Estimation of breed effects and non-additive genetic variation for ostrich slaughter and skin traits.

The study quantified breed effects and putative non-additive genetic variation for quantitative and qualitative slaughter and skin traits involving three ostrich breeds: South African Black (SAB), Zimbabwean Blue (ZB), and Kenyan Red (KR) ostriches. Such data from contemporary slaughter groups with all three pure breeds represented were analyzed together (SAB: n = 457; ZB: n = 74; KR: n = 50). Two 2 × 2 diallel crossbreeding designs were used to assess crosses of ZB and KR birds with the SAB strain. Subsequently, the data from SAB, ZB and their reciprocal crosses, slaughtered together; as well as the data from SAB and KR ostriches, along with their reciprocal crosses, respectively, were analyzed separately. ZB and KR birds outperformed SAB birds for most size-related slaughter and skin traits. Linear contrasts were used to distinguish the effects of breed, heterosis, and the dam line. For the ZB x SAB design, additive breed effects were significant for slaughter weight (10.4%), crust skin size (3.9%) and nodule shape score (1.6%) (all P < 0.05). Significant heterosis were found for slaughter weight (4.3%), crust skin size (1.7%) and nodule size score (3.7%) (P < 0.05). Dam line effects were observed for skin weight (4.1%) and hair follicle score (4.1%). In the KR x SAB design, additive breed effects were like outcomes for the ZB x SAB design. Heterosis estimates were significant (P < 0.05) for slaughter weight (5.8%), crust skin size (2.9%), crown length (1.7%) and nodule size score (4.4%). Dam line effects were significant for slaughter weight (3.7%) and nodule size score (3.8%). In conclusion, ZB and KR birds outperformed their SAB contemporaries for size and size-related traits. Crossbreeding with these genotypes could improve some size-related traits over the mid-parent value of purebreds.

Heritable variation in thermal profiles is associated with reproductive success in the world's largest bird.

Organisms inhabiting extreme thermal environments, such as desert birds, have evolved spectacular adaptations to thermoregulate during hot and cold conditions. However, our knowledge of selection for thermoregulation and the potential for evolutionary responses is limited, particularly for large organisms experiencing extreme temperature fluctuations. Here we use thermal imaging to quantify selection and genetic variation in thermoregulation in ostriches (Struthio camelus), the world's largest bird species that is experiencing increasingly volatile temperatures. We found that females who are better at regulating their head temperatures ("thermoregulatory capacity") had higher egg-laying rates under hotter conditions. Thermoregulatory capacity was both heritable and showed signatures of local adaptation: females originating from more unpredictable climates were better at regulating their head temperatures in response to temperature fluctuations. Together these results reveal that past and present evolutionary processes have shaped genetic variation in thermoregulatory capacity, which appears to protect critical organs, such as the brain, from extreme temperatures during reproduction.

Coprophagy rapidly matures juvenile gut microbiota in a precocial bird.

Coprophagy is a behavior where animals consume feces, and has been observed across a wide range of species, including birds and mammals. The phenomenon is particularly prevalent in juveniles, but the reasons for this remain unclear. One hypothesis is that coprophagy enables offspring to acquire beneficial gut microbes that aid development. However, despite the potential importance of this behavior, studies investigating the effects in juveniles are rare. Here we experimentally test this idea by examining how ingestion of adult feces by ostrich chicks affects their gut microbiota development, growth, feeding behavior, pathogen abundance, and mortality. We conducted extensive longitudinal experiments for 8 weeks, repeated over 2 years. It involved 240 chicks, of which 128 were provided daily access to fresh fecal material from adults and 112 were simultaneously given a control treatment. Repeated measures, behavioral observations, and DNA metabarcoding of the microbial gut community, both prior to and over the course of the experiment, allowed us to evaluate multiple aspects of the behavior. The results show that coprophagy causes (a) marked shifts to the juvenile gut microbiota, including a major increase in diversity and rapid maturation of the microbial composition, (b) higher growth rates (fecal-supplemented chicks became 9.4% heavier at 8 weeks old), (c) changes to overall feeding behavior but no differences in feed intake, (d) lower abundance of a common gut pathogen (Clostridium colinum), and (e) lower mortality associated with gut disease. Together, our results suggest that the behavior of coprophagy in juveniles is highly beneficial and may have evolved to accelerate the development of gut microbiota.

