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1.
J Mol Microbiol Biotechnol ; 13(1-3): 45-54, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17693712

RESUMO

The in silico analysis of the amino acid sequences deduced from the complete genome sequence of Staphylococcus aureus suggested the presence of two protein tyrosine kinase activities, each split into two distinct polypeptides, respectively Cap5A1/Cap5B1 and Cap5A2/Cap5B2, like in some other Gram-positive bacteria. To check this prediction, the corresponding genes were cloned and overexpressed, and the four corresponding proteins were purified by affinity chromatography and assayed for phosphorylating activity in vitro. Individually, none of them was found to autophosphorylate. However, when Cap5B2 was incubated in the presence of Cap5A2 or, with a larger efficiency, in the presence of Cap5A1, this protein exhibited intensive autokinase activity, occurring selectively at tyrosine residues. On the other hand, whatever the protein combination assayed, Cap5B1 did not present any phosphorylating activity. In search of a possible role for the phosphorylation reaction mediated by Cap5B2, an endogenous substrate of this kinase was characterized. This substrate, termed Cap5O, is the enzyme UDP-acetyl-mannosamine dehydrogenase involved in the cascade of reactions leading to the synthesis of the bacterial capsule. It represents the first endogenous substrate for a tyrosine kinase activity so far identified in S. aureus. The analysis of its dehydrogenase activity showed that it was positively controlled by its phosphorylation at tyrosine.


Assuntos
Proteínas de Bactérias/metabolismo , Proteínas Tirosina Quinases/metabolismo , Staphylococcus aureus/enzimologia , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Desidrogenases de Carboidrato/genética , Desidrogenases de Carboidrato/metabolismo , Eletroforese , Isoenzimas/genética , Isoenzimas/metabolismo , Dados de Sequência Molecular , Fosforilação , Fosfosserina/metabolismo , Fosfotreonina/metabolismo , Fosfotirosina/metabolismo , Proteínas Tirosina Quinases/genética , Homologia de Sequência de Aminoácidos , Staphylococcus aureus/genética , Staphylococcus aureus/metabolismo , Especificidade por Substrato
2.
Comp Biochem Physiol B Biochem Mol Biol ; 131(1): 103-12, 2002 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-11742763

RESUMO

Two proteins of Klebsiella pneumoniae, termed Yor5 and Yco6, were analyzed for their capacity to participate in the reversible phosphorylation of proteins on tyrosine. First, protein Yco6 was overproduced from its specific gene and purified to homogeneity by affinity chromatography. Upon incubation in the presence of radioactive adenosine triphosphate, it was found to effectively autophosphorylate. Two-dimensional analysis of its phosphoamino acid content revealed that it was modified exclusively at tyrosine. Second, protein Yor5 was also overproduced from the corresponding gene and purified to homogeneity by affinity chromatography. It was shown to contain a phosphatase activity capable of cleaving the synthetic substrate p-nitrophenyl phosphate into p-nitrophenol and free phosphate. In addition, it was assayed on individual phosphorylated amino acids and appeared to dephosphorylate specifically phosphotyrosine, with no effect on phosphoserine or phosphothreonine. Such specificity for phosphotyrosine was confirmed by the observation that Yor5 was able to dephosphorylate protein Yco6 previously autophosphorylated. Together, these data demonstrate that similarly to other bacterial species including Acinetobacter johnsonii and Escherichia coli, the cells of K. pneumoniae contain both a protein-tyrosine kinase and a phosphotyrosine-protein phosphatase. They also provide evidence that this phosphatase can utilize the kinase as an endogenous substrate, which suggests the occurrence of a regulatory mechanism connected with reversible protein phosphorylation on tyrosine. Since Yco6 and Yor5 are both involved in the synthesis of capsular polysaccharide and since capsules are essential to the virulence of K. pneumoniae, we suggest that reversible protein phosphorylation on tyrosine may be part of the cascade of reactions that determine the pathogenicity of bacteria.


