Increased rates of large-magnitude explosive eruptions in Japan in the late Neogene and Quaternary.

Tephra layers in marine sediment cores from scientific ocean drilling largely record high-magnitude silicic explosive eruptions in the Japan arc for up to the last 20 million years. Analysis of the thickness variation with distance of 180 tephra layers from a global data set suggests that the majority of the visible tephra layers used in this study are the products of caldera-forming eruptions with magnitude (M) > 6, considering their distances at the respective drilling sites to their likely volcanic sources. Frequency of visible tephra layers in cores indicates a marked increase in rates of large magnitude explosive eruptions at ∼8 Ma, 6-4 Ma, and further increase after ∼2 Ma. These changes are attributed to major changes in tectonic plate interactions. Lower rates of large magnitude explosive volcanism in the Miocene are related to a strike-slip-dominated boundary (and temporary cessation or deceleration of subduction) between the Philippine Sea Plate and southwest Japan, combined with the possibility that much of the arc in northern Japan was submerged beneath sea level partly due to previous tectonic extension of northern Honshu related to formation of the Sea of Japan. Changes in plate motions and subduction dynamics during the ∼8 Ma to present period led to (1) increased arc-normal subduction in southwest Japan (and resumption of arc volcanism) and (2) shift from extension to compression of the upper plate in northeast Japan, leading to uplift, crustal thickening and favorable conditions for accumulation of the large volumes of silicic magma needed for explosive caldera-forming eruptions.

Using multiple markers to elucidate the ancient, historical and modern relationships among North American Arctic dog breeds.

Throughout most of the Americas, post-colonial dogs largely erased the genetic signatures of pre-historical dogs. However, the North American Arctic harbors dogs that are potentially descended from pre-historical ancestors, as well as those affected by post-colonial translocations and admixtures. In particular, Inuit dogs from Canada and Greenland are thought to descend from dogs associated with Thule peoples, who relied on them for transportation ca. 1000 years ago. Whether Thule dogs reflected an earlier colonization by Paleoeskimo dogs ca. 4500 years ago is unknown. During the Alaskan Gold Rush, additional sled dogs, possibly of post-colonial derivation, the Alaskan Husky, Malamute and Siberian Husky, were used in the Arctic. The genealogical relationships among and origins of these breeds are unknown. Here we use autosomal, paternal and maternal DNA markers to (1) test the hypothesis that Inuit dogs have retained their indigenous ancestry, (2) characterize their relationship to one another and to other Arctic breeds, and (3) estimate the age of North American indigenous matrilines and patrilines. On the basis of the agreement of all three markers we determined that Inuit dogs have maintained their indigenous nature, and that they likely derive from Thule dogs. In addition, we provide support for previous research that the Inuit dogs from Canada and Greenland dog should not be distinguished as two breeds. The Alaskan Husky displayed evidence of European introgression, in contrast to the Malamute and Siberian Husky, which appear to have maintained most of their ancient Siberian ancestry.

Next-generation sequencing workflow for assembly of nonmodel mitogenomes exemplified with North Pacific albatrosses (Phoebastria spp.).

Use of complete mitochondrial genomes (mitogenomes) can greatly increase the resolution achievable in phylogeographic and historical demographic studies. Using next-generation sequencing methods, it is now feasible to efficiently sequence mitogenomes of large numbers of individuals once a reference mitogenome is available. However, assembling the initial mitogenomes of nonmodel organisms can present challenges, for example, in birds, where mtDNA is often subject to gene rearrangements and duplications. We developed a workflow based on Illumina paired-end, whole-genome shotgun sequencing, which we used to generate complete 19-kilobase mitogenomes for each of three species of North Pacific albatross, a group of birds known to carry a tandem duplication. Although this duplication had been described previously, our procedure did not depend on this prior knowledge, nor did it require a closely related reference mitogenome (e.g. a mammalian mitogenome was sufficient). We employed an iterative process including de novo assembly, reference-guided assembly and gap closing, which enabled us to detect duplications, determine gene order and identify sequence for primer positioning to resolve any mitogenome ambiguity (via minimal targeted Sanger sequencing). We present full mtDNA annotations, including 22 tRNAs, 2 rRNAs, 13 protein-coding genes, a control region and a duplicated feature for all three species. Pairwise comparisons supported previous hypotheses regarding the phylogenetic relationships within this group and occurrence of a shared tandem duplication. The resulting mitogenome sequences will enable rapid, high-throughput NGS mitogenome sequencing of North Pacific albatrosses via direct reference-guided assembly. Moreover, our approach to assembling mitogenomes should be applicable to any taxon.