The evolutionary maintenance of ancient recombining sex chromosomes in the ostrich.

Sex chromosomes have evolved repeatedly across the tree of life and often exhibit extreme size dimorphism due to genetic degeneration of the sex-limited chromosome (e.g. the W chromosome of some birds and Y chromosome of mammals). However, in some lineages, ancient sex-limited chromosomes have escaped degeneration. Here, we study the evolutionary maintenance of sex chromosomes in the ostrich (Struthio camelus), where the W remains 65% the size of the Z chromosome, despite being more than 100 million years old. Using genome-wide resequencing data, we show that the population scaled recombination rate of the pseudoautosomal region (PAR) is higher than similar sized autosomes and is correlated with pedigree-based recombination rate in the heterogametic females, but not homogametic males. Genetic variation within the sex-linked region (SLR) (π = 0.001) was significantly lower than in the PAR, consistent with recombination cessation. Conversely, genetic variation across the PAR (π = 0.0016) was similar to that of autosomes and dependent on local recombination rates, GC content and to a lesser extent, gene density. In particular, the region close to the SLR was as genetically diverse as autosomes, likely due to high recombination rates around the PAR boundary restricting genetic linkage with the SLR to only ~50Kb. The potential for alleles with antagonistic fitness effects in males and females to drive chromosome degeneration is therefore limited. While some regions of the PAR had divergent male-female allele frequencies, suggestive of sexually antagonistic alleles, coalescent simulations showed this was broadly consistent with neutral genetic processes. Our results indicate that the degeneration of the large and ancient sex chromosomes of the ostrich may have been slowed by high recombination in the female PAR, reducing the scope for the accumulation of sexually antagonistic variation to generate selection for recombination cessation.

Experimental evidence that group size generates divergent benefits of cooperative breeding for male and female ostriches.

Cooperative breeding allows the costs of parental care to be shared, but as groups become larger, such benefits often decline as competition increases and group cohesion breaks down. The counteracting forces of cooperation and competition are predicted to select for an optimal group size, but variation in groups is ubiquitous across cooperative breeding animals. Here, we experimentally test if group sizes vary because of sex differences in the costs and benefits of cooperative breeding in captive ostriches, Struthio camelus, and compare this to the distribution of group sizes in the wild. We established 96 groups with different numbers of males (1 or 3) and females (1, 3, 4, or 6) and manipulated opportunities for cooperation over incubation. There was a clear optimal group size for males (one male with four or more females) that was explained by high costs of competition and negligible benefits of cooperation. Conversely, female reproductive success was maximised across a range of group sizes due to the benefits of cooperation with male and female group members. Reproductive success in intermediate sized groups was low for both males and females due to sexual conflict over the timing of mating and incubation. Our experiments show that sex differences in cooperation and competition can explain group size variation in cooperative breeders.