Assuntos
Klebsiella pneumoniae/enzimologia , Proteínas Tirosina Fosfatases/química , Proteínas Tirosina Fosfatases/isolamento & purificação , Proteínas Tirosina Quinases/química , Proteínas Tirosina Quinases/isolamento & purificação , Sequência de Aminoácidos , Dados de Sequência Molecular , Fosforilação , Fosfotirosina/análise , Fosfotirosina/metabolismo , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Fatores de Tempo
3.
Biochemistry ; 40(10): 3047-55, 2001 Mar 13.
Artigo em Inglês | MEDLINE | ID: mdl-11258918

RESUMO

The isocitrate dehydrogenase kinase/phosphatase (IDHK/P) of E. coli is a bifunctional enzyme responsible for the reversible phosphorylation of isocitrate dehydrogenase (IDH) on a seryl residue. As such, it belongs to the serine/threonine protein kinase family. However, only a very limited homology with the well-characterized eukaryotic members of that family was identified so far in its primary structure. In this report, a new region of amino acids including three putative residues involved in the kinase activity of IDHK/P was identified by sequence comparison with eukaryotic protein kinases. In IDHK/P, these residues are Asp-371, Asn-377, and Asp-403. Their counterpart eukaryotic residues have been shown to be involved in either catalysis (former residue) or magnesium binding (the two latter residues). Site-directed mutagenesis was performed on these three IDHK/P residues, and also on the Glu-439 residue equivalent to that of the Ala-Pro-Glu motif found in the eukaryotic protein kinases. Mutations of Asp-371 into either Ala, Glu, or Gln residues drastically lowered the yield and the quality of the purification. Nevertheless, the recovered mutant enzymes were barely able to phosphorylate IDH either in vitro or after expression in an aceK (-) mutant strain. In contrast, mutation of either Asn-377, Asp-403, or Glu-439 into an Ala residue altered neither the yield of purification nor the maximal phosphorylating capacity of the enzyme. However, when IDH was phosphorylated in the presence of increasing concentrations of magnesium ions, the two former mutants displayed a much lower affinity for this cation, with a K(m) value of 0.6 or 0.8 mM, respectively, as compared to 0.1 mM for the wild-type enzyme. On the other hand, the Glu439Ala mutant has an affinity for magnesium essentially unaffected. Therefore, and in contrast to the current opinion, our results suggest that the catalytic mechanism of IDHK/P exhibits some similarities with that found in the eukaryotic members of the protein kinase family.


Assuntos
Domínio Catalítico , Escherichia coli/enzimologia , Células Eucarióticas/enzimologia , Complexos Multienzimáticos/metabolismo , Fosfoproteínas Fosfatases/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Sequência de Aminoácidos , Asparagina/genética , Asparagina/metabolismo , Ácido Aspártico/genética , Ácido Aspártico/metabolismo , Sítios de Ligação/genética , Domínio Catalítico/genética , Escherichia coli/genética , Magnésio/metabolismo , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Fosfoproteínas Fosfatases/genética , Fosforilação , Proteínas Quinases/metabolismo , Proteínas Serina-Treonina Quinases/genética , Alinhamento de Sequência
4.
J Mol Biol ; 304(3): 311-21, 2000 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-11090276

RESUMO

The phosphorylation of proteins at tyrosine residues is known to play a key role in the control of numerous fundamental processes in animal systems. In contrast, the biological significance of protein-tyrosine phosphorylation in bacteria, which has only been recognised recently, is still unclear. Here, we have analysed the role in Escherichia coli cells of an autophosphorylating protein-tyrosine kinase, Wzc, and a phosphotyrosine-protein phosphatase, Wzb, by performing knock-out experiments on the corresponding genes, wzc and wzb, and looking at the metabolic consequences induced. The results demonstrate that the phosphorylation of Wzc, as regulated by Wzb, is directly connected with the production of a particular capsular polysaccharide, colanic acid. Thus, when Wzc is phosphorylated on tyrosine, no colanic acid is synthesised by bacteria, but when dephosphorylated by Wzb, colanic acid is produced. This process is rather specific to the pair of proteins Wzc/Wzb. Indeed, a much lesser effect, if any, on colanic acid synthesis is observed when knock-out experiments are performed on another pair of genes, etk and etp, which also encode respectively a protein-tyrosine kinase, Etk, and a phosphotyrosine-protein phosphatase, Etp, in E. coli. In addition, the analysis of the phosphorylation reaction at the molecular level reveals differences between Gram-negative and Gram-positive bacteria, namely in the number of protein components required for this reaction to occur.


