSTRACT

BACKGROUND: Chronic kidney disease (CKD) is a global health problem, and there is no permanent treatment for reversing kidney failure; thus, early diagnosis and effective treatment are required. Gene therapy has outstanding potential; however, the lack of safe gene delivery vectors, a reasonable transfection rate, and kidney targeting ability limit its application. Nanoparticles can offer innovative ways to diagnose and treat kidney diseases as they facilitate targetability and therapeutic efficacy. METHODS: Herein, we developed a proximal renal tubule-targeting gene delivery system based on alternative copolymer (PS) of sorbitol and polyethyleneimine (PEI), modified with vimentin-specific chitobionic acid (CA), producing PS-conjugated CA (PSC) for targeting toward vimentin-expressing cells in the kidneys. In vitro studies were used to determine cell viability, transfection efficiency, serum influence, and specific uptake in the human proximal renal tubular epithelial cell line (HK-2). Finally, the targeting efficiency of the prepared PSC gene carriers was checked in a murine model of Alport syndrome. RESULTS: Our results suggested that the prepared polyplex showed low cytotoxicity, enhanced transfection efficiency, specific uptake toward HK-2 cells, and excellent targeting efficiency toward the kidneys. CONCLUSION: Collectively, from these results it can be inferred that the PSC can be further evaluated as a potential gene carrier for the kidney-targeted delivery of therapeutic genes for treating diseases.


Subject(s)
Nanoparticles/chemistry , Plasmids/genetics , Vimentin/genetics , Animals , Cell Line , Cell Survival/drug effects , Disaccharides/chemistry , Fluorescent Dyes/chemistry , Humans , Kidney/metabolism , Kidney/pathology , Mice , Nanoparticles/toxicity , Plasmids/chemistry , Plasmids/metabolism , Polyethyleneimine/chemistry , Polymers/chemistry , Sugar Acids/chemistry , Transfection/methods , Vimentin/metabolism
10.
Org Lett ; 23(15): 6090-6093, 2021 08 06.
Article in English | MEDLINE | ID: mdl-34296882

ABSTRACT

An efficient and simple approach for stereoselective synthesis of ß-Kdo C-glycosides was described, which relies on easily available peracetylated anomeric acetate or anomeric 2-pyridyl sulfide to couple with carbonyl compounds via SmI2-mediated Reformatsky reactions. The utility of this methodology is exemplified by the streamlined synthesis of a practical ß-Kdo C-glycoside with an anomeric aminopropyl linker to conjugate with other biomolecules for further biological studies.


Subject(s)
Glycosides/chemical synthesis , Iodides/chemistry , Samarium/chemistry , Sugar Acids/chemical synthesis , Glycosides/chemistry , Molecular Structure , Stereoisomerism , Sugar Acids/chemistry
11.
Sci Rep ; 11(1): 4756, 2021 02 26.
Article in English | MEDLINE | ID: mdl-33637817

ABSTRACT

Pseudaminic acids present on the surface of pathogenic bacteria, including gut pathogens Campylobacter jejuni and Helicobacter pylori, are postulated to play influential roles in the etiology of associated infectious diseases through modulating flagella assembly and recognition of bacteria by the human immune system. Yet they are underexplored compared to other areas of glycoscience, in particular enzymes responsible for the glycosyltransfer of these sugars in bacteria are still to be unambiguously characterised. This can be largely attributed to a lack of access to nucleotide-activated pseudaminic acid glycosyl donors, such as CMP-Pse5Ac7Ac. Herein we reconstitute the biosynthesis of Pse5Ac7Ac in vitro using enzymes from C. jejuni (PseBCHGI) in the process optimising coupled turnover with PseBC using deuterium wash in experiments, and establishing a method for co-factor regeneration in PseH tunover. Furthermore we establish conditions for purification of a soluble CMP-Pse5Ac7Ac synthetase enzyme PseF from Aeromonas caviae and utilise it in combination with the C. jejuni enzymes to achieve practical preparative synthesis of CMP-Pse5Ac7Ac in vitro, facilitating future biological studies.