Volatile organic pollutants in new and established buildings in Melbourne, Australia.

Volatile organic compounds (VOCs) within new and established buildings have been determined and factors significant to their presence have been identified. In established dwellings, total volatile organic compound (TVOC) concentrations were low, but were approximately four times higher than in outdoor air, showing a dominant effect of indoor sources. The presence of attached garages, site contamination and 'faulty' wool carpet were associated with higher indoor pollution. In three dwellings, unidentified sources of benzene were indicated. Much higher VOC concentrations were observed in new or renovated buildings, persisting above "baseline" levels for several weeks, concentration decay rate correlating with VOC molecular volume, indicating emissions were limited by material diffusion processes. VOC and formaldehyde emission decays in a new dwelling occurred by a double-exponential source model. This shows that persistent low levels of volatile organic pollutants in established dwellings can occur due to long-term emissions from building materials.

Perchlorate levels in samples of sodium nitrate fertilizer derived from Chilean caliche.

Paleogeochemical deposits in northern Chile are a rich source of naturally occurring sodium nitrate (Chile saltpeter). These ores are mined to isolate NaNO3 (16-0-0) for use as fertilizer. Coincidentally, these very same deposits are a natural source of perchlorate anion (ClO4-). At sufficiently high concentrations, perchlorate interferes with iodide uptake in the thyroid gland and has been used medicinally for this purpose. In 1997, perchlorate contamination was discovered in a number of US water supplies, including Lake Mead and the Colorado River. Subsequently, the Environmental Protection Agency added this species to the Contaminant Candidate List for drinking water and will begin assessing occurrence via the Unregulated Contaminants Monitoring Rule in 2001. Effective risk assessment requires characterizing possible sources, including fertilizer. Samples were analyzed by ion chromatography and confirmed by complexation electrospray ionization mass spectrometry. Within a lot, distribution of perchlorate is nearly homogeneous, presumably due to the manufacturing process. Two different lots we analyzed differed by 15%, containing an average of either 1.5 or 1.8 mg g-1. Inadequate sample size can lead to incorrect estimations; 100-g samples gave sufficiently consistent and reproducible results. At present, information on natural attenuation, plant uptake, use/application, and dilution is too limited to evaluate the significance of these findings, and further research is needed in these areas.

Synergistic activity of endochitinase and exochitinase from Trichoderma atroviride (T. harzianum) against the pathogenic fungus (Venturia inaequalis) in transgenic apple plants.

Genes from the biocontrol fungus Trichoderma atroviride encoding the antifungal proteins endochitinase or exochitinase (N-acetyl-beta-D-hexosaminidase) were inserted into 'Marshall McIntosh' apple singly and in combination. The genes were driven by a modified CaMV35S promoter. The resulting plants were screened for resistance to Venturia inaequalis, the causal agent of apple scab, and for effects of enzyme expression on growth. Disease resistance was correlated with the level of expression of either enzyme when expressed alone but exochitinase was less effective than endochitinase. The level of expression of endochitinase was negatively correlated with plant growth while exochitinase had no consistent effect on this character. Plants expressing both enzymes simultaneously were more resistant than plants expressing either single enzyme at the same level; analyses indicated that the two enzymes acted synergistically to reduce disease. Selected lines, especially one expressing low levels of endochitinase activity and moderate levels of exochitinase activity, were highly resistant in growth chamber trials and had negligible reduction in vigor relative to control plants. We believe that this is the first report of resistance in plants induced by expression of an N-acetylhexosaminidase and is the first report of in planta synergy between an exochitinase and an endochitinase.

Perchlorate uptake by salt cedar (Tamarix ramosissima) in the Las Vegas wash riparian ecosystem.

