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2.
Eur J Surg Oncol ; 46(9): 1683-1688, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-32220542

RESUMO

INTRODUCTION: Transverse colon cancer (TCC) is poorly studied, and TCC cases are often excluded from large prospective randomized trials because of their complexity and their potentially high complication rate. The best surgical approach for TCC has yet to be established. The aim of this large retrospective multicenter Italian series is to investigate the advantages and disadvantages of both hemicolectomy and transverse colectomy in order to identify the best surgical approach. MATERIALS AND METHODS: This was a retrospective cohort study of patients with mid-transverse colon cancer treated with a segmental colon resection or an extended hemicolectomy (right or left) between 2006 and 2016 in 28 high-volume (more than 70 procedures/year) Italian referral centers for colorectal surgery. RESULTS: The study included 1529 patients, 388 of whom underwent a segmental resection while 1141 underwent an extended resection. A higher number of complications has been reported in the segmental group than in the extended group (30.1% versus 23.6%; p 0.010). In 42 cases the main complication was the anastomotic leak (4.4% versus 2.2%; p 0.020). Recovery outcomes also showed statistical differences: time to first flatus (p 0.014), time to first mobilization (p 0.040), and overall hospital stay (p < 0.001) were significantly shorter in the extended group. Even if overall survival were similar between the groups (95.1% versus 97%; p 0.384), 3-year disease-free survival worsened after segmental resection (78.1% versus 86.2%; p 0.001). CONCLUSIONS: According to our results, an extended right colon resection for TCC seems to be surgically safer and more oncologically valid.


Assuntos
Fístula Anastomótica/epidemiologia , Colectomia/métodos , Colo Transverso/cirurgia , Neoplasias do Colo/cirurgia , Tempo de Internação/estatística & dados numéricos , Infecção da Ferida Cirúrgica/epidemiologia , Idoso , Idoso de 80 Anos ou mais , Colo Transverso/patologia , Neoplasias do Colo/patologia , Intervalo Livre de Doença , Feminino , Humanos , Itália/epidemiologia , Masculino , Pessoa de Meia-Idade , Estadiamento de Neoplasias , Complicações Pós-Operatórias/epidemiologia , Estudos Retrospectivos , Taxa de Sobrevida , Fatores de Tempo
4.
Clin Oncol (R Coll Radiol) ; 27(10): 547-60, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26282471

RESUMO

Hypoxia is a feature of most solid tumours and is associated with a poor prognosis. The hypoxic environment can reduce the efficacy of radiotherapy and some chemotherapeutics, and has been investigated extensively as a therapeutic target. The clinical use of hypoxia-targeting treatment will benefit from the development of a biomarker to assess tumour hypoxia. There are several possible techniques that measure either the level of oxygen or the tumour molecular response to hypoxia. The latter includes gene expression profiling, which measures the transcriptional response of a tumour to its hypoxic microenvironment. A systematic review identified 32 published hypoxia gene expression signatures. The methods used for their derivation varied, but are broadly classified as: (i) identifying genes with significantly higher or lower expression in cancer cells cultured under hypoxic versus normoxic conditions; (ii) using either previously characterised hypoxia-regulated genes/biomarkers to define hypoxic tumours and then identifying other genes that are over- or under-expressed in the hypoxic tumours. Both generated gene signatures useful in furthering our understanding of hypoxia biology. However, signatures derived using the second method seem to be superior in terms of providing prognostic information. Here we summarise all 32 published hypoxia signatures, discuss their commonalities and differences, and highlight their strengths and limitations. This review also highlights the importance of reproducibility and gene annotation, which must be accounted for to transfer signatures robustly for clinical application as biomarkers.


Assuntos
Biomarcadores Tumorais/metabolismo , Perfilação da Expressão Gênica/métodos , Neoplasias/genética , Transcriptoma/genética , Hipóxia Tumoral/genética , Humanos , Prognóstico
5.
Commun Agric Appl Biol Sci ; 78(2): 73-82, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-25145227

