A deterministic transmission model for analytics-driven optimization of COVID-19 post-pandemic vaccination and quarantine strategies.

This study developed a deterministic transmission model for the coronavirus disease of 2019 (COVID-19), considering various factors such as vaccination, awareness, quarantine, and treatment resource limitations for infected individuals in quarantine facilities. The proposed model comprised five compartments: susceptible, vaccinated, quarantined, infected, and recovery. It also considered awareness and limited resources by using a saturated function. Dynamic analyses, including equilibrium points, control reproduction numbers, and bifurcation analyses, were conducted in this research, employing analytics to derive insights. Our results indicated the possibility of an endemic equilibrium even if the reproduction number for control was less than one. Using incidence data from West Java, Indonesia, we estimated our model parameter values to calibrate them with the real situation in the field. Elasticity analysis highlighted the crucial role of contact restrictions in reducing the spread of COVID-19, especially when combined with community awareness. This emphasized the analytics-driven nature of our approach. We transformed our model into an optimal control framework due to budget constraints. Leveraging Pontriagin's maximum principle, we meticulously formulated and solved our optimal control problem using the forward-backward sweep method. Our experiments underscored the pivotal role of vaccination in infection containment. Vaccination effectively reduces the risk of infection among vaccinated individuals, leading to a lower overall infection rate. However, combining vaccination and quarantine measures yields even more promising results than vaccination alone. A second crucial finding emphasized the need for early intervention during outbreaks rather than delayed responses. Early interventions significantly reduce the number of preventable infections, underscoring their importance.

Understanding HIV/AIDS dynamics: insights from CD4+T cells, antiretroviral treatment, and country-specific analysis.

In this article, we present a mathematical model for human immunodeficiency virus (HIV)/Acquired immune deficiency syndrome (AIDS), taking into account the number of CD4+T cells and antiretroviral treatment. This model is developed based on the susceptible, infected, treated, AIDS (SITA) framework, wherein the infected and treated compartments are divided based on the number of CD4+T cells. Additionally, we consider the possibility of treatment failure, which can exacerbate the condition of the treated individual. Initially, we analyze a simplified HIV/AIDS model without differentiation between the infected and treated classes. Our findings reveal that the global stability of the HIV/AIDS-free equilibrium point is contingent upon the basic reproduction number being less than one. Furthermore, a bifurcation analysis demonstrates that our simplified model consistently exhibits a transcritical bifurcation at a reproduction number equal to one. In the complete model, we elucidate how the control reproduction number determines the stability of the HIV/AIDS-free equilibrium point. To align our model with the empirical data, we estimate its parameters using prevalence data from the top four countries affected by HIV/AIDS, namely, Eswatini, Lesotho, Botswana, and South Africa. We employ numerical simulations and conduct elasticity and sensitivity analyses to examine how our model parameters influence the control reproduction number and the dynamics of each model compartment. Our findings reveal that each country displays distinct sensitivities to the model parameters, implying the need for tailored strategies depending on the target country. Autonomous simulations highlight the potential of case detection and condom use in reducing HIV/AIDS prevalence. Furthermore, we identify that the quality of condoms plays a crucial role: with higher quality condoms, a smaller proportion of infected individuals need to use them for the potential eradication of HIV/AIDS from the population. In our optimal control simulations, we assess population behavior when control interventions are treated as time-dependent variables. Our analysis demonstrates that a combination of condom use and case detection, as time-dependent variables, can significantly curtail the spread of HIV while maintaining an optimal cost of intervention. Moreover, our cost-effectiveness analysis indicates that the condom use intervention alone emerges as the most cost-effective strategy, followed by a combination of case detection and condom use, and finally, case detection as a standalone strategy.

Optimal control of pneumonia transmission model with seasonal factor: Learning from Jakarta incidence data.

