Biotic and abiotic effects of soil organic matter on the phytoavailable phosphorus in soils: a review.

Soil organic matter (SOM) has a critical role in regulating soil phosphorus (P) dynamics and producing phytoavailable P. However, soil P dynamics are often explained mainly by the effects of soil pH, clay contents, and elemental compositions, such as calcium, iron, and aluminum. Therefore, a better understanding of the mechanisms of how SOM influences phytoavailable P in soils is required for establishing effective agricultural management for soil health and enhancement of soil fertility, especially P-use efficiency. In this review, the following abiotic and biotic mechanisms are discussed; (1) competitive sorption between SOM with P for positively charged adsorption sites of clays and metal oxides (abiotic reaction), (2) competitive complexations between SOM with P for cations (abiotic reaction), (3) competitive complexations between incorporation of P by binary complexations of SOM and bridging cations with the formation of stable P minerals (abiotic reaction), (4) enhanced activities of enzymes, which affects soil P dynamics (biotic reaction), (5) mineralization/immobilization of P during the decay of SOM (biotic reaction), and (6) solubilization of inorganic P mediated by organic acids released by microbes (biotic reaction).

Changes in Metabolic Profile of Rice Leaves Induced by Humic Acids.

The use of humic substances in agriculture as a biostimulant emerged as one of the promising methods to promote sustainable production. Different molecular, biochemical, and physiological processes are triggered, resulting in nutrient efficiency use and protection against abiotic stress. Understanding plant changes promoted by humic substances is essential for innovative and tailored biostimulation technologies. Cell metabolites are the final target of the response chain, and the metabolomic approach can be helpful in unveiling pathways related to plant response. This study aimed to evaluate a global metabolic alteration of rice leaves induced by humic acids (HA) applied in a hydroponics system. Using 1H NMR and GC-TOF/MS analysis, we observed a significant decrease in all main metabolites classes in leaves treated with HA, including lipids, organic acids, amino acids, and carbohydrates. Metabolites in higher concentrations in HA-treated plants are candidates as markers of HA bioactivity, including amino acids, intermediates of tricarboxylic acid cycle, and lipids, and aromatic compounds related to plant-stress response.

Multiomic Approaches Reveal Hormonal Modulation and Nitrogen Uptake and Assimilation in the Initial Growth of Maize Inoculated with Herbaspirillum seropedicae.

Herbaspirillum seropedicae is an endophytic bacterium that can fix nitrogen and synthesize phytohormones, which can lead to a plant growth-promoting effect when used as a microbial inoculant. Studies focused on mechanisms of action are crucial for a better understanding of the bacteria-plant interaction and optimization of plant growth-promoting response. This work aims to understand the underlined mechanisms responsible for the early stimulatory growth effects of H. seropedicae inoculation in maize. To perform these studies, we combined transcriptomic and proteomic approaches with physiological analysis. The results obtained eight days after inoculation (d.a.i) showed increased root biomass (233 and 253%) and shoot biomass (249 and 264%), respectively, for the fresh and dry mass of maize-inoculated seedlings and increased green content and development. Omics data analysis, before a positive biostimulation phenotype (5 d.a.i.) revealed that inoculation increases N-uptake and N-assimilation machinery through differentially expressed nitrate transporters and amino acid pathways, as well carbon/nitrogen metabolism integration by the tricarboxylic acid cycle and the polyamine pathway. Additionally, phytohormone levels of root and shoot tissues increased in bacterium-inoculated-maize plants, leading to feedback regulation by the ubiquitin-proteasome system. The early biostimulatory effect of H. seropedicae partially results from hormonal modulation coupled with efficient nutrient uptake-assimilation and a boost in primary anabolic metabolism of carbon-nitrogen integrative pathways.

Mutualistic interaction of native Serratia marcescens UENF-22GI with Trichoderma longibrachiatum UENF-F476 boosting seedling growth of tomato and papaya.