RESUMO

Microorganisms are natural contaminants of fresh produce and minimally processed products, and contamination arises from a number of sources, including the environment, postharvest handling and processing. Fresh-cut products are particularly susceptible to microbial contaminations because of the changes occurring in the tissues during processing. In package gas composition of modified atmosphere packaging (MAP) in combination with low storage temperatures besides reducing physiological activity of packaged produce, can also delay pathogen growth. Present study investigated on the effect of MAPs, achieved with different plastic films, on microbial growth of minimally processed cactus pear (Opuntio ficus-indica) fruit. Five different plastic materials were used for packaging the manually peeled fruit. That is: a) polypropylene film (Termoplast MY 40 micron thickness, O2 transmission rate 300 cc/m2/24h); b) polyethylene film (Bolphane BHE, 11 micron thickness, O2 transmission rate 19000 cc/m2/24h); c) polypropylene laser-perforated films (Mach Packaging) with 8, 16 or 32 100-micron holes. Total aerobic psychrophilic, mesophilic microorganisms, Enterobacteriaceae, yeast, mould populations and in-package CO2, O2 and C2H4 were determined at each storage time. Different final gas compositions, ranging from 7.8 KPa to 17.1 KPa O2, and 12.7 KPa to 2.6 KPa CO2, were achieved with MY and micro perforated films, respectively. Differences were detected in the mesophilic, Enterobacteriaceae and yeast loads, while no difference was detected in psychrophilic microorganisms. At the end of storage, microbial load in fruits sealed with MY film was significantly lower than in those sealed with BHE and micro perforated films. Furthermore, fruits packed with micro-perforated films showed the highest microbial load. This occurrence may in part be related to in-package gas composition and in part to a continuous contamination of microorganisms through micro-holes.


Assuntos
Embalagem de Alimentos/métodos , Frutas/química , Opuntia/microbiologia , Bactérias/crescimento & desenvolvimento , Manipulação de Alimentos , Embalagem de Alimentos/instrumentação , Armazenamento de Alimentos , Frutas/microbiologia , Fungos/crescimento & desenvolvimento , Humanos , Opuntia/química , Paladar
6.
Commun Agric Appl Biol Sci ; 78(2): 83-91, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-25145228

RESUMO

Postharvest heat treatments (hot water or hot air treatment) may be applied to horticultural crops to control fungal diseases, insect infestation and to reduce chilling injury in cultivars susceptible to low storage temperatures. The present study investigated the influence of hot water (53 degrees C for 60s) and hot air treatment (38 degrees C for 24h) applied to two typical Sardinian apple varieties, cvs. Miali and Caddina, on the composition of the lipophilic extracts of the peel as well as on the antioxidant activity of ethanolic extracts of both peel and pulp. The lipophilic extracts of the peel of the two varieties were almost similar and resulted to be dominated by the presence of triterpenes being ursolic and oleanoic acids the main metabolites in both analysed fruits. The chemical analysis of the extracts obtained from the different heat-treated samples for each variety revealed no significant difference in the relative distribution of triterpene components with respect to untreated control samples. This strongly suggested that heat treatment does not affect the composition of terpene metabolite profile of the fruit peel. On the other hand, the antioxidant activity of the ethanolic extracts of the peel and the pulp of heat treated was significantly different from that of control In particular, on Caddina variety the antioxidant activity levels of the peel were consistently higher than in the pulp and were affected by storage conditions. Differently, on Miali variety the antioxidant activity of heat-treated samples was higher than control sample in both peel and pulp.


Assuntos
Conservação de Alimentos/métodos , Malus/química , Extratos Vegetais/análise , Antioxidantes/análise , Frutas/química , Temperatura Alta , Triterpenos/análise
7.
Commun Agric Appl Biol Sci ; 77(3): 207-17, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23878975

RESUMO

Objective of this study was to evaluate the effect of prestorage dip treatments at 20 degrees C or 50 degrees C alone or with sodium carbonate (SC) and soy lecithin (LEC), either individually or in combination, on weight losses, peel disorders, overall appearance and decay of cactus pears. Fruits were subjected to a simulated Mediterranean fruit fly (medfly) disinfestation by cold quarantine at 2 degrees C for 21 days followed by one week of shelf-life at 20 degrees C. Hot water alone was very effective in reducing peel disorders and decay both during cold storage and shelf-life. SC applied at 20 degrees C showed a weak control of decay and chilling injury, while its effectiveness significantly increased when the solution temperature was set to 50 degrees C. LEC was more effective in preserving freshness during cold storage, but after shelf-life decay incidence in fruit dipped in LEC at 20 degrees C or 50 degrees C was higher than in those dipped in water at 20 degrees C or 50 degrees C, respectively. Significant but moderate differences were detected among treatments in weight loss. After shelf-life, fruit dipped in the heated mixture of SC and LEC showed the lowest incidence of peel disorders and the highest percentage of marketable fruit, although decay incidence was slightly higher than in fruit treated with SC at 50 degrees C. SC and LEC used in combination at 50 degrees C improved fruit tolerance to chilling injury and reduced decay.


