Global inventory of species categorized by known underwater sonifery.

A working group from the Global Library of Underwater Biological Sounds effort collaborated with the World Register of Marine Species (WoRMS) to create an inventory of species confirmed or expected to produce sound underwater. We used several existing inventories and additional literature searches to compile a dataset categorizing scientific knowledge of sonifery for 33,462 species and subspecies across marine mammals, other tetrapods, fishes, and invertebrates. We found 729 species documented as producing active and/or passive sounds under natural conditions, with another 21,911 species deemed likely to produce sounds based on evaluated taxonomic relationships. The dataset is available on both figshare and WoRMS where it can be regularly updated as new information becomes available. The data can also be integrated with other databases (e.g., SeaLifeBase, Global Biodiversity Information Facility) to advance future research on the distribution, evolution, ecology, management, and conservation of underwater soniferous species worldwide.

The importance of context in the acoustic behaviors of marine, subtropical fish speciesa).

Despite the importance of acoustic signaling in fishes, the prevalence of the behavioral contexts associated with their active (i.e., intentional) sound production remains unclear. A systematized review was conducted to explore documented acoustic behaviors in marine, subtropical fishes and potential influences affecting their relative pervasiveness. Data were collected on 186 actively soniferous fish species studied across 194 publications, identified based on existing FishSounds and FishBase datasets. Disturbance was the most common behavioral context associated with active sound production-reported for 140 species or 75% of the species studied-and then aggression (n = 46 species, 25%) and reproduction (n = 34 species, 18%). This trend, however, somewhat differed when examined by research effort, study environment, and fish family, such as reproductive sounds being more commonly reported by studies conducted in the wild. The synthesis of fish sound production behaviors was in some ways stymied by the fact that many species' sound production did not have discernible associated behavioral contexts and that some investigations did not clearly identify the study environments in which active sound production was observed. These findings emphasize the importance of context-behavioral or otherwise-when studying acoustic behaviors in fishes.

Dead but not forgotten: complexity of Acropora palmata colonies increases with greater composition of dead coral.

Coral reefs are highly biodiverse ecosystems that have declined due to natural and anthropogenic stressors. Researchers often attribute reef ecological processes to corals' complex structure, but effective conservation requires disentangling the contributions of coral versus reef structures. Many studies assessing the relationships between reef structure and ecological dynamics commonly use live coral as a proxy for reef complexity, disregarding the contribution of dead coral skeletons to reef habitat provision or other biogeochemical reef dynamics. This study aimed to assess the contribution of dead coral to reef complexity by examining structural variations in live and dead Acropora palmata colonies. We used photogrammetry to reconstruct digital elevation models (DEMs) and orthomosaics of the benthic region immediately surrounding 10 A. palmata colonies. These reconstructions were used to quantify structural metrics, including surface rugosity, fractal dimension, slope, planform curvature, and profile curvature, as a function of benthic composition (i.e., live A. palmata, dead A. palmata, or non-A. palmata substrate). The results revealed that dead coral maintained more varied profile curvatures and higher fractal dimensions than live or non-coral substrate. Conversely, A. palmata colonies with a higher proportion of live coral displayed more uniform structure, with lower fractal dimensions and less variability in profile curvature measures. Other metrics showed no significant difference among substrate types. These findings provide novel insights into the structural differences between live and dead coral, and an alternative perspective on the mechanisms driving the observed structural complexity on reefs. Overall, our results highlight the overlooked potential contributions of dead coral to reef habitat provision, ecological processes, and other biogeochemical reef dynamics, and could have important implications for coral reef conservation.

Large size (>100-µm) microplastics are not biomagnifying in coastal marine food webs of British Columbia, Canada.