Subject(s)
Campylobacter jejuni/enzymology , Cytidine Monophosphate/chemistry , Sugar Acids/chemistry , Aeromonas caviae/enzymology , Biosynthetic Pathways
12.
FEBS J ; 288(16): 4905-4917, 2021 08.
Article in English | MEDLINE | ID: mdl-33630388

ABSTRACT

Recently, CxaP, a sugar acid substrate binding protein (SBP) from Advenella mimigardefordensis strain DPN7T , was identified as part of a novel sugar uptake strategy. In the present study, the protein was successfully crystallized. Although several SBP structures of tripartite ATP-independent periplasmic transporters have already been solved, this is the first structure of an SBP accepting multiple sugar acid ligands. Protein crystals were obtained with bound d-xylonic acid, d-fuconic acid d-galactonic and d-gluconic acid, respectively. The protein shows the typical structure of an SBP of a tripartite ATP-independent periplasmic transporter consisting of two domains linked by a hinge and spanned by a long α-helix. By analysis of the structure, the substrate binding site of the protein was identified. The carboxylic group of the sugar acids interacts with Arg175, whereas the coordination of the hydroxylic groups at positions C2 and C3 is most probably realized by Arg154 and Asn151. Furthermore, it was observed that 2-keto-3-deoxy-d-gluconic acid is bound in protein crystals that were crystallized without the addition of any ligand, indicating that this molecule is prebound to the protein and is displaced by the other ligands if they are available. DATABASE: Structural data of CxaP complexes are available in the worldwide Protein Data Bank (https://www.rcsb.org) under the accession codes 7BBR (2-keto-3-deoxy-d-gluconic acid), 7BCR (d-galactonic acid), 7BCN (d-xylonic acid), 7BCO (d-fuconic acid) and 7BCP (d-gluconic acid).


Subject(s)
Alcaligenaceae/chemistry , Bacterial Proteins/chemistry , Membrane Transport Proteins/chemistry , Sugar Acids/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Crystallography, X-Ray , Membrane Transport Proteins/metabolism , Models, Molecular , Sugar Acids/metabolism
13.
mBio ; 12(1)2021 01 19.
Article in English | MEDLINE | ID: mdl-33468699

ABSTRACT

Surface expression of the common vertebrate sialic acid (Sia) N-acetylneuraminic acid (Neu5Ac) by commensal and pathogenic microbes appears structurally to represent "molecular mimicry" of host sialoglycans, facilitating multiple mechanisms of host immune evasion. In contrast, ketodeoxynonulosonic acid (Kdn) is a more ancestral Sia also present in prokaryotic glycoconjugates that are structurally quite distinct from vertebrate sialoglycans. We detected human antibodies against Kdn-terminated glycans, and sialoglycan microarray studies found these anti-Kdn antibodies to be directed against Kdn-sialoglycans structurally similar to those on human cell surface Neu5Ac-sialoglycans. Anti-Kdn-glycan antibodies appear during infancy in a pattern similar to those generated following incorporation of the nonhuman Sia N-glycolylneuraminic acid (Neu5Gc) onto the surface of nontypeable Haemophilus influenzae (NTHi), a human commensal and opportunistic pathogen. NTHi grown in the presence of free Kdn took up and incorporated the Sia into its lipooligosaccharide (LOS). Surface display of the Kdn within NTHi LOS blunted several virulence attributes of the pathogen, including Neu5Ac-mediated resistance to complement and whole blood killing, complement C3 deposition, IgM binding, and engagement of Siglec-9. Upper airway administration of Kdn reduced NTHi infection in human-like Cmah null (Neu5Gc-deficient) mice that express a Neu5Ac-rich sialome. We propose a mechanism for the induction of anti-Kdn antibodies in humans, suggesting that Kdn could be a natural and/or therapeutic "Trojan horse" that impairs colonization and virulence phenotypes of free Neu5Ac-assimilating human pathogens.IMPORTANCE All cells in vertebrates are coated with a dense array of glycans often capped with sugars called sialic acids. Sialic acids have many functions, including serving as a signal for recognition of "self" cells by the immune system, thereby guiding an appropriate immune response against foreign "nonself" and/or damaged cells. Several pathogenic bacteria have evolved mechanisms to cloak themselves with sialic acids and evade immune responses. Here we explore a type of sialic acid called "Kdn" (ketodeoxynonulosonic acid) that has not received much attention in the past and compare and contrast how it interacts with the immune system. Our results show potential for the use of Kdn as a natural intervention against pathogenic bacteria that take up and coat themselves with external sialic acid from the environment.