Assuntos
Temperatura Baixa , Frutas/microbiologia , Lecitinas/farmacologia , Opuntia/microbiologia , Cloreto de Sódio/farmacologia , Água , Armazenamento de Alimentos , Fatores de Tempo
8.
Commun Agric Appl Biol Sci ; 77(3): 197-205, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23878974

RESUMO

The objective of this study was to evaluate the effectiveness of different commercial formulations of fungicides containing one or more active ingredients in controlling postharvest decay of Thyrinthos and Boccuccia apricots, Red top peaches and Caldesi nectarines. Field treatments consisted of two sprays with cupric compounds, at the end of leaf fall and before bud swelling, one with sulfur compound, at fruit about half final size stage, and one with one of the following commercial formulations at the label suggested rates, one week before harvest: Teldor (fenexamid 50%; Bayer Crop Protection), Folicur (Tebuconazole 4.35%; Bayer Crop Protection), Signum (boscalid 26.7%, pyraclostrobin 6.7%; Basf Crop Protection), Score (difenoconazole 23.23%, Syngenta Crop Protection) and Switch (cyprodinil 37.5%, fludioxonil 25%, Syngenta Crop Protection). After harvest the fruit were stored for 1 week at 6 degrees C and 90% RH followed by 1 week at 20 degrees C and 60% RH to simulate retail conditions, or placed directly at 20 degrees C. All formulations significantly reduced decay in all cultivars. Switch, Signum and Folicur were the most active, while Score was slightly less effective. Teldor activity was low, especially in Thyrintos apricots, where the percentage of rotten fruit was slightly lower than in control fruit. Brown rot was the most representative disease, but in apricots a high percentage of fruit was affected by blue mold and grey mold. Rhizopus rot generally developed as a secondary disease on fruit previously affected by other pathogens and was more frequent in control and Teldor treated fruit. Preharvest sprays with Signum 3 days before harvest reduced postharvest decay after 1 week storage at 20 degrees C in Glo haven peaches and Venus nectarine harvested at advanced stage of maturity. Combining pre-harvest sprays with Signum and a 2-min postharvest dip in 2% sodium bicarbonate at 20 degrees C further reduced decay. In Sothern regions of Italy, the use of synthetic fungicides only immediately before harvest in years when the weather conditions are not favorable to brown rot and other pathogens inducing postharvest decay, combined with a postharvest treatment with sodium bicarbonate could be a feasible integrated approach to reduce the risk of selection of resistant strains of fungi to synthetic fungicides while controlling effectively postharvest decay.


Assuntos
Frutas/microbiologia , Fungicidas Industriais/farmacologia , Prunus/microbiologia , Bicarbonato de Sódio/farmacologia
9.
Minerva Chir ; 64(2): 197-203, 2009 Apr.
Artigo em Italiano | MEDLINE | ID: mdl-19365320

RESUMO

AIM: Anorectal dysfunction is routinely treated at the Center for Pelvic Floor Rehabilitation, San Giovanni University Hospital, Turin, Italy. Of a total of 147 patients treated between April 2007 and May 2008, 44 (30%) received pelvic floor rehabilitation following anorectal surgery. With this study we wanted to evaluate the response of patients with constipation and/or fecal incontinence to postsurgical pelvic floor rehabilitation designed to regain full or partial anorectal function and so improve their quality of life. MATERIAL AND METHODS: The study population was 44 patients, subdivided into 3 groups. One group (n=25) consisted of patients with fecal incontinence, which was further split into two subgroups: subgroup A (n=10) with direct involvement of the anal sphincter at surgery and subgroup B (n=15) without sphincter involvement. The second group (n=12) included patients with constipation. The third group (n=7) included patients with constipation and incontinence; this group was further split into 2 subgroups: those in which constipation (n=5) and those in which incontinence (n=2) was predominant. Pre- and postrehabilitation anorectal function was compared using two types of assessment: 1) clinical evaluation with the Wexner incontinence scale and 2) diagnostic evaluation with anorectal manometry in patients with fecal incontinence (plus transanal sonography to determine anatomic damage in the subgroups in which the sphincter had been involved) and defecography in those with constipation (plus transit radiography to exclude intestinal colic-associated constipation). RESULTS: The number of patients classified as having severe incontinence decreased from 8 to 1 (-87.5%), those with moderate incontinence decreased from 8 to 4 (-50%); 20 out of 25 patients presented with mild dysfunction at the end of the rehabilitation program. No difference in response to treatment was found between the two subgroups of patients with fecal incontinence nor among those with constipation. Of those with predominant constipation, none were classified as having severe dysfunction; the number of those with moderate dysfunction decreased from 13 to 7 (-54%). CONCLUSIONS: The study results show that, when sufficiently motivated, patients with fecal incontinence and constipation following anorectal surgery respond positively to pelvic floor rehabilitation.


