Structure and photochemistry of di-tert-butyldiphosphatetrahedrane.

Di-tert-butyldiphosphatetrahedrane (tBuCP)2 (1) is a mixed carbon- and phosphorus-based tetrahedral molecule, isolobal to white phosphorus (P4). However, despite the fundamental significance and well-explored reactivity of the latter molecule, the precise structure of the free (tBuCP)2 molecule (1) and a detailed analysis of its electronic properties have remained elusive. Here, single-crystal X-ray structure determination of 1 at low temperature confirms the tetrahedral structure. Furthermore, quantum chemical calculations confirm that 1 is isolobal to P4 and shows a strong largely isotropic diamagnetic response in the magnetic field and thus pronounced spherical aromaticity. A spectroscopic and computational study on the photochemical reactivity reveals that diphosphatetrahedrane 1 readily dimerises to the ladderane-type phosphaalkyne tetramer (tBuCP)4 (2) under irradiation with UV light. With sufficient thermal activation energy, the dimerisation proceeds also in the dark. In both cases, an isomerisation to a 1,2-diphosphacyclobutadiene 1' is the first step. This intermediate subsequently undergoes a [2 + 2] cycloaddition with a second 1,2-diphosphacyclobutadiene molecule to form 2. The 1,2-diphosphacyclobutadiene intermediate 1' can be trapped chemically by N-methylmaleimide as an alternative [2 + 2] cycloaddition partner.

Synthesis and functionalization of the six-vertex anionic amido-substituted silicon cluster [Si6{N(SiMe3)Ph}5].

The reaction of the six-vertex amido-substituted silicon cluster Si6{N(SiMe3)Ph}6 1 with two equiv. of KC8 results in the abstraction of K{N(SiMe3)Ph} and leads to the contact ion pair 2 including an anionic silicon cluster with two unsubstituted pyramidal vertices. Facile functionalization of 2 was achieved with MeI, SiCl4 and SiBr4 and results in neutral two-fold functionalized silicon clusters.

Size-Reduced Basis Set Calculation of Accurate Isotropic Nuclear Magnetic Shieldings Using CTOCD-GRRO and GPRO Methods in Amino Acids and Oligopeptides.

The origin-independent magnetically induced CTOCD-GRRO and -GPRO (after continuous transformation of the origin of the current density-gradient of ρ and gradient of a power of ρ) current densities are shown to vary linearly with respect to their own defining α and ß parameters. The same is reflected in the connected magnetic properties, in particular the magnetic shielding. This is exploited to find values for α and ß that, using small basis sets, provide isotropic nuclear magnetic shieldings matching an accurate prediction, chosen as the complete basis set limit. An application to the 20 naturally occurring amino acids shows that different nuclei require different values of the parameters, which have been determined at the BHandHLYP/6-31+G(d,p) level with or without consideration of diversified chemical environments. Using CTOCD-GRRO and -GPRO methods, equipped with the optimized parameters at this low-cost level of calculation, 1H, 13C, 15N, and 17O magnetic shielding constants in glutathione, ophthalmic acid, and thyrotropin-releasing hormone are predicted with nearly the same accuracy as that of much more expensive calculations.

Transition-Metal-Stabilized Heavy Tetraphospholide Anions.

Phosphorus analogues of the ubiquitous cyclopentadienyl (Cp) are a rich and diverse family of compounds, which have found widespread use as ligands in organometallic complexes. By contrast, phospholes incorporating heavier group 14 elements (Si, Ge, Sn, and Pb) are hardly known. Here, we demonstrate the isolation of the first metal complexes featuring heavy cyclopentadienyl anions SnP42- and PbP42-. The complexes [(η4-tBu2C2P2)2Co2(µ,η5:η5-P4Tt)] [Tt = Sn (6), Pb (7)] are formed by reaction of white phosphorus (P4) with cyclooctadiene cobalt complexes [Ar'TtCo(η4-P2C2tBu2)(η4-COD)] [Tt = Sn (2), Pb (3), Ar' = C6H3-2,6{C6H3-2,6-iPr2}2, COD = cycloocta-1,5-diene] and Tt{Co(η4-P2C2tBu2)(COD)}2 [Tt = Sn (4), Pb (5)]. While the SnP42- complex 6 was isolated as a pure and stable compound, compound 7 eliminated Pb(0) below room temperature to afford [(η4-tBu2C2P2)2Co2(µ,η4:η4-P4) (8), which is a rare example of a tripledecker complex with a P42- middle deck. The electronic structures of 6-8 are analyzed using theoretical methods including an analysis of intrinsic bond orbitals and magnetic response theory. Thereby, the aromatic nature of P5- and SnP42- was confirmed, while for P42-, a specific type of symmetry-induced weak paramagnetism was found that is distinct from conventional antiaromatic species.