Subject(s)
Antigens, CD/immunology , Haemophilus Infections/immunology , Haemophilus influenzae/immunology , Host-Pathogen Interactions/immunology , N-Acetylneuraminic Acid/chemistry , Sialic Acid Binding Immunoglobulin-like Lectins/immunology , Sialic Acids/immunology , Animals , Antibodies/chemistry , Antibodies/metabolism , Antigens, CD/metabolism , Biological Transport , Complement C3/immunology , Complement C3/metabolism , Female , Glycoconjugates/chemistry , Glycoconjugates/immunology , Haemophilus Infections/genetics , Haemophilus Infections/microbiology , Haemophilus influenzae/chemistry , Host-Pathogen Interactions/genetics , Humans , Immunoglobulin M/immunology , Immunoglobulin M/metabolism , Mice , Mice, Inbred C57BL , Molecular Mimicry/genetics , Molecular Mimicry/immunology , N-Acetylneuraminic Acid/immunology , Protein Binding , Sialic Acid Binding Immunoglobulin-like Lectins/metabolism , Sialic Acids/chemistry , Sugar Acids/chemistry , Sugar Acids/immunology
14.
Glycobiology ; 31(3): 288-306, 2021 04 01.
Article in English | MEDLINE | ID: mdl-32886756

ABSTRACT

Some bacterial flagellins are O-glycosylated on surface-exposed serine/threonine residues with nonulosonic acids such as pseudaminic acid, legionaminic acid and their derivatives by flagellin nonulosonic acid glycosyltransferases, also called motility-associated factors (Maf). We report here two new glycosidic linkages previously unknown in any organism, serine/threonine-O-linked N-acetylneuraminic acid (Ser/Thr-O-Neu5Ac) and serine/threonine-O-linked 3-deoxy-D-manno-octulosonic acid or keto-deoxyoctulosonate (Ser/Thr-O-KDO), both catalyzed by Geobacillus kaustophilus Maf and Clostridium botulinum Maf. We identified these novel glycosidic linkages in recombinant G. kaustophilus and C. botulinum flagellins that were coexpressed with their cognate recombinant Maf protein in Escherichia coli strains producing the appropriate nucleotide sugar glycosyl donor. Our finding that both G. kaustophilus Maf (putative flagellin sialyltransferase) and C. botulinum Maf (putative flagellin legionaminic acid transferase) catalyzed Neu5Ac and KDO transfer on to flagellin indicates that Maf glycosyltransferases display donor substrate promiscuity. Maf glycosyltransferases have the potential to radically expand the scope of neoglycopeptide synthesis and posttranslational protein engineering.


Subject(s)
Flagellin/metabolism , Glycosyltransferases/metabolism , N-Acetylneuraminic Acid/metabolism , Serine/metabolism , Sugar Acids/metabolism , Threonine/metabolism , Glycosylation , N-Acetylneuraminic Acid/chemistry , Serine/chemistry , Sugar Acids/chemistry , Threonine/chemistry
15.
Trends Microbiol ; 29(2): 142-157, 2021 02.
Article in English | MEDLINE | ID: mdl-32950378

ABSTRACT

Nonulosonic acids (NulOs) are a diverse family of 9-carbon α-keto acid sugars that are involved in a wide range of functions across all branches of life. The family of NulOs includes the sialic acids as well as the prokaryote-specific NulOs. Select bacteria biosynthesize the sialic acid N-acetylneuraminic acid (Neu5Ac), and the ability to produce this sugar and its subsequent incorporation into cell-surface structures is implicated in a variety of bacteria-host interactions. Furthermore, scavenging of sialic acid from the environment for energy has been characterized across a diverse group of bacteria, mainly human commensals and pathogens. In addition to sialic acid, bacteria have the ability to biosynthesize prokaryote-specific NulOs, of which there are several known isomers characterized. These prokaryotic NulOs are similar in structure to Neu5Ac but little is known regarding their role in bacterial physiology. Here, we discuss the diversity in structure, the biosynthesis pathways, and the functions of bacteria-specific NulOs. These carbohydrates are phylogenetically widespread among bacteria, with numerous structurally unique modifications recognized. Despite the diversity in structure, the NulOs are involved in similar functions such as motility, biofilm formation, host colonization, and immune evasion.