Pneumonia is a dangerous disease that can lead to death without proper treatment. It is caused by a bacterial infection that leads to the inflammation of the air sacs in human lungs and potentially results in a lung abscess if not properly untreated. Here in this article we introduced a novel mathematical model to investigate the potential impact of Pneumonia treatments on disease transmission dynamics. The model is then validated against data from Jakarta City, Indonesia. In the model, the infection stage in infected individuals is categorized into three stages: the Exposed, Congestion and Hepatization, and the Resolution stage. Mathematical analysis shows that the disease-free equilibrium is always locally asymptotically stable when the basic reproduction number is less than one and unstable when larger than one. The endemic equilibrium only exists when the basic reproduction number is larger than one. Our proposed model always exhibits a forward bifurcation when the basic reproduction number is equal to one, which indicates local stability of the endemic equilibrium when the basic reproduction number is larger than one but close to one. A global sensitivity analysis shows that the infection parameter is the most influential parameter in determining the size of the total infected individual in the endemic equilibrium point. Furthermore, we also found that the hospitalization and the acceleration of the treatment duration can be used to control the level of endemic size. An optimal control problem was constructed from the earlier model and analyzed using the Pontryagin Maximum Principle. We find that the implementation of treatment in the earlier stage of infected individuals is needed to avoid a more significant outbreak of Pneumonia in a long-term intervention.

Predicting potential areas at risk of the Dengue Hemorrhagic Fever in Jakarta, Indonesia-analyzing the accuracy of predictive hot spot analysis in the absence of small geographical area data.

Dengue Hemorrhagic Fever (DHF), a more severe form of dengue, is one of the most rapidly spreading mosquito-borne diseases in the world. This study is motivated by the rising DHF incidence in Jakarta, the capital city of Indonesia. We mainly utilized hot spot analysis, which employs spatial statistics to find at-risk areas for DHF outbreaks in Jakarta's five municipalities. However, producing informative results from hot spot analysis requires a complete set of data on each of Jakarta's 42 districts, which is not available. We thus propose the idea of using small area estimation (SAE) and machine learning to make up for the lack of data. To evaluate whether this proposed method is effective, we compare the hot spot results from the estimation with the actual data of each district. The results show that the estimated hot spot map is similar to the hot spot map from the actual data. This implies that it is possible to find potential at-risk areas of dengue fever without a complete dataset in every small geographic area. We expect that this research can increase the performance of DHF control measures at the district level, even in the absence of small area data.

Assessing the Impact of Relapse, Reinfection and Recrudescence on Malaria Eradication Policy: A Bifurcation and Optimal Control Analysis.

In the present study, we propose and analyze an epidemic mathematical model for malaria dynamics, considering multiple recurrent phenomena: relapse, reinfection, and recrudescence. A limitation in hospital bed capacity, which can affect the treatment rate, is modeled using a saturated treatment function. The qualitative behavior of the model, covering the existence and stability criteria of the endemic equilibrium, is investigated rigorously. The concept of the basic reproduction number of the proposed model is obtained using the concept of the next-generation matrix. We find that the malaria-free equilibrium point is locally asymptotically stable if the basic reproduction number is less than one and unstable if it is larger than one. Our observation on the malaria-endemic equilibrium of the proposed model shows possible multiple endemic equilibria when the basic reproduction number is larger or smaller than one. Hence, we conclude that a condition of a basic reproduction number less than one is not sufficient to guarantee the extinction of malaria from the population. To test our model in a real-life situation, we fit our model parameters using the monthly incidence data from districts in Central Sumba, Indonesia called Wee Luri, which were collected from the Wee Luri Health Center. Using the first twenty months' data from Wee Luri district, we show that our model can fit the data with a confidence interval of 95%. Both analytical and numerical experiments show that a limitation in hospital bed capacity and reinfection can trigger a more substantial possibility of the appearance of backward bifurcation. On the other hand, we find that an increase in relapse can reduce the chance of the appearance of backward bifurcation. A non-trivial result appears in that a higher probability of recrudescence (treatment failure) does not always result in the appearance of backward bifurcation. From the global sensitivity analysis using a combination of Latin hypercube sampling and partial rank correlation coefficient, we found that the initial infection rate in humans and the mosquito infection rate are the most influential parameters in determining the increase in total new human infections. We expand our model as an optimal control problem by including three types of malaria interventions, namely the use of bed net, hospitalization, and fumigation as a time-dependent variable. Using the Pontryagin maximum principle, we characterize our optimal control problem. Results from our cost-effectiveness analysis suggest that hospitalization only is the most cost-effective strategy required to control malaria disease.