A natural scheme for the quantitative analysis of the magnetically induced molecular current density using an oriented flux-weighted stagnation graph. I. A minimal example for LiH.

A new natural scheme is introduced to analyze quantitatively the magnetically induced molecular current density vector field, J. The set of zero points of J, which is called its stagnation graph (SG), has been previously used to study the topological features of the current density of various molecules. Here, the line integrals of the induced magnetic field along edges of the connected subset of the SG are calculated. The edges are oriented such that all weights, i.e., flux values become non-negative, thereby, an oriented flux-weighted (current density) stagnation graph (OFW-SG) is obtained. Since in the exact theoretical limit, J is divergence-free and due to the topological characteristics of such vector fields, the flux of all separate vortices (current density domains) and neighbouring connected vortices can be determined exactly by adding the weights of cyclic subsets of edges (i.e., closed loops) of the OFW-SG. The procedure is exemplified by the minimal example of LiH for a weak homogeneous external magnetic field, B, perpendicular to the chemical bond. The OFW-SG exhibits one closed loop (formally decomposed into two edges), and an open line extending to infinity on both of its ends. The method provides the means of accurately determining the strength of the current density even in molecules with a complicated set of distinct vortices.

An Anionic Amido-Substituted Seven-Vertex Siliconoid Cluster.

The silanide [Si4 {N(SiMe3 )Dipp}3 ]- (1) transforms into the anionic siliconoid cluster [Si7 {N(SiMe3 )Dipp}3 ]- (2) with four unsubstituted silicon atoms as a contact ion pair with [K([18]crown-6)] in C6 D6 at room temperature within five weeks. Anion 2 was investigated by natural population analysis and visualization of intrinsic atomic orbitals. Magnetically induced current-density calculations of 2 revealed two distinct strong diatropic vortices that sum up in one direction and create a strongly shielded apical silicon atom in 2.

Relativistic Spin-Orbit Electronegativity and the Chemical Bond Between a Heavy Atom and a Light Atom.

Radek Marek and his co-workers at Masaryk University, Brno, Czechia have been invited to prepare the cover of this issue. The image depicts the relativistic spin-orbit coupling that is associated with the presence of a heavy atom in a molecule influencing the electron density around a light atom and modulating the chemical bond between these two atoms. Read the full text of the article at 10.1002/chem.202200277.

Relativistic Spin-Orbit Electronegativity and the Chemical Bond Between a Heavy Atom and a Light Atom.

Relativistic effects are known to alter the chemical bonds and spectroscopic properties of heavy-element compounds. In this work, we introduce the concept of spin-orbit (SO) electronegativity of a heavy atom, as reflected by an SO-induced change in the interatomic distance between the heavy atom (HA) and a neighboring light atom (LA). We provide a transparent interpretation of these SO effects by using the concept of spin-orbit electron deformation density (SO-EDD). Spin-orbit coupling at the HA induces rearrangement of the electron density for the scalar-relativistically optimized geometry that, in turn, exerts a new force on the LA. The resulting expansion or contraction of the HA-LA bond depends on the nature and electron configuration of the HA. In addition, we quantify the change in atomic electronegativity induced by SO coupling for a series of hydrides, thereby complementing the SO-EDD picture. The trends in the SO-induced electronegativity and the HA-LA bond length across the periodic table of elements are demonstrated and interpreted, and also linked, intuitively, with the SO-induced NMR shielding at the LA.

Integration of global ring currents using the Ampère-Maxwell law.

Magnetically induced ring currents are calculated from the magnetic shielding tensor by employing the Ampère-Maxwell law. The feasibility of the method is demonstrated by integrating the zz component of the shielding tensor along the symmetry axis of highly symmetric ring-shaped aromatic, antiaromatic and nonaromatic molecules. The calculated ring-current strengths agree perfectly with the ones obtained by integrating the current-density flux passing through a plane cutting half the molecular ring. The method can be used in combination with all electronic structure codes capable of calculating nuclear magnetic resonance (NMR) shielding tensors in general points in space. We also show that nucleus independent chemical shifts (NICS) along the symmetry axis are related to the spatial derivative of the strength of the global ring-current along the z axis.

Current density and molecular magnetic properties.

We give an overview of the molecular response to an external magnetic field perturbing quantum mechanical systems. We present state-of-the-art methods for calculating magnetically-induced current-density susceptibilities. We discuss the essence and properties of current-density susceptibilities and how molecular magnetic properties can be calculated from them. We also review the theory of spin-current densities, how relativity affects current densities and magnetic properties. An overview of the magnetic ring-current criterion for aromaticity is given, which has implications on theoretical and experimental research. The recently reported theory of antiaromaticity and how molecular symmetry affects the magnetic response are discussed and applied to closed-shell paramagnetic molecules. The topology of magnetically induced current densities and its consequences for molecular magnetic properties are also presented with twisted and toroidal molecules as examples.