Subject(s)
Bacteria/metabolism , Sugar Acids/chemistry , Sugar Acids/metabolism , Bacteria/classification , Bacteria/genetics , Biosynthetic Pathways , Humans , N-Acetylneuraminic Acid/biosynthesis , N-Acetylneuraminic Acid/chemistry , Phylogeny
16.
J Am Chem Soc ; 142(46): 19446-19450, 2020 11 18.
Article in English | MEDLINE | ID: mdl-33166120

ABSTRACT

Pseudaminic acid (Pse), a unique carbohydrate in surface-associated glycans of pathogenic bacteria, has pivotal roles in virulence. Owing to its significant antigenicity and absence in mammals, Pse is considered an attractive target for vaccination or antibody-based therapies against bacterial infections. However, a specific and universal probe for Pse, which could also be used in immunotherapy, has not been reported. In a prior study, we used a tail spike protein from a bacteriophage (ΦAB6TSP) that digests Pse-containing exopolysaccharide (EPS) from Acinetobacter baumannii strain 54149 (Ab-54149) to form a glycoconjugate for preparing anti-Ab-54149 EPS serum. We report here that a catalytically inactive ΦAB6TSP (I-ΦAB6TSP) retains binding ability toward Pse. In addition, an I-ΦAB6TSP-DyLight-650 conjugate (Dy-I-ΦAB6TSP) was more sensitive in detecting Ab-54149 than an antibody purified from anti- Ab-54149 EPS serum. Dy-I-ΦAB6TSP also cross-reacted with other pathogenic bacteria containing Pse on their surface polysaccharides (e.g., Helicobacter pylori and Enterobacter cloacae), revealing it to be a promising probe for detecting Pse across bacterial species. We also developed a detection method that employs I-ΦAB6TSP immobilized on microtiter plate. These results suggested that the anti-Ab-54149 EPS serum would exhibit cross-reactivity to Pse on other organisms. When this was tested, this serum facilitated complement-mediated killing of H. pylori and E. cloacae, indicating its potential as a cross-species antibacterial agent. This work opens new avenues for diagnosis and treatment of multidrug resistant (MDR) bacterial infections.


Subject(s)
Anti-Bacterial Agents/chemistry , Bacterial Infections/therapy , Bacteriophages/chemistry , Sugar Acids/chemistry , Viral Tail Proteins/chemistry , Acinetobacter baumannii/chemistry , Anti-Bacterial Agents/pharmacology , Antibodies/chemistry , Drug Resistance, Multiple, Bacterial , Enterobacter cloacae/virology , Glycoconjugates/chemistry , Glycoside Hydrolases , Helicobacter pylori/virology , Polysaccharides/chemistry , Serum/chemistry , Sugar Acids/metabolism , Sugar Acids/therapeutic use , Viral Tail Proteins/metabolism
17.
Glycoconj J ; 37(6): 745-753, 2020 12.
Article in English | MEDLINE | ID: mdl-32980954

ABSTRACT

2-keto-3-deoxy-D-glycero-D-galacto-nononic acid (KDN) is a minor component of sialic acids detected in vertebrates, such as human cancer cells, rat liver, and fish tissues. Although the enzyme activity of KDN-cleaving sialidase (KDN-sialidase) has been detected in rainbow trout, the gene responsible for its expression has not been identified in vertebrates. We evaluated sialidases in human and various fish for their KDN-cleaving activity using an artificial substrate, methylumbelliferyl-KDN (MU-KDN). Four of the human sialidases tested (NEU1, NEU2, NEU3, and NEU4) did not hydrolyze MU-KDN. Although most fish Neu1s showed negligible KDN-sialidase activity, two Neu1b sialidases from Oreochromis niloticus and Astyanax mexicanus, a paralog of Neu1, exhibited a potent KDN-sialidase activity. Further, O. niloticus and Oryzias latipes Neu3a exhibited a drastically high KDN-sialidase activity, while Danio rerio Neu3.1 showed moderate activities and other Neu3 proteins exhibited little activity. All the Neu4 sialidases tested in fish cleaved KDN and Neu5Ac from MU-KDN and MU-Neu5Ac, respectively, with equivalent potential. To our knowledge, this is the first report to identify KDN-sialidase genes in vertebrates and we believe that KDN-sialidase activity could be conserved among fish Neu4s.