Being a parent is hard work. The unrelenting demand for food and protection is exhausting. Now imagine being a parent on the hot African savannah. Food and water are scarce, and whenever you leave your offspring, they overheat, or something eats them. This is the reality for ostriches. They, like humans, cope with the challenges of parenthood by sharing childcare responsibilities. Ostriches live in groups, breed in a communal nest, and take it in turns to incubate their eggs. This helps to maximize the survival of their offspring, but it has its downsides. The bigger a group gets, the more its members have to compete over mates and space for their eggs in the nest. The balance between cooperation and competition should, in theory, result in one 'optimal' group size. But this pattern does not seem to hold true: in the wild, ostrich families vary wildly in size and composition. To find out why, Melgar et al. set up dozens of groups of breeding ostriches and gave them different opportunities to cooperate. For males, there was one group size that maximized the number of offspring they produced (reproductive success): a single male with four or more females. Males did not benefit much from cooperation, and suffered greatly from competing with other males for mates. For females, however, the story was different. They benefited much more than males from cooperation and did best in bigger groups where they could share egg care with other individuals. Middle-sized groups were not good for either sex because reproduction was hard to coordinate: males continued to pursue copulations after females had initiated incubation, resulting in eggs being exposed and broken. The different priorities of males and females explain why there is no single optimal group size for ostriches. How groups balance competition and cooperation is a fundamental question in biology. Why do some organisms prefer to live alone, while others thrive in large groups? Understanding more about the balance of priorities within a group could hold the answers. It could also help to inform conservation work and animal breeding by showing how different social pressures influence breeding success.

Evolutionary trade-offs between heat and cold tolerance limit responses to fluctuating climates.

The evolutionary potential of species to cope with short-term temperature fluctuations during reproduction is critical to predicting responses to future climate change. Despite this, vertebrate research has focused on reproduction under high or low temperatures in relatively stable temperate climates. Here, we characterize the genetic basis of reproductive thermal tolerance to temperature fluctuations in the ostrich, which lives in variable environments in tropical and subtropical Africa. Both heat and cold tolerance were under selection and heritable, indicating the potential for evolutionary responses to mean temperature change. However, we found evidence for a negative, genetic correlation between heat and cold tolerance that should limit the potential for adaptation to fluctuating temperatures. Genetic constraints between heat and cold tolerance appear a crucial, yet underappreciated, factor influencing responses to climate change.

Mass Sperm Motility Is Correlated to Sperm Motility as Measured by Computer-Aided Sperm Analysis (CASA) Technology in Farmed Ostriches.

Semen analyses have gained momentum in various livestock industries. However, in farmed ostriches, semen analysis is still in its experimental stage, and males are not screened for sperm quality before breeding. This study investigated the correlations between computer-aided sperm analysis (CASA) technology and the traditional, yet affordable, mass sperm motility score. Semen was collected from nine South African Black ostrich males (mean age ± SD: 5.25 ± 1.21 years), using the dummy female method for 5 consecutive days monthly, for 8 months. Mass sperm motility scores were recorded on a scale of 1−5 (1: little to no sperm movement; 5: rapid sperm movement). The CASA traits recorded were: total motility (MOT), progressive motility (PMOT), curve−linear velocity (VCL), straight-line velocity (VSL), average path velocity (VAP), amplitude of lateral head displacement (ALH), linearity (LIN), straightness (STR), wobble (WOB), and beat-cross frequency (BCF). The results revealed positive correlations between mass sperm motility and PMOT, MOT, VCL, and VAP ranging from 0.34 to 0.59 (p < 0.0001). In contrast, negative correlations were recorded between mass sperm motility and LIN, STR, and BCF, with correlations ranging from −0.20 to −0.39 (p < 0.0001). VSL, ALH, and WOB were not correlated to mass sperm motility (p > 0.05). Ostrich farmers may thus be able to evaluate sperm motility reliably and potentially select breeding males by using the affordable mass sperm motility scoring method. Determining the correlation between these methods and fertility after artificial insemination or natural mating is however needed.

Minimum sperm dose for optimal fertility after artificial insemination in ostriches.