Chemical constitution of polyfurfuryl alcohol investigated by FTIR and Resonant Raman spectroscopy.

The actual chemical structure of polyfurfuryl alcohol (PFA) is still uncertain in spite of several studies on the topic, variations during the polymerization processes being one reason that must be addressed. The use of a limited set of analytical techniques is often insufficient to provide an exhaustive chemical characterization. Moreover, it is still not possible to exactly determine presence and amount of each specific functional group in the polymeric structure. We employed both Fourier Transform Infrared Spectroscopy (FTIR) and Resonant Raman spectroscopy (RR), corroborated by quantum mechanically aided analysis of the experimental spectra, to infer about the chemical structure of two samples of PFAs, synthetized in different ways and appearing macroscopically different, the first one being a liquid and viscous commercial sample, the second one being a self-prepared solid and rigid sample produced following a thermosetting procedure. The vibrational spectroscopic analysis confirms the presence of differences in their chemical structures. The viscous form of PFA is mainly composed by short polymeric chains, and is characterized by the presence of isolated furfuryl alcohol and furfural residues similar to 5-hydroxymethylfurfural; the thermosetted PFA is formed by more cross-linked structures, characterized by several ketones and alkene double bonds, as well as a significant presence of Diels-Alder structures. In summary, the present study evidences how the use of both FTIR and RR spectroscopy, the latter carried out at several laser excitation wavelengths, indicates an accurate way to spectroscopically investigate complex polymers enabling to satisfactorily infer about their peculiar chemical structure.

London dispersion-driven hetero-aryl-aryl interactions in 1,2-diaryldisilanes.

Non-covalent aryl-aryl interactions for the molecular structures of three 1,2-diaryltetramethyldisilanes X5C6-(SiMe2)2-C6Y5 (X ≠ Y; X, Y = H, F, Cl) were studied by single crystal X-ray and gas electron diffraction as well as by SAPT calculations. Aryl-aryl interactions cause all to adopt exclusively rather untypical eclipsed syn-conformers in the gas phase, and C6F5-(SiMe2)2-C6Cl5 also in the solid state.

Aryl-Aryl Interactions in (Aryl-Perhalogenated) 1,2-Diaryldisilanes.

Three 1,2-diaryltetramethyldisilanes X5 C6 -(SiMe2 )2 -C6 X5 with two C6 H5 , C6 F5 , or C6 Cl5 groups were studied concerning the importance of London dispersion driven interactions between their aryl groups. They were prepared from 1,2-dichlorotetramethyldisilane by salt elimination. Their structures were determined in the solid state by X-ray diffraction and for free molecules by gas electron-diffraction. The solid-state structures of the fluorinated and chlorinated derivatives are dominated by aryl-aryl interactions. Unexpectedly, Cl5 C6 -(SiMe2 )2 -C6 Cl5 exists exclusively as an eclipsed syn-conformer in the gas phase with strongly distorted Si-C6 Cl5 units due to strong intramolecular interactions. In contrast, F5 C6 -(SiMe2 )2 -C6 F5 reveals weaker interactions. The contributions to the total interaction energy were analyzed by SAPT calculations.

Understanding the Polymerization of Polyfurfuryl Alcohol: Ring Opening and Diels-Alder Reactions.

Polyfurfuryl alcohol (PFA) is one of the most intriguing polymers because, despite its easy polymerization in acid environment, its molecular structure is definitely not obvious. Many studies have been performed in recent decades, and every time, surprising aspects came out. With the present study, we aim to take advantage of all of the findings of previous investigations and exploit them for the interpretation of the completely cured PFA spectra registered with three of the most powerful techniques for the characterization of solid, insoluble polymers: Solid-State 13C-NMR, Attenuated Total Reflectance (ATR), Fourier Transform Infrared (FTIR) spectroscopy, and UV-resonant Raman spectroscopy at different excitation wavelengths, using both an UV laser source and UV synchrotron radiation. In addition, the foreseen structures were modeled and the corresponding 13C-NMR and FTIR spectra were simulated with first-principles and semi-empiric methods to evaluate their matching with experimental ones. Thanks to this multi-technique approach, based on complementary analytical tools and computational support, it was possible to conclude that, in addition to the major linear unconjugated polymerization, the PFA structure consists of Diels-Alder rearrangements occurring after the opening of some furanic units, while the terminal moieties of the chain involves γ-lactone arrangements. The occurrence of head-head methylene ether bridges and free hydroxyl groups (from unreacted furfuryl alcohol, FA, or terminal chains) could be excluded, while the conjugated systems could be considered rather limited.