Assuntos
Proteínas de Bactérias , Bactérias Gram-Negativas/metabolismo , Proteínas de Membrana , Fosfotirosina/metabolismo , Polissacarídeos/biossíntese , Proteínas Tirosina Fosfatases/metabolismo , Proteínas Tirosina Quinases/metabolismo , Sequência de Aminoácidos , Proteínas de Escherichia coli , Deleção de Genes , Bactérias Gram-Negativas/enzimologia , Bactérias Gram-Negativas/genética , Bactérias Gram-Negativas/crescimento & desenvolvimento , Bactérias Gram-Positivas/enzimologia , Bactérias Gram-Positivas/genética , Bactérias Gram-Positivas/metabolismo , Dados de Sequência Molecular , Fosforilação , Proteínas Tirosina Fosfatases/genética , Proteínas Tirosina Quinases/química , Proteínas Tirosina Quinases/genética , Alinhamento de Sequência , Especificidade por Substrato
5.
Biochim Biophys Acta ; 1447(2-3): 278-83, 1999 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-10542327

RESUMO

With the aim of identifying genes involved in cartilage differentiation, we have used a subtractive hybridization strategy with cDNAs from a chondrocytic cell line (MC615) and mRNAs from a mesenchymal precursor cell line (10T1/2). We have isolated a cDNA clone representing a novel mouse gene. The predicted 368-amino acid protein, designated ZF-12, contains four C(2)H(2)-type zinc finger motifs and one region homologous to the LeR domain, a finger-associated structural domain. ZF-12 mRNAs are expressed during embryonic development and in different organs in adult, including rib cartilage. These data suggest that ZF-12 might play an important role not only in cartilage differentiation, but also in basic cellular processes.


Assuntos
Dedos de Zinco/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Clonagem Molecular , Expressão Gênica , Camundongos , Dados de Sequência Molecular
6.
Biochimie ; 81(3): 197-200, 1999 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-10385000

RESUMO

The regulation of transcription of the pckA gene coding for phosphoenolpyruvate carboxykinase in Escherichia coli was analysed by site-directed mutagenesis of the promoter region and measurement of in vitro transcription initiation. Mutation of the guanine residue at position -14 to either cytosine or thymine was found to result in a drastic decrease of transcription, even in the presence of the natural -35 hexamer TTTCCA that differs by only two nucleotides from the consensus sequence TTGACA. It was concluded that the promoter region of pckA contains an extended -10 module, 5'-TG-3', located one base upstream of the -10 hexamer, which is crucial for transcription.


Assuntos
Escherichia coli/enzimologia , Fosfoenolpiruvato Carboxiquinase (ATP)/genética , Sequência de Bases , DNA Bacteriano , Escherichia coli/genética , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Plasmídeos , Regiões Promotoras Genéticas , Transcrição Gênica
7.
J Bacteriol ; 181(11): 3472-7, 1999 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10348860