Artificial insemination (AI) in ostriches may present potential solutions to high proportions of infertile eggs commonly recorded on commercial farms and assist in reducing the number of males for breeding purposes thereby leading to a more economical and efficient farming system. Although non-invasive methods to collect semen and to artificially inseminate female ostriches have been developed, the insemination dose for maximum fertility of eggs remains unknown. This study was thus conducted to determine the minimum sperm dose that would promote fertility of eggs following AI in female ostriches. A total of 22 South African black ostriches (7 males and 15 females) aged between 2 and 9 years old were used. Semen samples were collected using the dummy female method and diluted 1:4 (semen: diluent) with an ostrich specific semen diluent. Females were inseminated with various sperm doses of diluted semen from the same male three times a week, every second day resulting in a total sperm dose of A: <2.5 × 109, B: 2.5-5 × 109, C: 5-7.5 × 109 and D: 7.5-9.6 × 109 sperm/week. Eggs produced after insemination were opened to determine the fertilization status of the germinal disc (GD) with an unaided eye. The fertile period was then calculated as the number of days fertilized eggs were laid after the last AI. Furthermore, the number of sperm trapped in the outer perivitelline membrane (spermOPVL) above the GD region was counted under fluorescent light, following staining with 4',6-diamidino-2-phenylindole to determine the rate of sperm loss and the number of days up to when the last egg containing sperm was laid. On average, a mean (±sd) of 35.34 ± 25.72% eggs produced after AI were fertilized. Fertility was lower (mean ± se) when sperm dose A was used (6.71 ± 9.40%), as compared to sperm dose B (46.01 ± 6.71%), C (37.34 ± 6.60%) and D (37.75 ± 8.36%) (P < 0.05). No significant difference was recorded in the latter three doses (P > 0.05). Furthermore, the length of the fertile period and the rate of sperm loss did not differ significantly between sperm doses (P > 0.05). Hence, a sperm dose of between 2.5 and 5 × 109 sperm/week is recommended to optimize fertility after AI in ostriches, as increasing the sperm dose would not benefit fertility. Further studies are, however, needed to determine the frequency of insemination that would maintain fertility throughout the breeding season as well as hatchability of eggs laid after AI.

The genomic structure of isolation across breed, country and strain for important South African and Australian sheep populations.

BACKGROUND: South Africa and Australia shares multiple important sheep breeds. For some of these breeds, genomic breeding values are provided to breeders in Australia, but not yet in South Africa. Combining genomic resources could facilitate development for across country selection, but the influence of population structures could be important to the compatability of genomic data from varying origins. The genetic structure within and across breeds, countries and strains was evaluated in this study by population genomic parameters derived from SNP-marker data. Populations were first analysed by breed and country of origin and then by subpopulations of South African and Australian Merinos. RESULTS: Mean estimated relatedness according to the genomic relationship matrix varied by breed (-0.11 to 0.16) and bloodline (-0.08 to 0.06) groups and depended on co-ancestry as well as recent genetic links. Measures of divergence across bloodlines (FST: 0.04-0.12) were sometimes more distant than across some breeds (FST: 0.05-0.24), but the divergence of common breeds from their across-country equivalents was weak (FST: 0.01-0.04). According to mean relatedness, FST, PCA and Admixture, the Australian Ultrafine line was better connected to the SA Cradock Fine Wool flock than with other AUS bloodlines. Levels of linkage disequilibrium (LD) between adjacent markers was generally low, but also varied across breeds (r2: 0.14-0.22) as well as bloodlines (r2: 0.15-0.19). Patterns of LD decay was also unique to breeds, but bloodlines differed only at the absolute level. Estimates of effective population size (Ne) showed genetic diversity to be high for the majority of breeds (Ne: 128-418) but also for bloodlines (Ne: 137-369). CONCLUSIONS: This study reinforced the genetic complexity and diversity of important sheep breeds, especially the Merino breed. The results also showed that implications of isolation can be highly variable and extended beyond breed structures. However, knowledge of useful links across these population substructures allows for a fine-tuned approach in the combination of genomic resources. Isolation across country rarely proved restricting compared to other structures considered. Consequently, research into the accuracy of across-country genomic prediction is recommended.

The effect of tree shade on ambient conditions and heat stress indicator traits of new-born South African Mutton Merino and Dormer lambs: Preliminary results.