An Optimal Control Model to Understand the Potential Impact of the New Vaccine and Transmission-Blocking Drugs for Malaria: A Case Study in Papua and West Papua, Indonesia.

Malaria is one of the major causes of a high death rate due to infectious diseases every year. Despite attempts to eradicate the disease, results have not been very successful. New vaccines and other treatments are being constantly developed to seek optimal ways to prevent malaria outbreaks. In this article, we formulate and analyze an optimal control model of malaria incorporating the new pre-erythrocytic vaccine and transmission-blocking treatment. Sufficient conditions to guarantee local stability of the malaria-free equilibrium were derived based on the controlled reproduction number condition. Using the non-linear least square fitting method, we fitted the incidence data from the province of Papua and West Papua in Indonesia to estimate the model parameter values. The optimal control characterization and optimality conditions were derived by applying the Pontryagin Maximum Principle, and numerical simulations were also presented. Simulation results show that both the pre-erythrocytic vaccine and transmission-blocking treatment significantly reduce the spread of malaria. Accordingly, a high doses of pre-erythrocytic vaccine is needed if the number of infected individuals is relatively small, while transmission blocking is required if the number of infected individuals is relatively large. These results suggest that a large-scale implementation of both strategies is vital as the world continues with the effort to eradicate malaria, especially in endemic regions across the globe.

Dynamical Analysis on a Malaria Model with Relapse Preventive Treatment and Saturated Fumigation.

Malaria has produced health issues in many parts of the world. One of the reason is due to the recurrence phenomenon, which can happen years after the main infection has appeared in the human body. Furthermore, the fumigation intervention, which has become a major worry in several regions of the world, has yielded unsatisfactory results, as seen by the high number of cases reported each year in several African countries. We present a novel mathematical model that integrates tafenoquine treatments to prevent relapse in the human population and saturation fumigation to control mosquito populations in this study. The endemic threshold, also known as the basic reproduction number, is calculated analytically, as is the existence and local stability of the equilibrium points. Through careful investigation, we discovered that the malaria-free equilibrium is locally asymptotically stable if the basic reproduction number is less than one and unstable if it is greater than one. According to the sensitivity analysis, the utilization of tafenoquine treatment is inversely proportional to the basic reproduction number. Although our model never exhibits a backward bifurcation at the basic reproduction number equal to one, we have demonstrated that it is possible; when the basic reproduction number is greater than one, two stable malaria-endemic equilibrium can exist. As a result, when the basic reproduction number is more than one, the final state will be determined by the initial condition of the population. As a result, enormous temporal fumigation can shift the stability of our malaria model from a big endemic size to a smaller endemic size, which is more advantageous in terms of the malaria prevention strategy. Despite the fact that this is not a case study, the numerical results presented in this article are intended to support any theoretical analysis of current malaria eradication tactics in the field.

Optimal control problem arising from COVID-19 transmission model with rapid-test.