A plethora of bacteria-fungal interactions occur on the extended fungal hyphae network in soil. The mycosphere of saprophytic fungi can serve as a bacterial niche boosting their survival, dispersion, and activity. Such ecological concepts can be converted to bioproducts for sustainable agriculture. Accordingly, we tested the hypothesis that the well-characterised beneficial bacterium Serratia marcescens UENF-22GI can enhance plant growth-promoting properties when combined with Trichoderma longibrachiatum UENF-F476. The cultural and cell interactions demonstrated S. marcescens and T. longibrachiatum mutual compatibility. Bacteria cells were able to attach, forming aggregates to biofilms and migrating through the fungal hyphae network. Long-distance bacterial migration through growing hyphae was confirmed using a two-compartment Petri dishes assay. Fungal inoculation increased the bacteria survival rates into the vermicompost substrate over the experimental time. Also, in vitro indolic compound, phosphorus, and zinc solubilisation bacteria activities increased in the presence of the fungus. In line with the ecophysiological bacteria fitness, the bacterium-fungal combination boosted tomato and papaya plantlet growth when applied into the plant substrate under nursery conditions. Mutualistic interaction between mycosphere-colonizing bacterium S. marcescens UENF-22GI and the saprotrophic fungi T. longibrachiatum UENF-F467 increased the ecological fitness of the bacteria alongside with beneficial potential for plant growth. A proper combination and delivery of mutual compatible beneficial bacteria-fungal represent an open avenue for microbial-based products for the biological enrichment of plant substrates in agricultural systems.

From Lab to Field: Role of Humic Substances Under Open-Field and Greenhouse Conditions as Biostimulant and Biocontrol Agent.

The demand for biostimulants has been growing at an annual rate of 10 and 12.4% in Europe and Northern America, respectively. The beneficial effects of humic substances (HS) as biostimulants of plant growth have been well-known since the 1980s, and they can be supportive to a circular economy if they are extracted from different renewable resources of organic matter including harvest residues, wastewater, sewage sludge, and manure. This paper presents an overview of the scientific outputs on application methods of HS in different conditions. Firstly, the functionality of HS in the primary and secondary metabolism under stressed and non-stressed cropping conditions is discussed along with crop protection against pathogens. Secondly, the advantages and limitations of five different types of HS application under open-fields and greenhouse conditions are described. Key factors, such as the chemical structure of HS, application method, optimal rate, and field circumstances, play a crucial role in enhancing plant growth by HS treatment as a biostimulant. If we can get a better grip on these factors, HS has the potential to become a part of circular agriculture.

Evaluation of the effects of humic acids on maize root architecture by label-free proteomics analysis.

Humic substances have been widely used as plant growth promoters to improve the yield of agricultural crops. However, the mechanisms underlying this effect remain unclear. Root soluble protein profiles in plants 11 days after planting and cultivated with and without humic acids (HA, 50 mg CL-1), were analyzed using the label-free quantitative proteomic approach. Cultivation of maize with HA resulted in higher fresh weight of roots than in untreated plants (control). Plants treated with HA showed increased number, diameter and length of roots. In the proteomics analysis, differences were detected in the following categories: energy metabolism, cytoskeleton, cellular transport, conformation and degradation of proteins, and DNA replication. Thirty-four proteins were significantly more abundant in the seedlings treated with HA, whereas only nine proteins were abundant in the control. The effects on root architecture, such as the induction of lateral roots and biomass increase were accompanied by changes in the energy metabolism-associated proteins. The results show that the main effect of HA is protective, mainly associated with increased expression of the 2-cys peroxidase, putative VHS/GAT, and glutathione proteins. Indeed, these proteins had the highest fold-difference. Overall, these results improve our understanding of the molecular mechanisms of HA-promoted plant growth.

Phosphatase activity and its relationship with physical and chemical parameters during vermicomposting of filter cake and cattle manure.

BACKGROUND: Recycling of phosphorus (P) from organic residues (ORs) is important to develop environmentally friendly agriculture. The use of this P source depends on phosphatase enzymes, which can be affected by a chain of parameters during maturation of ORs. In this study the phosphatase activity levels throughout vermicomposting of filter cake (FC) and cattle manure (CM) were correlated with different physical and chemical parameters in an effort to increase the knowledge about recycling of P from ORs. RESULTS: FC presented higher total nitrogen content (TNC), total organic carbon (TOC), humic acid (HA) content, water-soluble P (WSP), phosphatase activities and nanopore volume than CM during vermicomposting. Decreases in TOC of CM resulted from carbohydrate mineralization, which was not observed for FC. CM showed increased hydrophobic index during vermicomposting while FC showed a slight decrease. CONCLUSION: Phosphatase activities correlated positively with TOC, pH and WSP and negatively with HA content for both vermicomposts. Nanopore volume was negatively correlated with phosphatase activities for FC but not for CM. No correlations between hydrophobicity and phosphatase activities were found for FC. Increased hydrophobicity throughout vermicomposting of CM could be partially associated with decreases in phosphatase levels.