This preliminary study investigated the provision of shade on heat stress indicators of South African Mutton Merino (SAMM) and Dormer lambs shortly after birth, during the autumn 2017 and 2018 lambing seasons. Newborn lambs were assessed to determine whether welfare, as assessed by respiratory response and rectal temperature as heat stress indicators, survival and early growth benefitted from the provision of shade. Groups consisting of 4-17 pregnant SAMM and Dormer ewes were randomly allocated to 5-10 paddocks with natural shade from trees and 5-9 paddocks that were directly in the sun with no shade available. The lambs were recorded within 24 h of birth at noon. Climate data were obtained from a nearby weather station. The lambs were also weighed at 12 (SD = 2) days of age at tail-docking. Tree shade had a moderating effect on temperature, resulting in lower maximum daytime and higher minimum night-time temperatures. There was an interaction between a temperature-humidity index (THI) and the treatments (access to shade or no access to shade) for respiration and rectal temperature (P < 0.01). Both traits were relatively unaffected by the THI at values below 77. Unshaded lambs exhibited a pronounced upwards trend following a THI-threshold of 77-78. Tailing weight tended to be higher while lamb survival of live-born lambs to tail-docking was lower in lambs born in shaded paddocks but these trends did not persist to weaning. Shade is needed to enhance animal welfare by alleviating the effect of high THI-values on hot days in an autumn lambing season.

Long term genetic selection for reproductive success affects neonatal lamb vitality across cold stress conditions.

Adverse weather conditions are important contributors to mortality in new-born lambs. Previous studies have shown variation between lambs in their ability to cope with circumstances of cold stress, and genetic selection could be a viable option for improving animal robustness. The Elsenburg Merino flock was divergently selected on number of lambs weaned (NLW). This resulted in divergent responses in reproduction and lamb survival. This study evaluated lamb vitality and mortality of positively selected H-Line relative to the negatively selected L-Line in response to cold stress. Traits included lamb rectal temperature (RT), surface temperature (ST), shiver score (SS), lamb vigor score (LVS), breaths per minute (BPM), mortality to three days of age (M3) and to weaning (TM). Cold stress was described by a chill index derived from daily rainfall, wind speed and ambient temperature, and represented as the mean of the one (CI), two (CI-2) or three (CI-3) days since parturition. Overall, H-Line lambs had a higher neonatal RT and were less likely to succumb than L-Line contemporaries. In a significant (P < 0.05) interaction, the predicted RT of L-Line showed a non-linear decline with increased levels of CI-2, while H-Line lambs better maintained their core temperature. M3 was also affected by a significant interaction between CI-3 and selection line, further suggesting that observed lower mortality rates in the H-Line depends on H-Line lambs' improved ability to cope with stressful environments. Long term selection for NLW in the H-Line led to improvements in both adaptations associated with lower lamb losses. The continued recording of viability traits to produce larger datasets amenable to genetic analysis is recommended, specifically for rectal temperature.

Expression of cytokine genes at tick attachment and control sites of Namaqua Afrikaner, Dorper and South African Mutton Merino sheep.

Cytokines are immune response components important in innate immunity and inflammatory response. They are harnessed as part of local immunological responses by animals to combat local infections and/or infestations. This study investigated expression of four selected cytokine genes, namely, interleukin 1 beta (IL-1ß), chemokine C-C ligand 2 (CCL2), chemokine C-C ligand 26 (CCL26) and interleukin 8 (IL-8), at tick attachment and control sites in a South African indigenous sheep breed the Namaqua Afrikaner (NA) and two commercial breeds, the Dorper and South African Mutton Merino (SAMM). The NA was previously shown to be more resistant to infestation by ticks than the two commercial breeds. NA ewes expressed IL-1ß more at tick attachment sites compared to Dorpers. The NA breed was also more likely to upregulate the expression of the CCL2, CCL26 and IL-8 genes at tick attachment sites compared to control sites than the other breeds. The results of this study gave an indication that cytokines are involved in immune responses to tick challenge and laid a foundation for further studies under controlled challenge conditions.

The effect of dilution rate and successive semen collections on sperm quality and sexual motivation of sexually mature South African Merino rams.