The world health organization (WHO) has declared the Coronavirus (COVID-19) a pandemic. In light of this ongoing global issue, different health and safety measure has been recommended by the WHO to ensure the proactive, comprehensive, and coordinated steps to bring back the whole world into a normal situation. This is an infectious disease and can be modeled as a system of non-linear differential equations with reaction rates which consider the rapid-test as the intervention program. Therefore, we have developed the biologically feasible region, i.e., positively invariant for the model and boundedness solution of the system. Our system becomes well-posed mathematically and epidemiologically for sensitive analysis and our analytical result shows an occurrence of a forward bifurcation when the basic reproduction number is equal to unity. Further, the local sensitivities for each model state concerning the model parameters are computed using three different techniques: non-normalizations, half-normalizations, and full normalizations. The numerical approximations have been measured by using System Biology Toolbox (SBedit) with MATLAB, and the model is analyzed graphically. Our result on the sensitivity analysis shows a potential of rapid-test for the eradication program of COVID-19. Therefore, we continue our result by reconstructing our model as an optimal control problem. Our numerical simulation shows a time-dependent rapid test intervention succeeded in suppressing the spread of COVID-19 effectively with a low cost of the intervention. Finally, we forecast three COVID-19 incidence data from China, Italy, and Pakistan. Our result suggests that Italy already shows a decreasing trend of cases, while Pakistan is getting closer to the peak of COVID-19.

Analysis of yellow fever prevention strategy from the perspective of mathematical model and cost-effectiveness analysis.

We developed a new mathematical model for yellow fever under three types of intervention strategies: vaccination, hospitalization, and fumigation. Additionally, the side effects of the yellow fever vaccine were also considered in our model. To analyze the best intervention strategies, we constructed our model as an optimal control model. The stability of the equilibrium points and basic reproduction number of the model are presented. Our model indicates that when yellow fever becomes endemic or disappears from the population, it depends on the value of the basic reproduction number, whether it larger or smaller than one. Using the Pontryagin maximum principle, we characterized our optimal control problem. From numerical experiments, we show that the optimal levels of each control must be justified, depending on the strategies chosen to optimally control the spread of yellow fever.

Reassessment of contact restrictions and testing campaigns against COVID-19 via spatio-temporal modeling.

Since the earliest outbreak of COVID-19, the disease continues to obstruct life normalcy in many parts of the world. The present work proposes a mathematical framework to improve non-pharmaceutical interventions during the new normal before vaccination settles herd immunity. The considered approach is built from the viewpoint of decision makers in developing countries where resources to tackle the disease from both a medical and an economic perspective are scarce. Spatial auto-correlation analysis via global Moran's index and Moran's scatter is presented to help modulate decisions on hierarchical-based priority for healthcare capacity and interventions (including possible vaccination), finding a route for the corresponding deployment as well as landmarks for appropriate border controls. These clustering tools are applied to sample data from Sri Lanka to classify the 26 Regional Director of Health Services (RDHS) divisions into four clusters by introducing convenient classification criteria. A metapopulation model is then used to evaluate the intra- and inter-cluster contact restrictions as well as testing campaigns under the absence of confounding factors. Furthermore, we investigate the role of the basic reproduction number to determine the long-term trend of the regressing solution around disease-free and endemic equilibria. This includes an analytical bifurcation study around the basic reproduction number using Brouwer Degree Theory and asymptotic expansions as well as related numerical investigations based on path-following techniques. We also introduce the notion of average policy effect to assess the effectivity of contact restrictions and testing campaigns based on the proposed model's transient behavior within a fixed time window of interest.

Interrelationship between daily COVID-19 cases and average temperature as well as relative humidity in Germany.

COVID-19 pandemic continues to obstruct social lives and the world economy other than questioning the healthcare capacity of many countries. Weather components recently came to notice as the northern hemisphere was hit by escalated incidence in winter. This study investigated the association between COVID-19 cases and two components, average temperature and relative humidity, in the 16 states of Germany. Three main approaches were carried out in this study, namely temporal correlation, spatial auto-correlation, and clustering-integrated panel regression. It is claimed that the daily COVID-19 cases correlate negatively with the average temperature and positively with the average relative humidity. To extract the spatial auto-correlation, both global Moran's [Formula: see text] and global Geary's [Formula: see text] were used whereby no significant difference in the results was observed. It is evident that randomness overwhelms the spatial pattern in all the states for most of the observations, except in recent observations where either local clusters or dispersion occurred. This is further supported by Moran's scatter plot, where states' dynamics to and fro cold and hot spots are identified, rendering a traveling-related early warning system. A random-effects model was used in the sense of case-weather regression including incidence clustering. Our task is to perceive which ranges of the incidence that are well predicted by the existing weather components rather than seeing which ranges of the weather components predicting the incidence. The proposed clustering-integrated model associated with optimal barriers articulates the data well whereby weather components outperform lag incidence cases in the prediction. Practical implications based on marginal effects follow posterior to model diagnostics.