Assuntos
Constipação Intestinal/reabilitação , Incontinência Fecal/reabilitação , Diafragma da Pelve , Doenças Retais/complicações , Doenças Retais/cirurgia , Doenças do Ânus/complicações , Doenças do Ânus/cirurgia , Biorretroalimentação Psicológica/métodos , Constipação Intestinal/diagnóstico , Constipação Intestinal/epidemiologia , Constipação Intestinal/etiologia , Defecografia , Procedimentos Cirúrgicos do Sistema Digestório/efeitos adversos , Estimulação Elétrica/métodos , Terapia por Exercício/métodos , Incontinência Fecal/diagnóstico , Incontinência Fecal/epidemiologia , Incontinência Fecal/etiologia , Humanos , Itália/epidemiologia , Manometria , Prevalência , Qualidade de Vida , Recuperação de Função Fisiológica , Estudos Retrospectivos , Índice de Gravidade de Doença , Resultado do Tratamento
10.
Gene Ther ; 13(1): 88-94, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16107860

RESUMO

Adenovirus (Ad) vectors are of utility for many therapeutic applications. Strategies have been developed to alter adenoviral tropism to achieve a cell-specific gene delivery capacity employing fiber modifications allowing genetic incorporation of targeting motifs. In this regard, single chain antibodies (scFv) represent potentially useful agents to achieve targeted gene transfer. However, the distinct biosynthetic pathways that scFv and Ad capsid proteins are normally routed through have thus far been problematic with respect to scFv incorporation into the Ad capsid. Utilization of stable scFv, which also maintain correct folding and thus functionality under intracellular reducing conditions, could overcome this restriction. We genetically incorporated a stable scFv into a de-knobbed, fibritin-foldon trimerized Ad fiber and demonstrated selective targeting to the cognate epitope expressed on the membrane surface of cells. We have shown that the scFv employed in this study retains functionality and that stabilizing the targeting molecule, per se, is critical to allow retention of antigen recognition in the adenovirus capsid-incorporated context.


Assuntos
Adenoviridae/genética , Proteínas Precoces de Adenovirus/genética , DNA de Cadeia Simples/administração & dosagem , Terapia Genética/métodos , Vetores Genéticos/administração & dosagem , Região Variável de Imunoglobulina/genética , Adenoviridae/imunologia , Proteínas Precoces de Adenovirus/imunologia , Reações Antígeno-Anticorpo , Linhagem Celular , Epitopos , Expressão Gênica , Marcação de Genes , Engenharia Genética , Vetores Genéticos/genética , Humanos , Proteínas Recombinantes/administração & dosagem , Proteínas Recombinantes/genética , Transdução Genética/métodos
11.
Neuropharmacology ; 43(4): 607-18, 2002 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-12367606

RESUMO

In a recent study we have provided evidence that inhibition of native GABA(A) receptors by zinc depends primarily on the allosteric modulation of receptor gating. Both the kinetics and the sensitivity of the GABA(A) receptor to zinc depend on subunit composition, especially on the presence of the gamma(2) subunit. To analyze the mechanism of action of zinc its effects have been tested on recombinant alpha(1)beta(2)gamma(2) and alpha(1)beta(2) receptors expressed in HEK 293 cells. The currents produced by ultrafast application of GABA have been measured to assess the impact of zinc ions on GABA(A) receptor gating with resolution corresponding to the time scale of synaptic currents. While, as expected, zinc markedly reduced the peak amplitude of alpha(1)beta(2)-mediated currents, its effect on kinetics was significantly different from that observed for alpha(1)beta(2)gamma(2). In particular, unlike alpha(1)beta(2)gamma(2), zinc did not affect the onset of alpha(1)beta(2)-mediated responses. Moreover, zinc increased the extent of desensitisation of alpha(1)beta(2)gamma(2) receptors and reduced desensitisation of alpha(1)beta(2) ones. Quantitative analysis suggests that zinc exerts an allosteric modulation on both alpha(1)beta(2)gamma(2) and alpha(1)beta(2) receptors. Zinc effects on alpha(1)beta(2)gamma(2) were qualitatively similar to those reported for native receptors.