This study investigated whether dilution rate and successive semen collections influenced sperm viability, morphology, motility and male sexual motivation in sexually mature South African Merino rams (SAMR). Semen was collected from 11 rams up to either sperm or behavioural exhaustion. Semen was then immediately serial diluted to make 0, 2, 4, 8 and 16× dilutions with Hams F10 diluent. Following dilution, sperm motility was evaluated using computer-assisted sperm analysis (SCA®), while sperm morphology and viability were assessed using nigrosin-eosin staining and SYBR14/PI, respectively. Male sexual motivation was recorded by reaction time to first mount, while male dexterity was calculated as the ratio of mounts to ejaculations. An increase of dilution rate did not affect sperm motility (P > 0.05) but resulted in a significant decrease in the percentage of live normal sperm (P < 0.05). Furthermore, while sperm concentration and number decreased with semen collection number (P < 0.05), no effect was detected on sperm viability, morphology and motility (P > 0.05), except for average curvilinear velocity which showed a biphasic trend (P < 0.05). Mating success and reaction time were negatively affected by successive semen collections (P < 0.05), while male dexterity was unaffected (P > 0.05). Nevertheless, relatively high numbers of motile sperm (>2 billion) were collected up to the 4th successive semen collection, with a short initial reaction period (<25 s) and good success rate (>65%). SAMR thus withstood frequent semen collections without affecting their sperm reserves or sexual motivation. Further studies are required to investigate optimal conditions for semen collection and artificial insemination in this breed.

Extreme temperatures compromise male and female fertility in a large desert bird.

Temperature has a crucial influence on the places where species can survive and reproduce. Past research has primarily focused on survival, making it unclear if temperature fluctuations constrain reproductive success, and if so whether populations harbour the potential to respond to climatic shifts. Here, using two decades of data from a large experimental breeding programme of the iconic ostrich (Struthio camelus) in South Africa, we show that the number of eggs females laid and the number of sperm males produced were highly sensitive to natural temperature extremes (ranging from -5 °C to 45 °C). This resulted in reductions in reproductive success of up to 44% with 5 °C deviations from their thermal optimum. In contrast, gamete quality was largely unaffected by temperature. Extreme temperatures also did not expose trade-offs between gametic traits. Instead, some females appeared to invest more in reproducing at high temperatures, which may facilitate responses to climate change. These results show that the robustness of fertility to temperature fluctuations, and not just temperature increases, is a critical aspect of species persistence in regions predicted to undergo the greatest change in climate volatility.

Early-life gut dysbiosis linked to juvenile mortality in ostriches.

BACKGROUND: Imbalances in the gut microbial community (dysbiosis) of vertebrates have been associated with several gastrointestinal and autoimmune diseases. However, it is unclear which taxa are associated with gut dysbiosis, and if particular gut regions or specific time periods during ontogeny are more susceptible. We also know very little of this process in non-model organisms, despite an increasing realization of the general importance of gut microbiota for health. METHODS: Here, we examine the changes that occur in the microbiome during dysbiosis in different parts of the gastrointestinal tract in a long-lived bird with high juvenile mortality, the ostrich (Struthio camelus). We evaluated the 16S rRNA gene composition of the ileum, cecum, and colon of 68 individuals that died of suspected enterocolitis during the first 3 months of life (diseased individuals), and of 50 healthy individuals that were euthanized as age-matched controls. We combined these data with longitudinal environmental and fecal sampling to identify potential sources of pathogenic bacteria and to unravel at which stage of development dysbiosis-associated bacteria emerge. RESULTS: Diseased individuals had drastically lower microbial alpha diversity and differed substantially in their microbial beta diversity from control individuals in all three regions of the gastrointestinal tract. The clear relationship between low diversity and disease was consistent across all ages in the ileum, but decreased with age in the cecum and colon. Several taxa were associated with mortality (Enterobacteriaceae, Peptostreptococcaceae, Porphyromonadaceae, Clostridium), while others were associated with health (Lachnospiraceae, Ruminococcaceae, Erysipelotrichaceae, Turicibacter, Roseburia). Environmental samples showed no evidence of dysbiosis-associated bacteria being present in either the food, water, or soil substrate. Instead, the repeated fecal sampling showed that pathobionts were already present shortly after hatching and proliferated in individuals with low microbial diversity, resulting in high mortality several weeks later. CONCLUSIONS: Identifying the origins of pathobionts in neonates and the factors that subsequently influence the establishment of diverse gut microbiota may be key to understanding dysbiosis and host development. Video Abstract.