Molecular characteristics of humic acids isolated from vermicomposts and their relationship to bioactivity.

Vermitechnology is an effective composting method, which transforms biomass into nutrient-rich organic fertilizer. Mature vermicompost is a renewable organic product containing humic substances with high biological activity. The aim of this study was to assess the chemical characteristics and the bioactivity of humic acids isolated from different vermicomposts produced with either cattle manure, sugar cane bagasse, sunflower cake from seed oil extraction, or filter cake from a sugar cane factory. More than 200 different molecules were found, and it was possible to identify chemical markers on humic acids according to the nature of the organic source. The large hydrophobic character of humic extracts and the preservation of altered lignin derivatives confer to humic acids the ability to induce lateral root emergence in maize seedlings. Humic acid-like substances extracted from plant biomass residues represent an additional valuable product of vermicomposting that can be used as a plant growth promoter.

Adição de ácido cítrico potencializa a ação de ácidos húmicos e altera o perfil protéico da membrana plasmática em raízes de milho / Citric acid addition improve humic acids action and change proteins profile from plasma membrane of maize roots

A promoção do crescimento vegetal pelos ácidos húmicos tem sido atribuída a ações similares a hormônios, devido à promoção do desenvolvimento e proliferação das raízes, resultando numa absorção mais eficiente de água e nutrientes. O objetivo deste trabalho foi analisar as mudanças na arquitetura radicular em plântulas de milho e no perfil de proteínas da membrana plasmática (MP) promovidas pelo tratamento com ácidos húmicos (AH) isolados de vermicomposto (20mg C L-1). O efeito da adição de ácido cítrico (AC), importante ácido orgânico presente nos exudados radiculares, sobre a bioatividade destes AH também foi investigada. Foram analisados o comprimento da raiz principal, o número de sítios de mitose, o número e comprimento de raízes laterais e a área radicular total. Para a análise do perfil protéico, vesículas da MP de células de raízes foram obtidas por fracionamento celular e as proteínas analisadas por eletroforese uni (1D) e bidimensional (2D). Observou-se que a adição de AC (0,005mM) aos AH estimularam a promoção do crescimento das raízes laterais (126 por cento), da área radicular (58 por cento) e do número de raízes laterais (55 por cento) em relação às plantas controle. A atividade da bomba de H+ da membrana plasmática, analisada como marcador bioquímico de indução do mecanismo do crescimento ácido, também foi significativamente estimulada (374 por cento) pela solução húmica suplementada com AC. O perfil protéico da MP revelou uma supressão da expressão das proteínas nesta membrana, induzida pelo tratamento com AH e, na presença de AC, esse efeito foi ainda mais evidente. Os resultados obtidos corroboram o mecanismo proposto para a bioatividade de AH no qual a ação de ácidos orgânicos exudados pelas plantas, tais como o AC, promove o rompimento da associação supramolecular dessas substâncias, tornando as moléculas bioativas presentes nos agregados húmicos mais acessíveis aos receptores celulares das raízes.

The plant growth stimulation by humic acids (HA) has been attributed to a hormone-like effect as promoting the root development and proliferation, resulting in a more efficient water and nutrient absorption. This research aims to investigate how the humic acids isolated from vermicompost (20mg L-1) can modify the root architecture and the plasma membrane (PM) protein patterns in maize roots. It was also analyzed the effect of the citric acid (CA), an organic acid present in root exudates. The changes induced in the corn root system were estimated by measuring the taproot length, the amount of root mitotic sites and lateral roots, and the total root area. Plasma membrane vesicles were purified by cell fractionation and the protein patterns were analyzed by uni (1D) and bidimensional (2D) electrophoresis. The results show that the HA in solution with CA (0.005mM) increases the lateral root growth promotion (126 percent), the root area (58 percent), and the number of lateral roots (55 percent). The activity of the plasma membrane H+ pump, analyzed as a marker of the induction of the acid growth mechanism, was also enhanced (374 percent) by the humic solution supplemented with CA. Expression of several plasma membrane proteins was inhibited when plants were treated with HA and this effect was more pronounced upon CA supplementation. The obtained results corroborate the proposed mechanism for the HA bioactivity, by which under the action of root-exuded organic acids, such as CA, a disruption of the HA macrostructure is promoted releasing bioactive molecules presented in the humic aggregates, which becomes more accessible to the root cell receptors.