RESUMO

Two proteins of Escherichia coli, termed Wzc and Wzb, were analyzed for their capacity to participate in the reversible phosphorylation of proteins on tyrosine. First, Wzc was overproduced from its specific gene and purified to homogeneity by affinity chromatography. Upon incubation in the presence of radioactive ATP, it was found to effectively autophosphorylate. Two-dimensional analysis of its phosphoamino acid content revealed that it was modified exclusively at tyrosine. Second, Wzb was also overproduced from the corresponding gene and purified to homogeneity by affinity chromatography. It was shown to contain a phosphatase activity capable of cleaving the synthetic substrate p-nitrophenyl phosphate into p-nitrophenol and free phosphate. In addition, it was assayed on individual phosphorylated amino acids and appeared to dephosphorylate specifically phosphotyrosine, with no effect on phosphoserine or phosphothreonine. Such specificity for phosphotyrosine was confirmed by the observation that Wzb was able to dephosphorylate previously autophosphorylated Wzc. Together, these data demonstrate, for the first time, that E. coli cells contain both a protein-tyrosine kinase and a phosphotyrosine-protein phosphatase. They also provide evidence that this phosphatase can utilize the kinase as an endogenous substrate, which suggests the occurrence of a regulatory mechanism connected with reversible protein phosphorylation on tyrosine. From comparative analysis of amino acid sequences, Wzc was found to be similar to a number of proteins present in other bacterial species which are all involved in the synthesis or export of exopolysaccharides. Since these polymers are considered important virulence factors, we suggest that reversible protein phosphorylation on tyrosine may be part of the cascade of reactions that determine the pathogenicity of bacteria.


Assuntos
Escherichia coli/enzimologia , Proteínas Tirosina Fosfatases/metabolismo , Proteínas Tirosina Quinases/metabolismo , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Dados de Sequência Molecular , Nitrofenóis/metabolismo , Compostos Organofosforados/metabolismo , Fosforilação , Fosfotirosina/metabolismo , Proteínas Tirosina Fosfatases/química , Proteínas Tirosina Fosfatases/genética , Proteínas Tirosina Fosfatases/isolamento & purificação , Proteínas Tirosina Quinases/química , Proteínas Tirosina Quinases/genética , Proteínas Tirosina Quinases/isolamento & purificação , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade por Substrato
8.
Eur J Biochem ; 262(1): 224-9, 1999 May.
Artigo em Inglês | MEDLINE | ID: mdl-10231385

RESUMO

Isocitrate dehydrogenase kinase/phosphatase (IDHK/P) is a homodimeric enzyme which controls the oxidative metabolism of Escherichia coli, and exibits a high intrinsic ATPase activity. When subjected to electrophoresis under nonreducing conditions, the purified enzyme migrates partially as a dimer. The proportion of the dimer over the monomer is greatly increased by treatment with cupric 1,10 phenanthrolinate or 5,5'-dithio-bis(2-nitrobenzoic acid), and fully reversed by dithiothreitol, indicating that covalent dimerization is produced by a disulfide bond. To identify the residue(s) involved in this intermolecular disulfide-bond, each of the eight cysteines of the enzyme was individually mutated into a serine. It was found that, under nonreducing conditions, the electrophoretic patterns of all corresponding mutants are identical to that of the wild-type, except for the Cys67-->Ser which migrates exclusively as a monomer and for the Cys108-->Ser which migrates preferentially as a dimer. Furthermore, in contrast to the wild-type enzyme and all the other mutants, the Cys67-->Ser mutant still migrates as a monomer after treatment with cupric 1,10 phenanthrolinate. This result indicates that the intermolecular disulfide bond involves only Cys67 in each IDHK/P wild-type monomer. This was further supported by mass spectrum analysis of the tryptic peptides derived from either the cupric 1,10 phenanthrolinate-treated wild-type enzyme or the native Cys108-->Ser mutant, which show that they both contain a Cys67-Cys67 disulfide bond. Moreover, both the cupric 1,10 phenanthrolinate-treated wild-type enzyme and the native Cys108-->Ser mutant contain another disulfide bond between Cys356 and Cys480. Previous results have shown that this additional Cys356-Cys480 disulfide bond is intramolecular [Oudot, C., Jault, J.-M., Jaquinod, M., Negre, D., Prost, J.-F., Cozzone, A.J. & Cortay, J.-C. (1998) Eur. J. Biochem. 258, 579-585].