Perchlorate ion (ClO4-) has been identified in samples of dormant salt cedar (Tamarix ramosissima) growing in the Las Vegas Wash. Perchlorate is an oxidant, but its reduction is kinetically hindered. Concern over thyroid effects caused the Environmental Protection Agency (EPA) to add perchlorate to the drinking water Contaminant Candidate List (CCL). Beginning in 2001, utilities will look for perchlorate under the Unregulated Contaminants Monitoring Rule (UCMR). In wood samples acquired from the same plant growing in a contaminated stream, perchlorate concentrations were found as follows: 5-6 microg g(-1) in dry twigs extending above the water and 300 microg g(-1) in stalks immersed in the stream. Perchlorate was leached from samples of wood, and the resulting solutions were analyzed by ion chromatography after clean-up. The identification was confirmed by electrospray ionization mass spectrometry after complexation of perchlorate with decyltrimethylammonium cation. Because salt cedar is regarded as an invasive species, there are large scale programs aimed at eliminating it. However, this work suggests that salt cedar might play a role in the ecological distribution of perchlorate as an environmental contaminant. Consequently, a thorough investigation of the fate and transport of perchlorate in tamarisks is required to assess the effects that eradication might have on perchlorate-tainted riparian ecosystems, such as the Las Vegas Wash. This is especially important since water from the wash enters Lake Mead and the Colorado River and has the potential to affect the potable water source of tens of millions of people as well as irrigation water used on a variety of crops, including much of the lettuce produced in the USA.

Influence of reagent purity on the ion chromatographic determination of bromate in water using 3,3'-dimethoxybenzidine as a prochromophore for photometric detection.

Variable availability of the purified dihydrochloride salt of 3,3'-dimethoxybenzidine (DMB; ortho-dianisidine) led us to investigate the effects of reagent purity on the analytical results obtained when this reagent is used in the photometric determination of the disinfection byproduct bromate. After analyte ions are separated by ion chromatography, a solution of DMB (post-column reagent) is added to the eluate and the DMB is oxidized, thereby producing a chromophore detected by its absorbance. Although some commercial products of undefined grade performed well, others did not. Variability was also observed between lots of purified material. Sensitivity at low concentrations (< 5 micrograms L-1 BrO3-) varied by a factor of up to 10. In some cases, the lower limit of detection for photometric detection was greater than that obtained using conductivity detection, as high as 5-7 micrograms L-1 BrO3-. An impurity or several impurities are suspected to be responsible for deviations from linearity at low analyte concentrations. This investigation underscores the need for ensuring reagent purity in environmental analyses. Ideally, chemical manufacturers will meet the needs of analytical chemists who test potable water and begin producing a high grade material in sufficient quantities to meet monitoring requirements. The establishment of third-party standards for a spectrophotometric grade of DMB.2HCl would be helpful in ensuring that a variety of manufacturers could supply products of uniformly high quality that would be suitable for the measurement of bromate in public drinking water supplies.

Chamber assessment of formaldehyde and VOC emissions from wood-based panels.

Volatile organic emissions from particleboard, medium density fibreboard (MDF) and office furniture have been measured in dynamic environmental chambers, both small and room-sized. Characterisation of product emission properties in small chambers was possible when inter- and intra-sheet variations were considered. Formaldehyde emission factors for all products were approximately double European low-emission specifications and did not decay to the latter for several months. Long-term emission behaviour could not be predicted from short-term measurements. Volatile organic compounds (VOC) emissions were low for the MDF product, higher for particleboard, and highest for laminated office furniture. The compounds emitted differed from those reported in other countries. VOC emissions from the sheet products decreased more quickly than formaldehyde, reaching low levels within two weeks, except for MDF which was found to become a low-level source of hexanal after several months.

Assessment of pollutant emissions from dry-process photocopiers.

Processes involved in pollutant emissions from a dry-process photocopier have been investigated in a controlled room dynamic environmental chamber. Volatile organic compound (VOC) emissions occurred at a constant rate dependent on copy speed. However, VOC emission rates per copy were increased by increases in chamber temperature (e.g., a 20% increase resulted from increasing temperature from 23 degrees C to 32 degrees C) or changing from single- to double-sided operation (40% increase). Respirable particle emissions occurred under copier-idle mode (probably from residues in the machine) as well as with copying. No significant chamber sink effects were observed for VOCs or respirable particles. Small emissions of nitrogen dioxide, ozone and formaldehyde were observed but were difficult to interpret. A procedure for assessing pollutant emissions from photocopiers is recommended.