Qualidade da matéria orgânica e distribuição do fósforo no solo de lavouras orgânicas de café Conilon / Organic matter quality and phosphorus distribution in soils under organic Conilon coffee

O cultivo de café orgânico utiliza fontes não solúveis de fósforo e grande quantidade e variedade de material orgânico em seu manejo. Assim, o objetivo do trabalho foi avaliar as frações que compõem a matéria orgânica e distribuição do fósforo no solo de cafeeiros Coffea canephora da cultivar 'Conilon' cultivados sob diferentes sistemas de manejos de produção orgânica. O solo foi coletado na projeção da copa do cafeeiro, na camada de 0 a 20cm. Determinaram-se as características químicas e granulométricas do solo em procedimentos de rotina e as frações de fósforo e da material orgânica. Na maioria das lavouras, o fósforo orgânico constituiu a maior parte do fósforo lábil, e a fração humina constituiu a maior parte da matéria orgânica. Houve maior presença de fósforo inorgânico nos solos das lavouras com maiores concentrações de fósforo total e lábil. O conteúdo total de Pi + Po nos solos avaliados apresentou valores elevados, variando de 426,9 até 910,4mg dm-3 de solo. A fração humina constituiu a maior parte da matéria orgânica. As frações que compõem a distribuição do fósforo no solo apresentaram discrepâncias entre os sistemas de manejos de produção orgânica.

The organic management in coffee uses insoluble phosphorus sources and a large quantity and variety of organic material. Thus, the objective of this research was to evaluate organic matter composition and phosphorus distribution on soils from Coffea canephora cv. 'Conilon' crops, under different organic management production systems. Soil under the coffee tree canopy was collected from 0 to 20cm depth. Chemical and soil texture characteristics were determined by routine analysis as well as phosphorus and organic matter constitution. On the average crops organic phosphorus was the main part of the labile phosphorus and carbon humine. There was a higher content of inorganic phosphorus on soils from the crops with the highest concentrations of total and labile phosphorus. The total content of Pi + Po in the evaluated soils showed high and variation from 426.9 to 910.4mg dm-3 of soil. The humin fraction formed the bulk of organic matter. The fractions that make up the phosphorus distribution in the soil showed discrepanncies between the organic management production systems.

Efeito dos ácidos húmicos na inoculação de bactérias diazotróficas endofíticas em sementes de milho / Effect of the humic acids in endophytic diazotrophic bacteria inoculation in corn seeds

Os ácidos húmicos podem atuar no aumento da população de bactérias diazotróficas introduzidas no interior da planta e, consequentemente, no incremento dos efeitos benéficos sobre a planta hospedeira. Com este trabalho, objetivou-se avaliar o efeito dos ácidos húmicos na inoculação de bactérias diazotróficas endofíticas, em sementes de milho. Foi utilizada a estirpe Herbaspirillum seropedicae Z67 BR 11175. A inoculação das sementes com as bactérias e a adição de ácidos húmicos foram realizadas pelo recobrimento das sementes de milho UENF 506-8, com a mistura de calcário, meio de cultura semisólido, água e cimentante. As sementes recobertas foram semeadas em vasos Leonard. Aos 40 dias após a semeadura, as plântulas foram coletadas, e foi realizada a contagem de bactérias nas raízes pela técnica do Número Mais Provável. Os resultados deste trabalho mostram que os ácidos húmicos não interferem negativamente no crescimento das bactérias e estimulam a colonização da microbiota nativa. No entanto, nas condições avaliadas, a aplicação conjunta de bactérias + ácidos húmicos não estimulou o crescimento da população de bactérias inoculadas nas plântulas de milho.

The objective of this research was to evaluate the effect of the humic acids in the inoculation of endophytic diazotrophic bacteria in corn seeds. It was used the bacteria Herbaspirillum seropedicae Z67 BR 11175. The inoculation of the seeds with the bacteria and the addition of humic acids were accomplished by the coating of the corn seeds UENF 506-8. The coating was accomplished with a mixture of lime, semi-solid middle culture, water and cement. The seeds covered were sown in Leonard vases. Forty days after sowing the plants were collected and the bacteria couting was accomplished in the roots by the Most probable Number technique. The results showed that the humic acids doesn't interfere negatively in the bacteria growth of and they stimulate the colonization of the native microbiota. However, in the appraised conditions, the united application of bacteria + humic acids didn't stimulate the growth of the bacteria population inoculated in the corn seedling.

Indolacetic and humic acids induce lateral root development through a concerted plasmalemma and tonoplast H+ pumps activation.