Microplastics (MPs) contamination in marine environments is of increasing concern, as plastic particles are globally ubiquitous across ecosystems. A large variety of aquatic taxa ingest MPs, but the extent to which animals accumulate and transfer MPs through food webs is largely unknown. In this study, we quantified MP uptake in bivalves, crabs, echinoderms, and fish feeding at different trophic levels at three sites on southern Vancouver Island. We paired stable-isotope food web analysis with MP concentrations in digestive tracts across all trophic levels and in fish livers. We then used Bayesian generalized linear mixed models to explore whether bioaccumulation and biomagnification were occurring. Our results showed that MPs (100-5000 µm along their longest dimension) are not biomagnifying in marine coastal food webs, with no correlation between the digestive tract or fish liver MP concentrations and trophic position of the various species. Ecological traits did, however, affect microplastic accumulation in digestive tracts, with suspension feeder and smaller-bodied planktivorous fish ingesting more MPs by body weight. Trophic transfer occurred between prey and predator for rockfish, but higher concentrations in full stomachs compared with empty ones suggested rapid excretion of ingested MPs. Collectively, our findings suggested the movement of MP through marine food webs is facilitated by species-specific mechanisms, with contamination susceptibility a function of species biology, not trophic position. Furthermore, the statistical methods we employ, including machine learning for classifying unknown particles and a probabilistic way to account for background contamination, are universally applicable to the study of microplastics. Our findings advance understanding of how MPs enter and move through aquatic food webs, suggesting that lower-trophic-level animals are more at risk of ingesting >100-µm MPs, relative to higher-trophic-level animals. Our work also highlights the need to advance the study of <100-µm MPs, which are still poorly understood and may need to be considered separately in ecological risk assessments.

Regional heterogeneity in coral species richness and hue reveals novel global predictors of reef fish intra-family diversity.

Habitat heterogeneity shapes biological communities, a well-known process in terrestrial ecosystems but substantially unresolved within coral reef ecosystems. We investigated the extent to which coral richness predicts intra-family fish richness, while simultaneously integrating a striking aspect of reef ecosystems-coral hue. To do so, we quantified the coral richness, coral hue diversity, and species richness within 25 fish families in 74 global ecoregions. We then expanded this to an analysis of all reef fishes (4465 species). Considering coral bleaching as a natural experiment, we subsequently examined hue's contribution to fish communities. Coral species and hue diversity significantly predict each family's fish richness, with the highest correlations (> 80%) occurring in damselfish, butterflyfish, emperors and rabbitfish, lower (60-80%) in substrate-bound and mid-water taxa such as blennies, seahorses, and parrotfish, and lowest (40-60%) in sharks, morays, grunts and triggerfish. The observed trends persisted globally. Coral bleaching's homogenization of reef colouration revealed hue's contribution to maintaining fish richness, abundance, and recruit survivorship. We propose that each additional coral species and associated hue provide added ecological opportunities (e.g. camouflage, background contrast for intraspecific display), facilitating the evolution and co-existence of diverse fish assemblages.

A Bayesian analysis of the factors determining microplastics ingestion in fishes.

Microplastic particles (MPs) occur widely in aquatic ecosystems and are ingested by a wide range of organisms. While trophic transfer of MPs is known to occur, researchers do not yet fully understand the fate of MPs in food webs. We explored the factors influencing reported ingestion of MPs in marine and freshwater fishes by conducting a literature review of 123 studies published between January 2011 and June 2020. We used Bayesian generalized linear mixed models to determine whether MP ingestion by fishes varies by Food and Agricultural Organization fishing area, trophic level, body size, taxa, and study methodology. After accounting for methodology, strong regional differences were not present, although ingested MP concentrations were slightly different among some FAO areas. According to the reviewed studies, MP concentrations in fish digestive tracts did not increase with either trophic level or body size, suggesting that biomagnification of MPs did not occur, although larger fish were more likely to contain MPs. Researchers reported higher concentrations of MPs in clupeids compared with other commonly studied taxonomic families, which could be due to their planktivorous feeding strategy. Methodology played an influential role in predicting reported concentrations, highlighting the need to harmonize methods among studies.

The sources and prevalence of anthropogenic noise in Rockfish Conservation Areas with implications for marine reserve planning.