Identification of co-dominant RAPD markers tightly linked to fruit skin color in apple.

A simple genetic basis for the red/yellow skincolor polymorphism in apple was verified using DNA markers. Bulked segregant analysis identified one 10-base oligomer that generated different fragments in each of the bulks. After testing the primer in four populations, two fragments were found to be associated with red skin color and another two fragments associated with yellow skin color. Three of the fragments (1160, 1180, and 1230 bp) were partly sequenced and found to share high sequence homology, suggesting these were generated from the same locus. A pair of universal primers were designed to amplify the fragments. In the 'Rome Beauty' x 'White Angel' population, two fragments were associated with red skin color; one fragment designated as A(1) (1160 bp) was from 'Rome Beauty' and another fragment (A(2), 1180 bp) was from 'White Angel'. Progeny possessing both fragments, or either one, had red fruit. Both parents displayed an alternate fragment, a(1) (1230 bp), associated with yellowskinned fruit. In three other crosses tested, only fragment A(1) co-segregated with red skin color; two fragments, a(1) and a(2) (1230 bp and 1320 bp), were associated with yellow skin color. Our results are consistent with the hypothesis that the red/yellow dimorphism is controlled by a monogenic system with the presence of the red anthocyanin pigmentation being dominant. There was no indication that other modifier genes could reverse the effect of the locus (R f ) linked to the markers. Examination of amplification products in 56 apple cultivars and advanced breeding selections demonstrated that the universal primers could be used to correctly predict fruit skin color in most cases.

Optimisation of a screening procedure for house dust mite numbers in carpets and preliminary application to buildings.

The relative performances of the mobility and heat escape methods for measuring house dust mite numbers in carpet has been evaluated. The optimum method was found to be the mobility method for 24 hours at ambient temperatures which exhibited a mite collection efficiency of approximately 30%. Measurements in three dwellings showed that the method should be applied to carpet at several locations in the living room and/or bedrooms as a general sampling procedure, or adjacent to loungeroom seating to determine the worst case scenario. Carpets using different types of fibre within the same dwelling should be assessed separately. For the limited number of dwellings investigated, wool carpets were found to exhibit higher mite numbers than nylon carpets, even when the former had been insect-resist treated. No house dust mites were found in the wool carpets of an office building which was mechanically ventilated and heated and achieved low indoor humidities in winter.

Blood cholinesterase in rats fed an insect resistance apple clone containing a natural cholinesterase inhibitor.

A crab apple clone (Malus brevipes 1021), highly resistant to the apple maggot, is being used in breeding programs developing commercial apple cultivars. This study has discovered that this crab apple contains a natural cholinesterase (ChE) inhibitor that caused a 17.5% in vitro inhibition of rat blood ChE activity. This crab apple also showed a relatively high total (titratable) acidity of 1.28%. The commercial, nonresistant, apple cultivar McIntosh was capable of causing a 7.9% inhibition of blood ChE in vitro. The total acidity in McIntosh was 0.45%. A 4-wk feeding study compared 2 groups of 5-wk-old Fischer 344 male rats fed diets containing 45% of either M. brevipes or McIntosh freeze-dried apples to a third (control) group of rats fed a semipurified diet. In vivo blood ChE activities were similar in all groups of rats, as well as hemoglobin, hematocrit, and red blood cell counts. The liver mixed-function oxidase activity through aminopyrine N-demethylase in the rats fed the apple diets was higher than the controls, but p-nitroanisole O-demethylase activity was induced only in the animals fed the maggot-resistant crab apple. Lowered growth with concomitant lowered food intake, in the otherwise healthy rats fed the maggot-resistant crab apple diet, was attributed to the less palatable, highly acidic fruit. This study indicates that the natural ChE inhibitor in the insect-resistant apple M. brevipes is apparently detoxified upon ingestion.

Characterization of the fiber diameter distributions of synthetic mineral fiber products and their dusts.