Assuntos
Receptores de GABA-A/efeitos dos fármacos , Zinco/farmacologia , Algoritmos , Linhagem Celular , Estimulação Elétrica , Eletrofisiologia , Humanos , Ativação do Canal Iônico/efeitos dos fármacos , Cinética , Modelos Neurológicos , Perfusão , Ligação Proteica , Proteínas Recombinantes/efeitos dos fármacos
12.
Acta Neurol Scand ; 105(5): 372-7, 2002 May.
Artigo em Inglês | MEDLINE | ID: mdl-11982488

RESUMO

OBJECTIVES: Pro-inflammatory cytokines mediate brain damage in multiple sclerosis (MS); they can also influence the hypothalamic-pituitary-adrenal (HPA) axis function. We evaluated the possible abnormalities of HPA axis function in relapsing-remitting MS (RR-MS). MATERIAL AND METHODS: IFN-gamma, TNF-alpha and IL-6 production by ex-vivo lymphocytes from 10 normal volunteers and 10 RR-MS patients before and during IFN-beta therapy was assessed; pituitary-adrenal function was evaluated by means of CRH and ACTH stimulation tests. RESULTS: In untreated patients the production of IFN-gamma, TNF-alpha, IL-6 was increased, and was significantly decreased by IFN-beta. Neither basal, nor stimulated ACTH, cortisol, DHEA, DHEAs, 17-alpha-OH-progesterone levels differed between controls and RR-MS patients, both before and during treatment. Moreover, no correlation was found between endocrine and immune parameters. CONCLUSION: In MS the HPA axis function seems normal and not influenced by IFN-beta treatment. This result is discussed in relation to the increased production of pro-inflammatory cytokines found in this disease.


Assuntos
Adjuvantes Imunológicos/uso terapêutico , Sistema Hipotálamo-Hipofisário/metabolismo , Sistema Hipotálamo-Hipofisário/fisiopatologia , Interferon beta/uso terapêutico , Interferon gama/metabolismo , Interleucina-6/metabolismo , Esclerose Múltipla , Sistema Hipófise-Suprarrenal/metabolismo , Sistema Hipófise-Suprarrenal/fisiopatologia , Fator de Necrose Tumoral alfa/metabolismo , Adulto , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Esclerose Múltipla/tratamento farmacológico , Esclerose Múltipla/metabolismo , Esclerose Múltipla/fisiopatologia
13.
Diabetes Metab ; 28(6 Pt 1): 499-503, 2002 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-12522331

RESUMO

BACKGROUND: Activation of the renin-angiotensin system (RAS) may induce cardiovascular and renal fibrosis in hypertension and diabetes. This fibrogenic effect is mainly mediated by Transforming Growth Factor-B1 (TGF-B1), a multifunctional citokyne released by endothelial, vascular smooth muscle and renal mesangial cells, that is able to increase extracellular matrix deposition. Retinal capillary pericytes have functions similar to those of mesangial cells, including ability to synthesize and release TGF-B1 and produce extracellular matrix. An intraocular RAS was described in the human eye and may produce effects similar to those observed in the heart and kidney, which could be mediated by TGF-B1. In particular, TGF-B1 might be involved in thickening of the capillary basement membrane in diabetic microangiopathy. We therefore aimed at evaluating the possible effects of Angiotensin-II on TGF-B1 secretion by cultured retinal pericytes (BRP). METHODS: BRP cultures were incubated with Angiotensin-II or insulin (known to play a permissive effect on TGF-B1 release from mesangial cells) or Angiotensin-II + insulin at final concentrations of 10-10, 10-8, 10-6, 10-4 mol/L. RESULTS: Baseline TGF-B1 concentrations in the supernatants of pericyte cultures were 6 139 +/- 1 919 pg/mL/106 cells; no changes of TGF-B1 concentrations resulted from adding increasing amounts of Ang II, insulin or both. CONCLUSIONS: Though confirming that cultured bovine retinal pericytes spontaneously release TGF-B1, Angiotensin-II did not produce any stimulatory effects of in our experimental system


Assuntos
Angiotensina II/farmacologia , Insulina/farmacologia , Pericitos/metabolismo , Retina/fisiologia , Fator de Crescimento Transformador beta/metabolismo , Análise de Variância , Animais , Bovinos , Células Cultivadas , Pericitos/citologia , Pericitos/efeitos dos fármacos , Retina/efeitos dos fármacos , Retina/metabolismo , Fator de Crescimento Transformador beta1
14.
FEBS Lett ; 508(3): 407-12, 2001 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-11728462