Assuntos
Cisteína/metabolismo , Escherichia coli/enzimologia , Fosfoproteínas Fosfatases/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Sequência de Bases , Primers do DNA , Dimerização , Dissulfetos/química , Oxirredução , Fosfoproteínas Fosfatases/química , Proteínas Serina-Treonina Quinases/química
9.
FEBS Lett ; 445(1): 137-43, 1999 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-10069388

RESUMO

The autophosphorylating protein, Ptk, of the bacterium Acinetobacter johnsonii was overproduced, purified to homogeneity and assayed for ATP binding by using the nucleotide analog 5'-p-fluorosulfonylbenzoyl adenosine. The ATP binding site of this bacterial autophosphorylating protein was found to be different from that generally used by eukaryotic protein kinases. It consists of two amino acid sequences that closely resemble the Walker motifs A and B. This observation was confirmed by site-directed mutagenesis experiments which showed, in addition, that the ATP molecule bound to these motifs is effectively employed by the bacterial protein to autophosphorylate on tyrosine. It is concluded that even though the overall autophosphorylation reaction is similar in eukaryotic and prokaryotic proteins, the mechanism involved is likely different.


Assuntos
Acinetobacter/enzimologia , Trifosfato de Adenosina/metabolismo , Proteínas Tirosina Quinases/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Sítios de Ligação , Glutationa Transferase/biossíntese , Glutationa Transferase/genética , Dados de Sequência Molecular , Fosfatos , Fosforilação , Proteínas Tirosina Quinases/genética , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo
10.
J Bacteriol ; 181(3): 893-8, 1999 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-9922253

RESUMO

The icd gene of Escherichia coli, encoding isocitrate dehydrogenase, was shown to be expressed from two different promoters: the previously identified icd P1 and a newly detected second promoter, icd P2, whose expression is positively regulated by the catabolite repressor-activator protein Cra, formerly called FruR. In each case, we determined the mRNA start site by primer extension analysis of in vivo transcripts and examined the interaction of the icd control region with either RNA polymerase or Cra. We observed that (i) the Cra factor binds to and activates transcription from a site centered at position -76.5 within the icd P2 promoter region and (ii) three particular mutations in the C-terminal end of the alpha subunit of RNA polymerase (L262A, R265A, and N268A) considerably diminish transcription initiating from the icd P2 promoter, as shown by in vitro experiments performed in the presence of mutant RNA polymerases carrying Ala substitutions.


Assuntos
Proteínas de Bactérias/metabolismo , RNA Polimerases Dirigidas por DNA/metabolismo , Proteínas de Escherichia coli , Escherichia coli/enzimologia , Escherichia coli/genética , Regulação Bacteriana da Expressão Gênica , Isocitrato Desidrogenase/genética , Regiões Promotoras Genéticas , Proteínas Repressoras/metabolismo , Transcrição Gênica , Ativação Transcricional , Substituição de Aminoácidos , Sequência de Bases , Desoxirribonuclease I , Isocitrato Desidrogenase/biossíntese , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , RNA Mensageiro/genética , Proteínas Recombinantes/metabolismo , Sequências Reguladoras de Ácido Nucleico , Mapeamento por Restrição
11.
IUBMB Life ; 48(3): 339-43, 1999 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-10690649

RESUMO

The biochemical properties of the autophosphorylating protein tyrosine kinase of Acinetobacter johnsonii were analyzed in vitro. The study shows that the optimal pH value for the phosphorylation reaction is approximately 7. The enzyme activity is stimulated by magnesium and, to a lesser extent, by manganese ions, whereas calcium ions have no effect. The phosphorylation process is rapid reaching a maximum in < 2 min, and the enzyme is modified at multiple sites. Interestingly, the bacterial enzyme is insensitive to a series of molecules known to affect the activity of eukaryotic protein tyrosine kinases: genistein, quercetin, tosyllysine chloromethyl ketone, and vanadate. We concluded that, even though the overall phosphorylation reaction catalyzed by the A. johnsonii enzyme is identical to that occurring in eukaryotes, this bacterial kinase exhibits a number of specific properties and therefore probably belongs to a separate group in the general family of protein tyrosine kinases.