Procedures to measure the fiber diameter distributions of bulk synthetic mineral fiber products in order to characterize product differences and the diameters of airborne fibers emitted from them have been investigated. Bulk fibers were prepared for size measurement by two methods--one that gently teased fibers apart and another that lightly ground them in a liquid slurry. Bulk products exhibited different contents of respirable fibers, but these were significantly greater when products were prepared by grinding rather than teasing. This was established to result from preferential breakdown of finer fibers into shorter lengths with the former method. Airborne fibers emitted during work operations with products had diameter distributions similar to those of ground fibers, indicating that similar breakdown of finer fibers into shorter lengths occurs for dusts emitted during such operations.

Phosphor-based thermometry of the rotor in a high-power electrical generator.

A prototype on-line rotor temperature monitor based on phosphor decay-time measurements using optical fibers was tested on two large electrical generators.

Lack of immune response to mouse IgG in hemophilia A patients treated chronically with Monoclate, a monoclonal antibody affinity purified factor VIII preparation.

Hemophilia A is caused by factor VIII deficiency that historically has been treated with either a cryoprecipitate fraction of serum or factor VIII concentrate. Recently, the availability of affinity isolated factor VIII (Monoclate) has allowed for a highly purified preparation for the chronic therapy of hemophilia A. This factor VIII preparation contains a trace quantity (less than 50 ng/100 I. U.) of mouse IgG. Immunoassays for the measurement of human IgG, IgM and IgE anti-mouse IgG antibody (HAMA) were developed and used to measure HAMA levels in hemophilia A patients undergoing chronic therapy with Monoclate in three different clinical studies. Natural antibodies to mouse IgG were observed in patient sera prior to Monoclate infusion. Data is presented demonstrating that induction of HAMA upon Monoclate treatment does not occur. The low level of mouse IgG contained in Monoclate appears to be below the threshold of immunogenicity. Most importantly, clinical symptoms related to hypersensitivity or anaphylaxis were never observed in any patient undergoing chronic therapy with Monoclate in these clinical studies.

Health symptoms and occupational exposure to flea control products among California pet handlers.

A statewide telephone survey of health symptoms associated with occupational exposure to flea control products among California pet handlers was conducted in 1987 following several reports of ill workers. The 696 employees interviewed worked at veterinary clinics, pet stores, pet boarding kennels, pet grooming shops, and animal control facilities. Symptom incidence and frequency and flea control product use were reported for the 3 months prior to interview. Eye and skin symptoms and unusual tiredness were elevated among workers who applied flea control products to animals or facilities. After adjustment for potential confounders, these symptoms were elevated 64% to 258% among applicators as compared to nonapplicators who worked in the same facilities. Workers who used protective clothing and equipment and followed some protective work practices were not at increased symptom risk. Some specific flea control active ingredients and application procedures were associated with respiratory effects and with symptoms suggesting systemic pesticide poisoning.

Cholinesterase activity depression among California agricultural pesticide applicators.

Cholinesterase activity measurements for 542 California agricultural pesticide applicators under medical supervision during the first 9 months of 1985 were analyzed. Twenty-six workers, 4.8% of the sample, had cholinesterase values at or below the California threshold values for removal from continued exposure to cholinesterase-inhibiting pesticides (60% of baseline for red blood cell cholinesterase and 50% of baseline for plasma cholinesterase activity). Eight of these 26 workers, 31.5%, had pesticide-related illnesses. Pesticides most frequently associated with cholinesterase depressions exceeding California threshold values included mevinphos (Phosdrin), oxydemeton methyl (Metasystox-R), methomyl (Lannate), and acephate (Orthene); these pesticides included organophosphates in toxicity categories I and II and one carbamate in toxicity category I.

Occupational illnesses from cholinesterase-inhibiting pesticides among agricultural applicators in California, 1982-1985.

California pesticide illness investigation reports involving toxicity category I or II organophosphate and carbamate pesticide exposures among agricultural pesticide applicators were reviewed for the years 1982-1985. The pesticides associated with each illness were recorded, and the exposures were classified as chronic, short-term, or accidental. Illnesses were associated with a range of pesticides, including both organophosphates and carbamates in both toxicity categories I and II. Approximately 19% of the illnesses were due to accidents. Overall, the analysis identified a need for improving occupational health surveillance and the regulations governing worker health and safety.