Underwater noise pollution is a recognized threat to marine life. In British Columbia, Canada, Pacific rockfish (Sebastes spp.) were historically overfished, prompting the establishment of Rockfish Conservation Areas (RCAs). However, there are no restrictions prohibiting vessel transits in RCAs. We hypothesized that RCAs do not protect rockfish from sub-lethal harm from noise. We compared noise levels at three RCAs with adjacent unprotected reference sites from August 2018-June 2019. While RCAs had lower levels of noise overall than reference sites, this trend was inconsistent; some RCA sites had higher levels of noise during certain time periods than non-RCA sites. A vessel noise detector was the best predictor of noise level over three frequency bands (20-100 Hz, 100-1000 Hz, 1-10 kHz), and predicted sound levels which could mask rockfish communication. We conclude that RCAs do not reliably protect rockfish from noise pollution, and recommend further study into potential impacts on stock recovery.

Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef.

Chronic disturbance can disrupt ecological interactions including the foundational symbiosis between reef-building corals and the dinoflagellate family Symbiodiniaceae. Symbiodiniaceae are photosynthetic endosymbionts necessary for coral survival, but many Symbiodiniaceae can also be found free-living in the environment. Since most coral species acquire new Symbiodiniaceae from the environment each generation, free-living Symbiodiniaceae represent important pools for coral symbiont acquisition. Yet, little is known about the diversity of, or impacts of disturbance on, free-living Symbiodiniaceae. To determine how chronic and pulse disturbances influence Symbiodiniaceae communities, we sampled three reef habitat compartments - sediment, water, and coral (Pocillopora grandis, Montipora aequituberculata, Porites lobata) - at sites exposed to different levels of chronic anthropogenic disturbance, before, during, and after a major storm. Almost no (4%) Symbiodiniaceae amplicon sequence variants (ASVs) were found in all three compartments, and over half were found uniquely in coral. Sites experiencing chronic disturbance were typically associated with higher symbiont beta diversity (i.e., variability and turnover) across reef habitat compartments. Pulse stress, from the storm, exhibited some influence on symbiont beta diversity but the effect was inconsistent. This suggests that in this ecosystem, the effects of chronic disturbance are more prominent than temporal variability during a pulse disturbance for shaping symbiont communities.

Differences in δ15 N and δ13 C between embryonic and maternal tissues of the ovoviviparous bluntnose sixgill shark Hexanchus griseus.

Stable nitrogen (δ15 N) and carbon (δ13 C) isotope ratios from muscle, liver and yolk were analysed from the mother and embryos of an ovoviviparous shark, Hexanchus griseus. Embryonic liver and muscle had similar δ15 N and δ13 C ratios or were depleted in heavy isotopes, compared to the same maternal somatic and reproductive yolk tissues, but no relationship existed between δ15 N or δ13 C and embryo length, as expected, because a switch to placental nourishment is lacking in this species. This study expands the understanding of maternal nourishment and embryonic stable isotope differences in ovoviviparous sharks.

FishCam: A low-cost open source autonomous camera for aquatic research.

We describe the "FishCam", a low-cost ( < 500 USD) autonomous camera package to record videos and images underwater. The system is composed of easily accessible components and can be programmed to turn ON and OFF on customizable schedules. Its 8-megapixel camera module is capable of taking 3280 × 2464-pixel images and videos. An optional buzzer circuit inside the pressure housing allows synchronization of the video data from the FishCam with passive acoustic recorders. Ten FishCam deployments were performed along the east coast of Vancouver Island, British Columbia, Canada, from January to December 2019. Field tests demonstrate that the proposed system can record up to 212 h of video data over a period of at least 14 days. The FishCam data collected allowed us to identify fish species and observe species interactions and behaviors. The FishCam is an operational, easily-reproduced and inexpensive camera system that can help expand both the temporal and spatial coverage of underwater observations in ecological research. With its low cost and simple design, it has the potential to be integrated into educational and citizen science projects, and to facilitate learning the basics of electronics and programming.

Commentary on: Abundance and distribution of microplastics within surface sediments of a key shellfish growing region of Canada.