Assuntos
Acinetobacter/enzimologia , Proteínas de Bactérias/metabolismo , Proteínas Tirosina Quinases/metabolismo , Proteínas de Bactérias/química , Proteínas Tirosina Quinases/química
12.
J Mol Biol ; 278(2): 339-47, 1998 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-9571056

RESUMO

The ptp gene of Acinetobacter johnsonii was previously reported to encode a low-molecular-mass protein, Ptp, whose amino acid sequence, predicted from the theoretical analysis of the nucleotide sequence of the gene, exhibits a high degree of similarity with those of different eukaryotic and prokaryotic phosphotyrosine-protein phophatases. We have now overexpressed the ptp gene in Escherichia coli cells, purified the Ptp protein to homogeneity by a single-step chromatographic procedure, and analysed its functional properties. We have shown that Ptp can catalyse the dephosphorylation of p-nitrophenyl phosphate and phosphotyrosine, but has no effect on phosphoserine or phosphothreonine. Its activity is blocked by ammonium molybdate and sodium orthovanadate, which are strong inhibitors of phosphotyrosine-protein phosphatases, as well as by N-ethylmaleimide and iodoacetic acid. Such specificity of Ptp for phosphotyrosine has been confirmed by the observation that it can dephosphorylate endogenous proteins phosphorylated on tyrosine, but not proteins modified on either serine or threonine. In addition, Ptp has been shown to quantitatively dephosphorylate two exogenous peptides, derived respectively from leech hirudin and human gastrin, previously phosphorylated on tyrosine. Moreover, site-directed mutagenesis experiments performed on Cys11 and Arg16, which are both present in the sequence motif (H/V)C(X5)R(S/T) typical of eukaryotic phosphotyrosine-protein phosphatases, have demonstrated that each amino acid residue is essential for the catalytic activity of Ptp. Taken together, these data provide evidence that Ptp is a member of the phosphotyrosine-protein phosphatase family. Furthermore, in search for the biological function of Ptp, we have found that it can specifically dephosphorylate an endogenous protein kinase, termed Ptk, which is known to autophosphorylate at multiple tyrosine residues in the inner membrane of Acinetobacter johnsonii cells. This represents the first identification of a protein substrate for a bacterial phosphotyrosine-protein phosphatase, and therefore constitutes a possible model for analysing the role of reversible phosphorylation on tyrosine in the regulation of microbial physiology.


Assuntos
Acinetobacter/enzimologia , Proteínas Tirosina Fosfatases/metabolismo , Sequência de Aminoácidos , Dados de Sequência Molecular , Peso Molecular , Proteínas Tirosina Fosfatases/genética , Proteínas Tirosina Fosfatases/isolamento & purificação , Homologia de Sequência de Aminoácidos , Especificidade por Substrato
13.
Biochimie ; 80(1): 43-8, 1998 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-9587661

RESUMO

Microorganisms have developed three different systems for catalyzing protein phosphorylation and using this reversible modificaiton to regulate their cellular activities. The first 'classical' system utilizes nucleoside-triphosphates as phosphoryl donors and leads to the modification of protein substrates at serine/threonine or tyrosine residues. The second system, called 'two-component system', requires first a sensor kinase which autophosphorylates at a histidine residue at the expense of adenosine-triphosphate, then a response regulator which is modified in turn at an aspartate residue and thereafter induces a metabolic change within the cell. The third system, called 'PTS system', makes use of phosphoenol pyruvate to generate a phosphoryl group which is passed down a chain of several proteins and finally transferred to a sugar. There is increasing evidence that, contrary to an early concept, these systems and the corresponding enzymes (protein kinases and phosphoprotein phosphatases) share a number of structural and functional similarities with the phosphorylation-dephosphorylation machineries found in eukaryotes. Therefore one can expect that microorganisms will serve, once again, as a basic model for exploring and understanding a key regulatory mechanism, reversible protein phosphorylation, which concerns all organisms.