The Effects of Production System and Sex on the Sensory Quality Characteristics of Dorper Lamb.

The effect of production systems on the sensory quality characteristics of Dorper lambs was investigated. Sixty lambs (ewes, rams, castrates) were allocated into two production groups (feedlot or free-range) at weaning with equal numbers of each sex represented in each group. The lambs were fed for five (slaughter group 1) or six (slaughter group 2) weeks. Feedlot lambs were fed a commercial pelleted diet while free-range lambs utilized natural shrub pastures. Samples of the Longissimus thoracis muscle were used for sensory evaluation. Feedlot lambs produced meat that was juicier and more tender than meat from free-range lambs. Initial juiciness was also higher in the meat from the feedlot lambs. No aroma or flavour differences were observed. The meat from the free-range ram lambs (slaughter group 1) was the least tender, whereas the lamb flavour was also compromised in the free-range ram lambs. Free-range meat may not necessarily be distinguished from feedlot meat as far as aroma and flavour are concerned.

Extensive human presence and regular gentle handling improve growth, survival and immune competence in ostrich chicks.

A total of 416 day-old ostrich chicks were randomly allocated to one of the three different husbandry practices for 3 months after hatch; HP1 (extensive human presence with gentle human voice, visual and gentle physical stimuli), HP2 (similar to HP1 but without physical stimuli) and S (human presence limited to supply of feed and water). Chick weight (kg) was measured at 6 and 12 weeks of age, while mortalities were recorded daily to calculate the survival rate. Finally, chicks' antibody responses to vaccination against Newcastle disease (NCD) was measured using the Hemagglutination-Inhibition (HI) test at 20 weeks of age. While HP1 chicks were heavier and survived better to 6 weeks of age than HP2 and S chicks (p < .05), no difference was observed thereafter (p > .05). Furthermore, HP1 chicks had an improved immune competence, as illustrated by their lower percentage of positive HI titers, compared to HP2 and S chicks (p < .05). Hence, integrating extensive human presence with positive human-chick interactions may assist in alleviating challenges related to chick rearing in the ostrich industry.

Major shifts in gut microbiota during development and its relationship to growth in ostriches.

The development of gut microbiota during ontogeny is emerging as an important process influencing physiology, immunity and fitness in vertebrates. However, knowledge of how bacteria colonize the juvenile gut, how this is influenced by changes in the diversity of gut bacteria and to what extent this influences host fitness, particularly in nonmodel organisms, is lacking. Here we used 16S rRNA gene sequencing to describe the successional development of the faecal microbiome in ostriches (Struthio camelus, n = 66, repeatedly sampled) over the first 3 months of life and its relationship to growth. We found a gradual increase in microbial diversity with age that involved multiple colonization and extinction events and a major taxonomic shift in bacteria that coincided with the cessation of yolk absorption. Comparisons with the microbiota of adults (n = 5) revealed that the chicks became more similar in their microbial diversity and composition to adults as they aged. There was a five-fold difference in juvenile growth during development, and growth during the first week of age was strongly positively correlated with the abundance of the genus Bacteroides and negatively correlated with Akkermansia. After the first week, the abundances of six phylogenetically diverse families (Peptococcaceae, S24-7, Verrucomicrobiae, Anaeroplasmataceae, Streptococcaceae, Methanobacteriaceae) were associated with subsequent reductions in chick growth in an age-specific and transient manner. These results have broad implications for our understanding of the development of gut microbiota and its associations with animal growth.