A comparison of computational methodologies for the structural modelling of biologically relevant zinc complexes.

The impact of a variety of modern computational methods on the structure of biologically relevant zinc complexes is studied. Different density functionals and a Hartree-Fock-based method, scalar-relativistic effects, and basis set integration grid choices, among others, are assessed for set of high-resolution crystallographic structures. While a previous study recommends incorporating relativistic effects into density functional theory calculations in order to improve the accuracy of obtained geometries for small Zn(II) coordination compounds, we show that, for the set in study, relativistic effects do not affect the geometries to a significant extent. The PBEh-3c composite method emerges as good alternative for the treatment of Zn(II) complexes, while the HF-3c method can be employed when computational efficiency is important. Graphical Abstract Which methods are best suited for the computation of Zn(II) bioligand complexes?

Ligand Coordination in Bis(ß-diketonato) d Metals: The Mn(II) Case of D2 h versus D2 d Symmetry.

The structure of free manganese(II) bis-acetylacetonate [Mn(acac)2] was determined experimentally by gas-phase electron diffraction. The vapor at 197(5) °C is composed of a single conformer of Mn(acac)2 in D2 d symmetry with a central structural motif of an elongated MnO4 tetrahedron with a Mn-O distance ( re) of 2.035(5) Å and a bond angle in chelate rings (∠O-Mn-O) of 89.4(6)°. This result contradicts the predicted planar structure of the MO4 moiety ( D2 h) with a short Mn-O distance ( re) of 1.771 Å from a MC(5i5)QDPT2 calculation. From these findings and by comparison with data from the literature, we conclude that in general in bis(ß-diketonato) coordination compounds of d metals there is a perpendicular arrangement of the two ligands for d0, d5, and d10 coordination centers and a planar arrangement ( D2 h) for others.

Atomically Precise Expansion of Unsaturated Silicon Clusters.

Small- to medium-sized clusters occur in various areas of chemistry, for example, as active species of heterogeneous catalysis or as transient intermediates during chemical vapor deposition. The manipulation of stable representatives is mostly limited to the stabilizing ligand periphery, virtually excluding the systematic variation of the property-determining cluster scaffold. We now report the deliberate expansion of a stable unsaturated silicon cluster from six to seven and finally eight vertices. The consecutive application of lithium/naphthalene as the reducing agent and decamethylsilicocene as the electrophilic source of silicon results in the expansion of the core by precisely one atom with the potential of infinite repetition.

Intramolecular London Dispersion Interaction Effects on Gas-Phase and Solid-State Structures of Diamondoid Dimers.

The covalent diamantyl (C28H38) and oxadiamantyl (C26H34O2) dimers are stabilized by London dispersion attractions between the dimer moieties. Their solid-state and gas-phase structures were studied using a multitechnique approach, including single-crystal X-ray diffraction (XRD), gas-phase electron diffraction (GED), a combined GED/microwave (MW) spectroscopy study, and quantum chemical calculations. The inclusion of medium-range electron correlation as well as the London dispersion energy in density functional theory is essential to reproduce the experimental geometries. The conformational dynamics computed for C26H34O2 agree well with solution NMR data and help in the assignment of the gas-phase MW data to individual diastereomers. Both in the solid state and the gas phase the central C-C bond is of similar length for the diamantyl [XRD, 1.642(2) Å; GED, 1.630(5) Å] and the oxadiamantyl dimers [XRD, 1.643(1) Å; GED, 1.632(9) Å; GED+MW, 1.632(5) Å], despite the presence of two oxygen atoms. Out of a larger series of quantum chemical computations, the best match with the experimental reference data is achieved with the PBEh-3c, PBE0-D3, PBE0, B3PW91-D3, and M06-2X approaches. This is the first gas-phase confirmation that the markedly elongated C-C bond is an intrinsic feature of the molecule and that crystal packing effects have only a minor influence.

The Structure of Mn(acac)3 -Experimental Evidence of a Static Jahn-Teller Effect in the Gas Phase.

The structure of free manganese(III) tris(acetylacetonate) [Mn(acac)3 ] was determined by mass-spectrometrically controlled gas-phase electron diffraction. The vapor of Mn(acac)3 at 125(5) °C is composed of a single conformer of Mn(acac)3 in C2 symmetry with the central structural motif of a tetragonal elongated MnO6 octahedron and 47(2) mol % of acetylacetone (Hacac) formed by partial thermal decomposition of Mn(acac)3 . Three types of Mn-O separations have been refined (rh1 =2.157(16), 1.946(5), and 1.932(5) Å. We have found no indication for a significant deviation of the -C-C-C-O-Mn-O- six-membered rings from planarity, which is observed in the solid state.