Optimal control problem and backward bifurcation on malaria transmission with vector bias.

This article aims to apply a mathematical model to investigate the spread of malaria by considering vector bias, saturated treatment, and an optimal control approach. A mathematical analysis of the equilibrium points and an investigation of the basic reproduction number show that if the basic reproduction number ( R 0 ) is less than one, the disease-free equilibrium is locally asymptotically stable. Furthermore, the center-manifold theory is applied to analyze the stability of the endemic equilibrium when R 0 = 1 . We find that our model performs a backward bifurcation phenomenon when the saturated treatment or vector bias parameter is larger than the threshold. Interestingly, we found that uncontrolled fumigation could increase the chance of the appearance of backward bifurcation. From the sensitivity analysis of R 0 , we find that the fumigation and vector bias are the most influential parameters for determining the magnitude of R 0 . Using the Pontryagin maximum principle, the optimal control problem is constructed by treating fumigation and medical treatment parameters as the time-dependent variable. Our numerical results on the optimal control simulation suggest that time-dependent fumigation and medical treatment could suppress the spread of malaria more efficiently at minimum cost.

Impact of early detection and vaccination strategy in COVID-19 eradication program in Jakarta, Indonesia.

OBJECTIVE: Several essential factors have played a crucial role in the spreading mechanism of COVID-19 (Coronavirus disease 2019) in the human population. These factors include undetected cases, asymptomatic cases, and several non-pharmaceutical interventions. Because of the rapid spread of COVID-19 worldwide, understanding the significance of these factors is crucial in determining whether COVID-19 will be eradicated or persist in the population. Hence, in this study, we establish a new mathematical model to predict the spread of COVID-19 considering mentioned factors. RESULTS: Infection detection and vaccination have the potential to eradicate COVID-19 from Jakarta. From the sensitivity analysis, we find that rapid testing is crucial in reducing the basic reproduction number when COVID-19 is endemic in the population rather than contact trace. Furthermore, our results indicate that a vaccination strategy has the potential to relax social distancing rules, while maintaining the basic reproduction number at the minimum possible, and also eradicate COVID-19 from the population with a higher vaccination rate. In conclusion, our model proposed a mathematical model that can be used by Jakarta's government to relax social distancing policy by relying on future COVID-19 vaccine potential.

Optimal control on COVID-19 eradication program in Indonesia under the effect of community awareness.

A total of more than 27 million confirmed cases of the novel coronavirus outbreak, also known as COVID-19, have been reported as of September 7, 2020. To reduce its transmission, a number of strategies have been proposed. In this study, mathematical models with nonpharmaceutical and pharmaceutical interventions were formulated and analyzed. The first model was formulated without the inclusion of community awareness. The analysis focused on investigating the mathematical behavior of the model, which can explain how medical masks, medical treatment, and rapid testing can be used to suppress the spread of COVID-19. In the second model, community awareness was taken into account, and all the interventions considered were represented as time-dependent parameters. Using the center-manifold theorem, we showed that both models exhibit forward bifurcation. The infection parameters were obtained by fitting the model to COVID-19 incidence data from three provinces in Indonesia, namely, Jakarta, West Java, and East Java. Furthermore, a global sensitivity analysis was performed to identify the most influential parameters on the number of new infections and the basic reproduction number. We found that the use of medical masks has the greatest effect in determining the number of new infections. The optimal control problem from the second model was characterized using the well-known Pontryagin's maximum principle and solved numerically. The results of a cost-effectiveness analysis showed that community awareness plays a crucial role in determining the success of COVID-19 eradication programs.

