The autism spectrum disorder risk gene NEXMIF over-synchronizes hippocampal CA1 network and alters neuronal coding.

Mutations in autism spectrum disorder (ASD) risk genes disrupt neural network dynamics that ultimately lead to abnormal behavior. To understand how ASD-risk genes influence neural circuit computation during behavior, we analyzed the hippocampal network by performing large-scale cellular calcium imaging from hundreds of individual CA1 neurons simultaneously in transgenic mice with total knockout of the X-linked ASD-risk gene NEXMIF (neurite extension and migration factor). As NEXMIF knockout in mice led to profound learning and memory deficits, we examined the CA1 network during voluntary locomotion, a fundamental component of spatial memory. We found that NEXMIF knockout does not alter the overall excitability of individual neurons but exaggerates movement-related neuronal responses. To quantify network functional connectivity changes, we applied closeness centrality analysis from graph theory to our large-scale calcium imaging datasets, in addition to using the conventional pairwise correlation analysis. Closeness centrality analysis considers both the number of connections and the connection strength between neurons within a network. We found that in wild-type mice the CA1 network desynchronizes during locomotion, consistent with increased network information coding during active behavior. Upon NEXMIF knockout, CA1 network is over-synchronized regardless of behavioral state and fails to desynchronize during locomotion, highlighting how perturbations in ASD-implicated genes create abnormal network synchronization that could contribute to ASD-related behaviors.

Multi-label classification of reduced-lead ECGs using an interpretable deep convolutional neural network.

Objective.We propose a model that can perform multi-label classification on 26 cardiac abnormalities from reduced lead Electrocardiograms (ECGs) and interpret the model.Approach.PhysioNet/computing in cardiology (CinC) challenge 2021 datasets are used to train the model. All recordings shorter than 20 s are preprocessed by normalizing, resampling, and zero-padding. The frequency domains of the recordings are obtained by applying fast Fourier transform. The time domain and frequency domain of the signals are fed into two separate deep convolutional neural networks. The outputs of these networks are then concatenated and passed through a fully connected layer that outputs the probabilities of 26 classes. Data imbalance is addressed by using a threshold of 0.13 to the sigmoid output. The 2-lead model is tested under noise contamination based on the quality of the signal and interpreted using SHapley Additive exPlanations (SHAP).Main results.The proposed method obtained a challenge score of 0.55, 0.51, 0.56, 0.55, and 0.56, ranking 2nd, 5th, 3rd, 3rd, and 3rd out of 39 officially ranked teams on 12-lead, 6-lead, 4-lead, 3-lead, and 2-lead hidden test datasets, respectively, in the PhysioNet/CinC challenge 2021. The model performs well under noise contamination with meanF1 scores of 0.53, 0.56 and 0.56 for the excellent, barely acceptable and unacceptable signals respectively. Analysis of the SHAP values of the 2-lead model verifies the performance of the model while providing insight into labeling inconsistencies and reasons for the poor performance of the model in some classes.Significance.We have proposed a model that can accurately identify 26 cardiac abnormalities using reduced lead ECGs that performs comparably with 12-lead ECGs and interpreted the model behavior. We demonstrate that the proposed model using only the limb leads performs with accuracy comparable to that using all 12 leads.

WaveCSP: a robust motor imagery classifier for consumer EEG devices.

There is an increasing demand for reliable motor imagery (MI) classification algorithms for applications in consumer level brain-computer interfacing (BCI). For the practical use, such algorithms must be robust to both device limitations and subject variability, which make MI classification a challenging task. This study proposes methods to study the effect of limitations including a limited number of electrodes, limited spatial distribution of electrodes, lower signal quality, subject variabilities and BCI literacy, on the performance of MI classification. To mitigate these limitations, we propose a machine learning approach, WaveCSP that uses 24 features extracted from EEG signals using wavelet transform and common spatial pattern (CSP) filtering techniques. The algorithm shows better performance in terms of subject variability compared to existing work. The application of WaveCSP to Physionet MI database shows more than 50% of the 109 subjects achieving accuracy higher than 64%. The data obtained from a commercial EEG headset using the same experimental protocol result in up to four out of five subjects who had prior BCI experience (out of a total of 25 subjects) performing with accuracy higher than 64%.

Detecting atrial fibrillation from short single lead ECGs using statistical and morphological features.

OBJECTIVE: Point of care ECG devices can improve the early detection of atrial fibrillation (AF). The efficiency of such devices depends on the capability of automatic AF detection against normal sinus rhythm and other arrhythmias from a short single lead ECG record in the presence of noise and artifacts. The objective of this study was to develop an algorithm that classifies a short single lead ECG record into 'Normal', 'AF', 'Other' and 'Noisy' classes, and identify the challenges in developing such algorithms and potential mitigation steps. APPROACH: Rule-based identification was used to detect lead inversion and records too noisy to be of immediate use. A set of statistical and morphological features describing the rhythm was then extracted, and support vector machine classifiers were used to classify records into three classes: 'Normal', 'AF' or 'Other'. The algorithm was trained and tested using 12 186 short single lead ECGs recorded on a point of care device made available via the Computing in Cardiology Challenge 2017. MAIN RESULTS: The algorithm achieved a sensitivity of 77.5%, a specificity of 97.9% and an accuracy of 96.1% in the detection of AF from a non-AF rhythm in a five-fold cross validation. It achieved F1 measures of 89%, 78% and 67% for 'Normal', 'AF' and 'Other' classes, respectively, when evaluated with a hidden test set. The overall challenge score was 78%. SIGNIFICANCE: Most existing algorithms can distinguish the AF rhythm from the normal sinus rhythm when ECG recordings are clean and are obtained with multi-lead systems, while their ability to discriminate against other arrhythmias and noise remains largely unknown. This study proposes an algorithm that classifies a short single lead ECG record from point of care devices into 'Normal', 'AF', 'Other' and 'Noisy' classes and discusses computational approaches to mitigate any unique challenges such as lead inversion, low amplitude signals, noise and artifacts.