Subject(s)
Neuraminidase/genetics , Sialic Acids/metabolism , Sugar Acids/metabolism , Animals , Characidae/genetics , Cichlids/genetics , Cloning, Molecular , Humans , Hydrolysis , Neuraminidase/chemistry , Substrate Specificity/genetics , Sugar Acids/chemistry , Zebrafish/genetics
18.
Sci Rep ; 10(1): 11995, 2020 07 20.
Article in English | MEDLINE | ID: mdl-32686701

ABSTRACT

Nonulosonic acid (NulO) biosynthesis in bacteria is directed by nab gene clusters that can lead to neuraminic, legionaminic or pseudaminic acids. Analysis of the gene content from a set mainly composed of Aliivibrio salmonicida and Moritella viscosa strains reveals the existence of several unique nab clusters, for which the NulO products were predicted. This prediction method can be used to guide tandem mass spectrometry studies in order to verify the products of previously undescribed nab clusters and identify new members of the NulOs family.


Subject(s)
Biosynthetic Pathways/genetics , Moritella/genetics , Multigene Family , Sequence Analysis, DNA , Sugar Acids/metabolism , Vibrionaceae/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Catalytic Domain , Evolution, Molecular , Phylogeny , Sugar Acids/chemistry
19.
Org Biomol Chem ; 18(31): 6155-6161, 2020 08 12.
Article in English | MEDLINE | ID: mdl-32716466

ABSTRACT

The aminated mimetics of 2-keto-3-deoxy-sugar acids such as the anti-influenza clinical drugs oseltamivir (Tamiflu) and zanamivir (Relenza) are important bioactive molecules. Development of synthetic methodologies for accessing such compound collections is highly desirable. Herein, we describe a simple, catalyst-free glycal diazidation protocol enabled by visible light-driven conditions. This new method requires neither acid promoters nor transition-metal catalysts and takes place at ambient temperature within 1-2 hours. Notably, the desired transformations could be promoted by thermal conditions as well, albeit with lower efficacy compared to the light-induced conditions. Different sugar acid-derived glycal templates have been converted into a range of 2,3-diazido carbohydrate analogs by harnessing this mild and scalable approach, leading to the discovery of new antiviral agents.


Subject(s)
Antiviral Agents/pharmacology , Azides/pharmacology , Carbohydrates/pharmacology , Hot Temperature , Light , Rhinovirus/drug effects , Sugar Acids/pharmacology , Zika Virus/drug effects , Antiviral Agents/chemical synthesis , Antiviral Agents/chemistry , Azides/chemical synthesis , Azides/chemistry , Carbohydrate Conformation , Carbohydrates/chemical synthesis , Carbohydrates/chemistry , Microbial Sensitivity Tests , Sugar Acids/chemistry
20.
Org Lett ; 22(15): 5783-5788, 2020 08 07.
Article in English | MEDLINE | ID: mdl-32663012

ABSTRACT

3-Deoxy-d-manno-oct-2-ulosonic acid (Kdo) biosynthetic pathway is a promising target in antibacterial drug discovery. Herein, we report the total synthesis of 6-amino-2,6-dideoxy-α-Kdo in 15 steps from d-mannose as a potential inhibitor of Kdo-processing enzymes. Key steps of the synthetic sequence involve a Horner-Wadsworth-Emmons reaction for the two-carbon chain homologation followed by either a 6-exo-trig Pd-catalyzed reductive cyclization or a tandem Staudinger/aza-Wittig reaction with concomitant α-iminoester reduction, enabling the α-stereoselective formation of the Kdo-like six-membered azacyclic ring.


Subject(s)
Mannose/chemistry , Sugar Acids/chemical synthesis , Glycosides/chemical synthesis , Glycosylation , Lipopolysaccharides/chemistry , Molecular Structure , Sugar Acids/chemistry
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