Analyzing the impact of the media campaign and rapid testing for COVID-19 as an optimal control problem in East Java, Indonesia.

Without any vaccine or medical intervention to cure the infected individual from COVID-19, the non-pharmaceutical intervention become the most reasonable intervention against the spread of COVID-19. In this paper, we proposed a deterministic model governed by a system of nonlinear differential equations which consider the intervention of media campaign to increase human awareness, and rapid testing to track the undetected cases in the field. Analysis of the autonomous model shows the existence of transcritical bifurcation at a basic reproduction number equal to one. We estimate our parameter using the incidence data from East Java, Indonesia. Using these parameters, we analyze the sensitivity of the parameters in determining the size of the basic reproduction number. An optimal control problem which transforms media campaign and rapid testing as a time-dependent control was conducted also in this article. Cost-effectiveness analysis using the Infection averted ratio (IAR) and the Average cost-effectiveness ratio (ACER) conducted to analyze the best strategies to eradicate COVID-19 spread. We observe that the combination of the media campaign and rapid testing as time-dependent interventions reduces the number of an infected individual significantly and also minimizes the economic burden due to these strategies in East Java.

A mathematical study on the spread of COVID-19 considering social distancing and rapid assessment: The case of Jakarta, Indonesia.

The aim of this study is to investigate the effects of rapid testing and social distancing in controlling the spread of COVID-19, particularly in the city of Jakarta, Indonesia. We formulate a modified susceptible exposed infectious recovered compartmental model considering asymptomatic individuals. Rapid testing is intended to trace the existence of asymptomatic infected individuals among the population. This asymptomatic class is categorized into two subclasses: detected and undetected asymptomatic individuals. Furthermore, the model considers the limitations of medical resources to treat an infected individual in a hospital. The model shows two types of equilibrium point: COVID-19 free and COVID-19 endemic. The COVID-19-free equilibrium point is locally and asymptotically stable if the basic reproduction number ( R 0 ) is less than unity. In contrast, COVID-19-endemic equilibrium always exists when R 0 > 1 . The model can also show a backward bifurcation at R 0 = 1 whenever the treatment saturation parameter, which describes the hospital capacity, is larger than a specific threshold. To justify the model parameters, we use the incidence data from the city of Jakarta, Indonesia. The data pertain to infected individuals who self-isolate in their homes and visit the hospital for further treatment. Our numerical experiments indicate that strict social distancing has the potential to succeed in reducing and delaying the time of an outbreak. However, if the strict social distancing policy is relaxed, a massive rapid-test intervention should be conducted to avoid a large-scale outbreak in the future.

A Population Dynamics Model of Mosquito-Borne Disease Transmission, Focusing on Mosquitoes' Biased Distribution and Mosquito Repellent Use.

We present an improved mathematical model of population dynamics of mosquito-borne disease transmission. Our model considers the effect of mosquito repellent use and the mosquito's behavior or attraction to the infected human, which cause mosquitoes' biased distribution around the human population. Our analysis of the model clearly shows the existence of thresholds for mosquito repellent efficacy and its utilization rate in the human population with respect to the elimination of mosquito-borne diseases. Further, the results imply that the suppression of mosquito-borne diseases becomes more difficult when the mosquitoes' distribution is biased to a greater extent around the human population.

An optimal control problem arising from a dengue disease transmission model.

An optimal control problem for a host-vector Dengue transmission model is discussed here. In the model, treatments with mosquito repellent are given to adults and children and those who undergo treatment are classified in treated compartments. With this classification, the model consists of 11 dynamic equations. The basic reproductive ratio that represents the epidemic indicator is obtained from the largest eigenvalue of the next generation matrix. The optimal control problem is designed with four control parameters, namely the treatment rates for children and adult compartments, and the drop-out rates from both compartments. The cost functional accounts for the total number of the infected persons, the cost of the treatment, and the cost related to reducing the drop-out rates. Numerical results for the optimal controls and the related dynamics are shown for the case of epidemic prevention and outbreak reduction strategies.