RESUMO

The intracellular expression of single-chain Fv antibody fragments (scFv) in eukaryotic cells has an enormous potential in functional genomics and therapeutics [Marasco (1997) Gene Ther. 4, 11-15; Richardson and Marasco (1995) Trends Biotechnol. 13, 306-310]. However, the application of these so-called intrabodies is currently limited by their unpredictable behavior under the reducing conditions encountered inside eukaryotic cells, which can affect their stability and solubility properties [Wörn et al. (2000) J. Biol. Chem. 275, 2795-2803; Biocca et al. (1995) Bio/Technology 13, 1110-1115]. We present a novel system that enables selection of stable and soluble intrabody frameworks in vivo without the requirement or knowledge of antigens. This system is based on the expression of single-chain antibodies fused to a selectable marker that can control gene expression and cell growth. Our results show that the activity of a selectable marker fused to well characterized scFvs [Wörn et al. (2000) J. Biol. Chem. 275, 2795-2803] correlates with the solubility and stability of the scFv moieties. This method provides a unique tool to identify stable and soluble scFv frameworks, which subsequently serve as acceptor backbones to construct intrabody complementarity determining region libraries by randomization of hypervariable loops.


Assuntos
Regiões Determinantes de Complementaridade/química , Proteínas de Ligação a DNA , Região Variável de Imunoglobulina/química , Proteínas Recombinantes de Fusão/química , Proteínas de Saccharomyces cerevisiae , Reações Antígeno-Anticorpo , Antígenos , Extratos Celulares , Linhagem Celular , Regiões Determinantes de Complementaridade/genética , Regiões Determinantes de Complementaridade/imunologia , Regiões Determinantes de Complementaridade/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/imunologia , Proteínas Fúngicas/metabolismo , Genes Reporter , Região Variável de Imunoglobulina/genética , Região Variável de Imunoglobulina/imunologia , Região Variável de Imunoglobulina/metabolismo , Zíper de Leucina , Complexo Mediador , Biblioteca de Peptídeos , Proteínas Quinases/química , Proteínas Quinases/imunologia , Proteínas Quinases/metabolismo , Proteínas Recombinantes de Fusão/imunologia , Saccharomyces cerevisiae/genética , Solubilidade , Transativadores/química , Transativadores/genética , Fatores de Transcrição/química , Fatores de Transcrição/metabolismo , Ativação Transcricional , beta-Galactosidase/metabolismo
15.
Nucleic Acids Res ; 29(22): 4570-80, 2001 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-11713306

RESUMO

Many transcription factors are multifunctional and also influence DNA replication. So far, their mechanism of action has remained elusive. Here we show that a DNA-binding protein could rely on the same biochemical activity that activates transcription to stimulate replication from the yeast chromosomal ARS1 origin. Unexpectedly, the ability to stimulate replication from this origin was not restricted to polymerase II transcription factors, but was a property shared by polymerase III factors. Furthermore, activation of replication did not depend on the process of transcription, but rather on the ability of DNA-binding transcription factors to remodel chromatin. The natural ARS1 activator Abf1 and the other transcription factors that stimulated replication remodeled chromatin in a very similar manner. Moreover, the presence of a histone H3 mutant that was previously shown to generally increase transcription also facilitated replication from ARS1 and partially compensated for the absence of a transcription factor. We propose that multifunctional transcription factors work by influencing the chromatin architecture at replication origins so as to generate a structure that is favorable to the initiation of replication.


Assuntos
Cromatina/metabolismo , Replicação do DNA/genética , RNA Polimerase III/metabolismo , RNA Polimerase II/metabolismo , Proteínas de Saccharomyces cerevisiae , Fatores de Transcrição/fisiologia , Sítios de Ligação , Cromatina/genética , Cromossomos Fúngicos/genética , Proteínas de Ligação a DNA/metabolismo , Proteínas de Ligação a DNA/fisiologia , Histonas/genética , Mutação , Ligação Proteica , Origem de Replicação/genética , Fatores de Transcrição/metabolismo , Transcrição Gênica
16.
Mol Genet Genomics ; 265(6): 1076-86, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11523780

RESUMO

The GAL11 gene encodes a transcription factor that is a component of the SRB/Mediator sub-complex of the RNA polymerase II holoenzyme in the yeast Saccharomyces cerevisiae. In agreement with this biochemical characterization, Gal11p has been found to be required for optimal production of mRNA from many yeast promoters, and recessive mutations in GAL11 have been shown to cause pleiotropic defects. Despite this progress, the role of Gal11p in gene regulation remains largely unknown. In a multicopy suppressor analysis of a gal11delta mutation we have identified genes encoding proteins that are part of, or can interact with, the RNA polymerase II transcription complex, as well as factors involved in cell cycle regulation. Among the suppressors that are clearly related to the transcriptional apparatus, Gal11p genetically interacts with components of the SRB/Mediator complex, as well as with factors such as TFIIE and TFIIH that are required for promoter clearance and transcription elongation by RNA polymerase II. These findings, taken together with published results of biochemical and genetic analyses, suggest a role for Galllp at the interface between the SRB/Mediator complex and the general transcription factors TFIIE and TFIIH, which modulate, via phosphorylation of the CTD, the activity of the RNA polymerase II during the transition between initiation and elongation.


