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1.
J Phys Chem B ; 128(15): 3764-3774, 2024 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-38576228

RESUMO

Sequestration of acid gas in geological formations is a disposal method with potential economic and environmental benefits. The process is governed by variables such as gas-water interfacial tension, wetting transition, and gas adsorption into water, among other things. However, the influence of the pressure and temperature on these parameters is poorly understood. This study investigates these parameters using coarse-grained molecular dynamics (CG-MD) simulations and density gradient theory (DGT). Simulations were carried out at 313.15 K and a pressure range of 0-15 MPa. A comparison was made against H2S-water systems to clarify the effects of adsorption on interfacial tension due to vapor-liquid-liquid equilibrium. The predicted H2S-water interfacial tension and phase densities by CG-MD and DGT matched the experimental values well. The adsorption can be quantified via the Gibbs Adsorption function Γ12, which correlated well with the three-phase transition. On the one hand, pressure increments below the three-phase transition revealed a significant adsorption of H2S. On the other hand, above the three-phase transition, the Gibbs Adsorption capacity remained constant, which indicated a saturation of H2S at the water surface due to liquid-liquid equilibrium. Finally, H2S behaves markedly differently in wetting transition, rather than the involved for CO2 to different molecular layers beneath the surface of aqueous solutions. In this respect, H2S is represented by a first-order wetting transition while CO2 presents a critical wetting. Finally, it has also been found that the preferential adsorption of H2S over the H2O interface is greater if compared to that of CO2, due to its strong interaction with water. In fact, we have also demonstrated that CO2 under triphasic conditions strongly influences the wetting of the ternary system.

2.
Int J Biol Macromol ; 255: 128119, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37977458

RESUMO

Deep-sea organisms must cope with high hydrostatic pressures (HHP) up to the kbar regime to control their biomolecular processes. To alleviate the adverse effects of HHP on protein stability most organisms use high amounts of osmolytes. Little is known about the effects of these high concentrations on ligand binding. We studied the effect of the deep-sea osmolytes trimethylamine-N-oxide, glycine, and glycine betaine on the binding between lysozyme and the tri-saccharide NAG3, employing experimental and theoretical tools to reveal the combined effect of osmolytes and HHP on the conformational dynamics, hydration changes, and thermodynamics of the binding process. Due to their different chemical makeup, these cosolutes modulate the protein-sugar interaction in different ways, leading to significant changes in the binding constant and its pressure dependence. These findings suggest that deep-sea organisms may down- and up-regulate reactions in response to HHP stress by altering the concentration and type of the intracellular osmolyte.


Assuntos
Glicina , Metilaminas , Pressão Hidrostática , Termodinâmica , Glicina/química , Metilaminas/química
3.
Phys Chem Chem Phys ; 24(45): 27930-27939, 2022 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-36373217

RESUMO

Osmolytes are well-known biocatalyst stabilisers as they promote the folded state of proteins, and a stabilised biocatalyst might also improve reaction kinetics. In this work, the influence of four osmolytes (betaine, glycerol, trehalose, and trimethylamine N-oxide) on the activity and stability of Candida bondinii formate dehydrogenase cbFDH was studied experimentally and theoretically. Scanning differential fluorimetric studies were performed to assess the thermal stability of cbFDH, while UV detection was used to reveal changes in cbFDH activity and reaction equilibrium at osmolyte concentrations between 0.25 and 1 mol kg-1. The thermodynamic model ePC-SAFT advanced allowed predicting the effects of osmolyte on the reaction equilibrium by accounting for interactions involving osmolyte, products, substrates, and water. The results show that osmolytes at low concentrations were beneficial for both, thermal stability and cbFDH activity, while keeping the equilibrium yield at high level. Molecular dynamics simulations were used to describe the solvation around the cbFDH surface and the volume exclusion effect, proofing the beneficial effect of the osmolytes on cbFDH activity, especially at low concentrations of trimethylamine N-oxide and betaine. Different mechanisms of stabilisation (dependent on the osmolyte) show the importance of studying solvent-protein dynamics towards the design of optimised biocatalytic processes.


Assuntos
Betaína , Formiato Desidrogenases , Formiato Desidrogenases/química , Betaína/química , Metilaminas/química , Termodinâmica
4.
Molecules ; 26(21)2021 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-34771030

RESUMO

This study compares performances of the Critical Point-based revision of Perturbed-Chain SAFT (CP-PC-SAFT) and the SAFT of Variable Range and Mie Potential (SAFT-VR-Mie) in predicting the available data on VLE, LLVE, critical loci and saturated phase densities of systems comprising CO, O2, CH4, H2S, SO2, propane, the refrigerants R22, R23, R114, R124, R125, R125, R134a, and R1234ze(E) and ionic liquids (ILs) with 1-alkyl-3-methylimidazolium ([Cnmim]+) cations and bis(trifluoromethanesulfonyl)imide ([NTf2]-), tetrafluoroborate ([BF4]-) and hexafluorophosphate ([PF6]-) anions. Both models were implemented in the entirely predictive manner with k12 = 0. The fundamental Global Phase Diagram considerations of the IL systems are discussed. It is demonstrated that despite a number of quantitative inaccuracies, both models are capable of reproducing the regularities characteristic for the considered systems, which makes them suitable for preliminary estimation of selectivity of the ILs in separating various gases.

5.
Phys Chem Chem Phys ; 22(46): 27121-27133, 2020 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-33225339

RESUMO

In this work, the liquid-liquid interfacial properties of methanol plus n-alkane (n-hexane, n-heptane, n-octane) mixtures are investigated at atmospheric pressure by two complementary molecular modelling techniques; namely, molecular dynamic simulations (MD) and density gradient theory (DGT) coupled with the PC-SAFT (perturbed-chain statistical associating fluid theory) equation of state. Furthermore, two molecular models of methanol are used, which are based on a non-polarisable three site approach. On the one hand, is the original (flexible) TraPPE-UA model force field. On the other hand, is the rigid approximation denoted as OPLS/2016. In both cases, n-alkanes are modelled using the TraPPE-UA model. Simulations are performed using the direct coexistence technique in the ensemble. Special attention is paid to the comparison between the estimations obtained from different methanol models, the available experimental data and theoretical calculations. In all cases, the rigid model is capable of predicting the experimental phase equilibrium and interfacial properties accurately. Unsurprisingly, the methanol-rich density and interfacial tension are overestimated using the TraPPE model combined with Lorentz-Berthelot mixing rules for predicting the mixture behaviour. Accurate comparison between MD and DGT plus PC-SAFT requires consideration of the cross-interactions between individual influence parameters and fitting the ßij values. This latter aspect is particularly important because it allows the exploitation of the link between the EOS model and the direct molecular simulation of the corresponding fluid. At the same time, it was demonstrated that the key property defining the interfacial tension value is the absolute concentration of methanol in the methanol-rich phase. This behaviour indicates that there are more hydrogens bonded with each other, and they interact favourably with an increasing number of carbon atoms in the alkane.

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