Assuntos
Processamento de Proteína Pós-Traducional , Proteínas/metabolismo , Animais , Fosforilação , Células Procarióticas , Proteínas Quinases/metabolismo
14.
J Mol Biol ; 276(2): 355-65, 1998 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-9512708

RESUMO

The start site of transcription of the ppsA gene, whose expression is controlled by the regulatory protein FruR in Escherichia coli, was determined by primer extension of in vivo transcripts. The interactions of the ppsA promoter with either RNA polymerase or FruR factor were analysed by the base removal method. Our results indicate that: (i) the RNA polymerase binding site has a -10 extended module but lacks its -35 hexamer; (ii) FruR binds to a target DNA region centered around position -45.5 upstream of the ppsA gene. In addition, circular permutation analysis showed that, upon binding to its site, FruR induces a sharp bend of 120 degrees in the DNA helix, which suggests a crucial involvement of FruR-induced bending in ppsA promoter activation. Direct contacts between the upstream activating DNA and RNA polymerase were studied in an in vitro transcription assay by using reconstituted RNA polymerase mutants containing Ala substitutions in C-terminal domain of their alpha subunit. The alpha[L262A], alpha[R265A] and alpha[N268A] substitutions, which caused the most drastic reduction in the FruR-mediated activation of the ppsA promoter, had previously been shown to inhibit the upstream element-mediated activation at the rrnBP1 promoter.


Assuntos
Proteínas de Bactérias/metabolismo , Proteínas de Escherichia coli , Escherichia coli/genética , Fosfotransferases (Aceptores Pareados)/genética , Fosfotransferases (Aceptores Pareados)/metabolismo , Proteínas Repressoras/metabolismo , Ativação Transcricional , Alanina , Proteínas de Bactérias/genética , Sequência de Bases , Sítios de Ligação , DNA/química , DNA/metabolismo , RNA Polimerases Dirigidas por DNA/genética , RNA Polimerases Dirigidas por DNA/metabolismo , Escherichia coli/metabolismo , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Regiões Promotoras Genéticas , RNA Mensageiro , Sequências Reguladoras de Ácido Nucleico , Proteínas Repressoras/genética
15.
Eur J Biochem ; 258(2): 579-85, 1998 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-9874226

RESUMO

The ATPase activity of Escherichia coli isocitrate dehydrogenase kinase/phosphatase was rapidly lost after prior incubation with the ATP analogue 5'-[p-(fluorosulfonyl)benzoyl]adenosine (FSBA). This inactivation was prevented by the presence of either 5 mM ATP or 5 mM ADP plus Mg2+, while it could be fully reversed by subsequent addition of dithiothreitol, thereby indicating the involvement of cysteine residue(s) in this process. About 2 mol [3H]FSBA/mol IDHK/P were bound during the time course of the inactivation. However, this binding was not significantly modified by either prior incubation with ATP or subsequent addition of dithiothreitol. This suggested that FSBA-mediated inactivation of isocitrate dehydrogenase kinase/phosphatase occurred via the formation of a disulfide bond. Accordingly, mass spectral analysis revealed that on addition of FSBA, a disulfide bond was formed between residues Cys356 and Cys523. The mutation Cys356Ser renders the enzyme insensitive to FSBA treatment indicating that Cys356 is the primary target for this analogue. However, the Cys523Ser mutant was still inactivated by FSBA and mass spectral analysis showed that this was due to the formation of a new disulfide bond between Cys356 and Cys480.