Assuntos
Quinases Ciclina-Dependentes/genética , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Regulação Fúngica da Expressão Gênica , Regiões Promotoras Genéticas , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Transativadores/metabolismo , Regiões 5' não Traduzidas/genética , Sequência de Aminoácidos , Quinases Ciclina-Dependentes/química , DNA Fúngico/genética , Bases de Dados como Assunto , Biblioteca Genômica , Complexo Mediador , Dados de Sequência Molecular , Fenótipo , RNA Polimerase II/genética , RNA Polimerase II/metabolismo , RNA Mensageiro/genética , Proteínas Repressoras/química , Proteínas Repressoras/genética , Saccharomyces cerevisiae/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Supressão Genética , Transativadores/genética
17.
Biotechniques ; 30(2): 296-8, 300, 302, 2001 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-11233598

RESUMO

The RNA polymerase III-based two-hybrid system has been developed to detect interactions between proteins such as RNA polymerase II transcription factors and regulators that cannot be studied by the original RNA polymerase II two-hybrid system. This novel method appears to be most useful for a refined analysis of already known protein-protein interactions. However, the application of this system in library screenings has been impaired by the lack of a suitable assay for the selection of the activated pol III reporter gene in yeast. Here, we describe a novel selection assay for the pol III-based two-hybrid system that makes it readily usable for screening expression libraries to search for interacting partners. Our system utilizes a temperature-sensitive (ts) U6 snRNA, which is synthesized by RNA polymerase III from a mutated SNR6 gene in yeast. In this ts strain, interactions between hybrid proteins activate an artificial pol III reporter construct (UASG-SNR6), which controls expression of wild-type U6 snRNA. This wild-type U6 snRNA can suppress the ts phenotype and allow growth at the nonpermissive temperature of 37 degrees C, thus providing a positive selection system for interacting proteins.


Assuntos
Proteínas/metabolismo , RNA Polimerase III/metabolismo , RNA Nuclear Pequeno/genética , Fatores de Transcrição TFII/metabolismo , Fatores de Transcrição/metabolismo , Animais , Genes Reporter , Camundongos , Fator de Transcrição TFIIA , Fator de Transcrição TFIID , Leveduras/genética
18.
Mol Cell Biol ; 20(8): 2774-82, 2000 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-10733580

RESUMO

Several eukaryotic transcription factors such as Sp1 or Oct1 contain glutamine-rich domains that mediate transcriptional activation. In human cells, promoter-proximally bound glutamine-rich activation domains activate transcription poorly in the absence of acidic type activators bound at distal enhancers, but synergistically stimulate transcription with these remote activators. Glutamine-rich activation domains were previously reported to also function in the fission yeast Schizosaccharomyces pombe but not in the budding yeast Saccharomyces cerevisiae, suggesting that budding yeast lacks this pathway of transcriptional activation. The strong interaction of an Sp1 glutamine-rich domain with the general transcription factor TAF(II)110 (TAF(II)130), and the absence of any obvious TAF(II)110 homologue in the budding yeast genome, seemed to confirm this notion. We reinvestigated the phenomenon by reconstituting in the budding yeast an enhancer-promoter architecture that is prevalent in higher eukaryotes but less common in yeast. Under these conditions, we observed that glutamine-rich activation domains derived from both mammalian and yeast transcription factors activated only poorly on their own but strongly synergized with acidic activators bound at the remote enhancer position. The level of activation by the glutamine-rich activation domains of Sp1 and Oct1 in combination with a remote enhancer was similar in yeast and human cells. We also found that mutations in a glutamine-rich domain had similar phenotypes in budding yeast and human cells. Our results show that glutamine-rich activation domains behave very similarly in yeast and mammals and that their activity in budding yeast does not depend on the presence of a TAF(II)110 homologue.