Increasing evidences have indicated that humic substances can induce plant growth and productivity by functioning as an environmental source of auxinic activity. Here we comparatively evaluate the effects of indole-3-acetic acid (IAA) and humic acids (HA) isolated from two different soils (Inseptsol and Ultisol) and two different organic residues (vermicompost and sewage sludge) on root development and on activities of plasmalemma and tonoplast H(+ )pumps from maize roots. The data show that HA isolated from these different sources as well as low IAA concentrations (10(-10) and 10(-15) M) improve root growth through a markedly proliferation of lateral roots along with a differential activation not only of the plasmalemma but also of vacuolar H(+)-ATPases and H(+)-pyrophosphatase. Further, the vacuolar H(+)-ATPase had a peak of stimulation in a range from 10(-8) to 10(-10) M IAA, whereas the H(+)-pyrophosphatase was sensitive to a much broader range of IAA concentrations from 10(-3) to 10(-15) M. It is proposed a complementary view of the acid growth mechanism in which a concerted activation of the plasmalemma and tonoplast H(+ )pumps plays a key role in the root cell expansion process driven by environment-derived molecules endowed with auxinic activity, such as that of humic substances.

Fracionamento químico da matéria orgânica e características de ácidos húmicos de solos com horizonte a antrópico da amazônia (Terra Preta) / Chemical fractionation of organic matter and humic acid characteristic in anthropogenic dark earth soils of brazilian amazonic region

Os solos da Amazônia que possuem horizonte A antrópico (Au) apresentam elevada fertilidade natural geralmente atribuída ao teor elevado de matéria orgânica e à sua elevada reatividade. Neste estudo foram quantificadas as substâncias húmicas e caracterizados os ácidos húmicos (AH) extraídos da camada 0-20 cm de solos com horizonte Au do estado do Amazonas (Terra Preta de índio) sob floresta e cultivo agrícola. Também foram investigadas amostras de solos adjacentes sem o horizonte antrópico. A caracterização dos AH foi realizada através de análise termogravimétrica, análise da composição elementar e quantificação dos grupos funcionais (total, carboxílica e fenólica). Os horizontes A de solos antropogênicos apresentaram maior teor de carbono total, comparados aos de solos adjacentes. Entre as frações húmicas, a mais abundante foi a humina. A fração de ácidos húmicos (AH) foi a dominante das frações alcalino-solúveis nos solos estudados. Os AH dos solos antropogênicos tanto sob floresta como sob cultivo agrícola apresentaram maior grau de humificação quando comparados aos AH dos solos sem o horizonte Au. O cultivo agrícola também teve efeito na estabilidade e reatividade dos AH nos solos antropogênicos.

Amazonian dark earth soils that have anthropogenic A horizon (Au) present high natural fertility usually attributed to their high organic matter content and to their higher reactivity. In this study humic substances were quantified and the humic acids (HA) extracted from the 0-20 cm layer of Amazonian dark earth soils (Terra Preta do índio) under forest and agricultural use were characterized. Adjacent soils with no Au horizon were also investigated. The HA were characterized through the thermogravimetric analysis, elemental composition analysis and characterization of functional groups (total, carboxylic, and phenolic). The A horizon of the anthropogenic soils presented higher total carbon level compared to adjacent soils. Among the humic fractions, the humin was the most abundant. The humic acid fraction (HA) was the dominant among the alkaline soluble fractions. The humic acids of the anthropogenic soils, both under forest and cultivation, showed higher humification degree compared to the non-anthropogenic soils. The agricultural cultivation affected the humic acids stability and reactivity in the anthropogenic soils.

Humic acids isolated from earthworm compost enhance root elongation, lateral root emergence, and plasma membrane H+-ATPase activity in maize roots.

Earthworms (Eisenia foetida) produce humic substances that can influence plant growth by mechanisms that are not yet clear. In this work, we investigated the effects of humic acids (HAs) isolated from cattle manure earthworm compost on the earliest stages of lateral root development and on the plasma membrane H(+)-ATPase activity. These HAs enhance the root growth of maize (Zea mays) seedlings in conjunction with a marked proliferation of sites of lateral root emergence. They also stimulate the plasma membrane H(+)-ATPase activity, apparently associated with an ability to promote expression of this enzyme. In addition, structural analysis reveals the presence of exchangeable auxin groups in the macrostructure of the earthworm compost HA. These results may shed light on the hormonal activity that has been postulated for these humic substances.