This formal comment is in response to "Abundance and distribution of microplastics within surface sediments of a key shellfish growing region of Canada" written by Kazmiruk and colleagues in 2018. This article presents microplastics concentrations in sediment, primarily microbeads, within Baynes Sound, British Columbia, which are some of the highest that have been reported anywhere in the world. The authors cite the local shellfish industry as the likely source of this high degree of contamination and present the industry as a substantial risk to the environment. However, the authors do not sufficiently justify the efficacy of their methodology, and there are several flaws which call into question the legitimacy of their findings. In this commentary, we address the microplastic abundances reported by the authors, and methodological concerns. Furthermore, we provide additional data to elucidate some of this study's more contentious findings. Specifically, we seek to clarify the visual identification of microbeads and microfibres, and the microplastic concentration within shellfish populations, water, and sediment, within the Baynes Sound shellfish growing region.

Human Consumption of Microplastics.

Microplastics are ubiquitous across ecosystems, yet the exposure risk to humans is unresolved. Focusing on the American diet, we evaluated the number of microplastic particles in commonly consumed foods in relation to their recommended daily intake. The potential for microplastic inhalation and how the source of drinking water may affect microplastic consumption were also explored. Our analysis used 402 data points from 26 studies, which represents over 3600 processed samples. Evaluating approximately 15% of Americans' caloric intake, we estimate that annual microplastics consumption ranges from 39000 to 52000 particles depending on age and sex. These estimates increase to 74000 and 121000 when inhalation is considered. Additionally, individuals who meet their recommended water intake through only bottled sources may be ingesting an additional 90000 microplastics annually, compared to 4000 microplastics for those who consume only tap water. These estimates are subject to large amounts of variation; however, given methodological and data limitations, these values are likely underestimates.

Sound the alarm: A meta-analysis on the effect of aquatic noise on fish behavior and physiology.

The aquatic environment is increasingly bombarded by a wide variety of noise pollutants whose range and intensity are increasing with each passing decade. Yet, little is known about how aquatic noise affects marine communities. To determine the implications that changes to the soundscape may have on fishes, a meta-analysis was conducted focusing on the ramifications of noise on fish behavior and physiology. Our meta-analysis identified 42 studies that produced 2,354 data points, which in turn indicated that anthropogenic noise negatively affects fish behavior and physiology. The most predominate responses occurred within foraging ability, predation risk, and reproductive success. Additionally, anthropogenic noise was shown to increase the hearing thresholds and cortisol levels of numerous species while tones, biological, and environmental noise were most likely to affect complex movements and swimming abilities. These findings suggest that the majority of fish species are sensitive to changes in the aquatic soundscape, and depending on the noise source, species responses may have extreme and negative fitness consequences. As such, this global synthesis should serve as a warning of the potentially dire consequences facing marine ecosystems if alterations to aquatic soundscapes continue on their current trajectory.

Community assessment techniques and the implications for rarefaction and extrapolation with Hill numbers.

Diversity estimates play a key role in ecological assessments. Species richness and abundance are commonly used to generate complex diversity indices that are dependent on the quality of these estimates. As such, there is a long-standing interest in the development of monitoring techniques, their ability to adequately assess species diversity, and the implications for generated indices. To determine the ability of substratum community assessment methods to capture species diversity, we evaluated four methods: photo quadrat, point intercept, random subsampling, and full quadrat assessments. Species density, abundance, richness, Shannon diversity, and Simpson diversity were then calculated for each method. We then conducted a method validation at a subset of locations to serve as an indication for how well each method captured the totality of the diversity present. Density, richness, Shannon diversity, and Simpson diversity estimates varied between methods, despite assessments occurring at the same locations, with photo quadrats detecting the lowest estimates and full quadrat assessments the highest. Abundance estimates were consistent among methods. Sample-based rarefaction and extrapolation curves indicated that differences between Hill numbers (richness, Shannon diversity, and Simpson diversity) were significant in the majority of cases, and coverage-based rarefaction and extrapolation curves confirmed that these dissimilarities were due to differences between the methods, not the sample completeness. Method validation highlighted the inability of the tested methods to capture the totality of the diversity present, while further supporting the notion of extrapolating abundances. Our results highlight the need for consistency across research methods, the advantages of utilizing multiple diversity indices, and potential concerns and considerations when comparing data from multiple sources.