Assuntos
Proteínas de Ligação a DNA/genética , Fator de Transcrição Sp1/genética , Fatores de Transcrição/genética , Ativação Transcricional , Sequência de Aminoácidos , Sequência Conservada , Evolução Molecular , Glutamina , Fator C1 de Célula Hospedeira , Humanos , Dados de Sequência Molecular , Fator 1 de Transcrição de Octâmero , Saccharomyces cerevisiae/genética
19.
J Neurosci ; 20(23): 8618-27, 2000 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-11102466

RESUMO

Zinc is abundantly present in the CNS, and after nerve stimulation is thought to be released in sufficient quantity to modulate the synaptic transmission. Although it is known that this divalent cation inhibits the GABAergic synaptic currents, the underlying mechanisms were not fully elucidated. Here we report that zinc reduced the amplitude, slowed the rise time, and accelerated the decay of mIPSCs in cultured hippocampal neurons. The analysis of current responses to rapid GABA applications and model simulations indicated that these effects on mIPSCs are caused by zinc modulation of GABA(A) receptor gating. In particular, zinc slowed the onset of GABA-evoked currents by decreasing both the binding (k(on)) and the transition rate from closed to open state (beta(2)). Moreover, slower onset and recovery from desensitization as well as an increased unbinding rate (k(off)) were shown to underlie the accelerated deactivation kinetics in the presence of zinc. The nonequilibrium conditions of GABA(A) receptor activation were found to strongly affect zinc modulation of this receptor. In particular, an extremely fast clearance of synaptic GABA is implicated to be responsible for a stronger zinc effect on mIPSCs than on current responses to exogenous GABA. Finally, the analysis of currents evoked by GABA coapplied with zinc indicated that the interaction between zinc and GABA(A) receptors was too slow to explain zinc effects in terms of competitive antagonism. In conclusion, our results provide evidence that inhibition of mIPSCs by zinc is attributable to the allosteric modulation of GABA(A) receptor gating.


Assuntos
Regulação Alostérica/fisiologia , Ativação do Canal Iônico/fisiologia , Neurônios/metabolismo , Receptores de GABA-A/metabolismo , Zinco/metabolismo , Regulação Alostérica/efeitos dos fármacos , Animais , Ligação Competitiva/efeitos dos fármacos , Células Cultivadas , Simulação por Computador , Relação Dose-Resposta a Droga , Potenciais Evocados/efeitos dos fármacos , Antagonistas GABAérgicos/farmacologia , Hipocampo/citologia , Hipocampo/efeitos dos fármacos , Hipocampo/metabolismo , Ativação do Canal Iônico/efeitos dos fármacos , Potenciais da Membrana/efeitos dos fármacos , Modelos Neurológicos , Inibição Neural/efeitos dos fármacos , Inibição Neural/fisiologia , Neurônios/citologia , Neurônios/efeitos dos fármacos , Técnicas de Patch-Clamp , Conformação Proteica/efeitos dos fármacos , Ratos , Ratos Wistar , Receptores de GABA-A/efeitos dos fármacos , Bloqueadores dos Canais de Sódio , Transmissão Sináptica/efeitos dos fármacos , Transmissão Sináptica/fisiologia , Zinco/farmacologia , beta-Alanina/farmacologia , Ácido gama-Aminobutírico/metabolismo , Ácido gama-Aminobutírico/farmacologia
20.
J Biol Chem ; 275(4): 2795-803, 2000 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-10644744

RESUMO

A cellular assay system for measuring the activity of cytoplasmically expressed anti-GCN4 scFv fragments directed against the Gcn4p dimerization domain was established in the budding yeast Saccharomyces cerevisiae. The inhibitory potential of different constitutively expressed anti-GCN4 scFv intrabodies was monitored by measuring the activity of beta-galactosidase expressed from a GCN4-dependent reporter gene. The in vivo performance of these scFv intrabodies in specifically decreasing reporter gene activity was related to their in vitro stability, measured by denaturant-induced equilibrium unfolding. A framework-engineered stabilized version showed significantly improved activity, while a destabilized point mutant of the anti-GCN4 wild-type showed decreased effects in vivo. These results indicate that stability engineering can result in improved performance of scFv fragments as intrabodies. Increasing the thermodynamic stability appears to be an essential factor for improving the yield of functional scFv in the reducing environment of the cytoplasm, where the conserved intradomain disulfides of antibody fragments cannot form.


Assuntos
Anticorpos Antifúngicos/imunologia , Citoplasma/imunologia , Proteínas de Ligação a DNA , Proteínas Fúngicas/imunologia , Proteínas Quinases/imunologia , Proteínas de Saccharomyces cerevisiae , Sequência de Aminoácidos , DNA Recombinante , Genes Reporter , Região Variável de Imunoglobulina/química , Região Variável de Imunoglobulina/genética , Modelos Moleculares , Dados de Sequência Molecular , Desnaturação Proteica , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/imunologia , Homologia de Sequência de Aminoácidos , Ressonância de Plasmônio de Superfície
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