A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis.

The genus Passiflora comprises a large group of plants popularly known as passionfruit, much appreciated for their exotic flowers and edible fruits. The species (∼500) are morphologically variable (e.g., growth habit, size, and color of flowers) and are adapted to distinct tropical ecosystems. In this study, we generated the genome of the wild diploid species Passiflora organensis Gardner by adopting a hybrid assembly approach. Passiflora organensis has a small genome of 259 Mbp and a heterozygosity rate of 81%, consistent with its reproductive system. Most of the genome sequences could be integrated into its chromosomes with cytogenomic markers (satellite DNA) as references. The repeated sequences accounted for 58.55% of the total DNA analyzed, and the Tekay lineage was the prevalent retrotransposon. In total, 25,327 coding genes were predicted. Passiflora organensis retains 5,609 singletons and 15,671 gene families. We focused on the genes potentially involved in the locus determining self-incompatibility and the MADS-box gene family, allowing us to infer expansions and contractions within specific subfamilies. Finally, we recovered the organellar DNA. Structural rearrangements and two mitoviruses, besides relics of other mobile elements, were found in the chloroplast and mt-DNA molecules, respectively. This study presents the first draft genome assembly of a wild Passiflora species, providing a valuable sequence resource for genomic and evolutionary studies on the genus, and support for breeding cropped passionfruit species.

Molecular analysis of Aspergillus section Flavi isolated from Brazil nuts.

Brazil nuts are an important export market in its main producing countries, including Brazil, Bolivia, and Peru. Approximately 30,000 tons of Brazil nuts are harvested each year. However, substantial nut contamination by Aspergillus section Flavi occurs with subsequent production of aflatoxins. In our study, Aspergillus section Flavi were isolated from Brazil nuts (Bertholletia excelsa), and identified by morphological and molecular means. We obtained 241 isolates from nut samples, 41% positive for aflatoxin production. Eighty-one isolates were selected for molecular investigation. Pairwise genetic distances among isolates and phylogenetic relationships were assessed. The following Aspergillus species were identified: A. flavus, A. caelatus, A. nomius, A. tamarii, A. bombycis, and A. arachidicola. Additionally, molecular profiles indicated a high level of nucleotide variation within ß-tubulin and calmodulin gene sequences associated with high genetic divergence from RAPD data. Among the 81 isolates analyzed by molecular means, three of them were phylogenetically distinct from all other isolates representing the six species of section Flavi. A putative novel species was identified based on molecular profiles.

Symptomless infection of banana and maize by endophytic fungi impairs photosynthetic efficiency.

Very little is known about the physiological interactions between plant hosts and symptomless endophytic fungi despite their widespread occurrence. We investigated the impact of two such fungi, Colletotrichum musae and Fusarium moniliforme, upon the photosynthetic capacity of two crop plants, banana and maize, respectively. Endophyte-free plants were obtained first and then infected with the fungi. Measurements of total chlorophyll content revealed very little difference between endophyte-free and infected plants of banana, whereas in maize they showed 50% reductions in the endophyte-infected plants. The maximum photochemical capacity (Fv /Fm ) was measured in order to determine if the plants had any photoinhibitory effect caused by biotic or abiotic factors. After 45 d of growth, endophyte-free banana plants had similar values of Fv /Fm to plants typical of nonstressed conditions, whereas the endophyte-infected plants showed a reduction of approx. 15%. Unlike banana, infected maize plants displayed values of Fv /Fm similar to those of control and endophyte-free plants, indicating that the maximum photochemical capacity was not affected by infection. The light response curves of both species showed that the photosynthethic capacity was severely reduced in endophyte-infected plants, reaching saturation at c. 400 µmol m-2 s-1 whereas the control and endophyte-free plants were saturated at much higher photon flux densities. In banana the effect seemed to be due to an impairment of electron transport in the thylakoid membranes. By contrast, reduction of the photosynthetic capacity in maize was due to a reduction in chlorophyll content, leading to a decrease in the electron transport components and a consequent reduction in carbohydrate synthesis. It is possible that the reduction in the maximum yield of photosynthesis in both crops was caused by toxins produced by the fungi. Nevertheless there were no major macroscopic effects on the plants to indicate disease symptoms.