Assuntos
Adenosina/análogos & derivados , Escherichia coli/enzimologia , Fosfoproteínas Fosfatases/antagonistas & inibidores , Proteínas Serina-Treonina Quinases/antagonistas & inibidores , Adenosina/metabolismo , Adenosina/farmacologia , Adenosina Trifosfatases/metabolismo , Trifosfato de Adenosina/análogos & derivados , Marcadores de Afinidade/farmacologia , Dissulfetos/química , Inibidores Enzimáticos/farmacologia , Cinética , Mutagênese Sítio-Dirigida/genética , Fragmentos de Peptídeos/química , Fosfoproteínas Fosfatases/genética , Proteínas Quinases/química , Proteínas Serina-Treonina Quinases/genética , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Tripsina/metabolismo
16.
Annu Rev Microbiol ; 52: 127-64, 1998.
Artigo em Inglês | MEDLINE | ID: mdl-9891796

RESUMO

Growth of enteric bacteria on acetate as the sole source of carbon and energy requires operation of a particular anaplerotic pathway known as the glyoxylate bypass. In this pathway, two specific enzymes, isocitrate lyase and malate synthase, are activated to divert isocitrate from the tricarboxylic acid cycle and prevent the quantitative loss of acetate carbons as carbon dioxide. Bacteria are thus supplied with the metabolic intermediates they need for synthesizing their cellular components. The channeling of isocitrate through the glyoxylate bypass is regulated via the phosphorylation/dephosphorylation of isocitrate dehydrogenase, the enzyme of the tricarboxylic acid cycle which competes for a common substrate with isocitrate lyase. When bacteria are grown on acetate, isocitrate dehydrogenase is phosphorylated and, concomitantly, its activity declines drastically. Conversely, when cells are cultured on a preferred carbon source, such as glucose, the enzyme is dephosphorylated and recovers full activity. Such reversible phosphorylation is mediated by an unusual bifunctional enzyme, isocitrate dehydrogenase kinase/phosphatase, which contains both modifying and demodifying activities on the same polypeptide. The genes coding for malate synthase, isocitrate lyase, and isocitrate dehydrogenase kinase/phosphatase are located in the same operon. Their expression is controlled by a complex dual mechanism that involves several transcriptional repressors and activators. Recent developments have brought new insights into the nature and mode of action of these different regulators. Also, significant advances have been made lately in our understanding of the control of enzyme activity by reversible phosphorylation. In general, analyzing the physiological behavior of bacteria on acetate provides a valuable approach for deciphering at the molecular level the mechanisms of cell adaptation to the environment.


Assuntos
Acetatos/metabolismo , Enterobacteriaceae/fisiologia , Proteínas de Bactérias/metabolismo , Ciclo do Ácido Cítrico , Enterobacteriaceae/genética , Enterobacteriaceae/metabolismo , Ativação Enzimática , Genes Bacterianos , Glioxilatos/metabolismo , Isocitrato Desidrogenase/genética , Isocitrato Desidrogenase/metabolismo , Isocitrato Liase/genética , Isocitrato Liase/metabolismo , Malato Sintase/genética , Óperon/genética , Fosforilação , Proteínas Repressoras/genética
17.
J Mol Biol ; 270(3): 496-510, 1997 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-9237914

RESUMO

FruR is an Escherichia coli transcriptional regulator that belongs to the LacI DNA-binding protein family. By using 1H and 15N NMR spectroscopy, we have determined the three-dimensional solution structure of the FruR N-terminal DNA-binding domain consisting of 57 amino acid residues. A total of 809 NMR-derived distances and 54 dihedral angle constraints have been used for molecular modelling with the X-PLOR program. The resulting set of calculated structures presents an average root-mean-square deviation of 0.37 A at the main-chain level for the first 47 residues. This highly defined N-terminal part of the structure reveals a similar topology for the three alpha-helices when compared to the 3D structures of LacI and PurR counterparts. The most striking difference lies in the connection between helix II and helix III, in which three additional residues are present in FruR. This connecting segment is well structured and contains a type III turn. Apart from hydrophobic interactions of non-polar residues with the core of the domain, this connecting segment is stabilised by several hydrogen bonds and by the aromatic ring stacking between Tyr19 of helix II and Tyr28 of the turn. The region containing the putative "hinge helix" (helix IV), that has been described in PurR-DNA complex to make specific base contacts in the minor groove of DNA, is unfolded. Examination of hydrogen bonds highlights the importance of homologous residues that seem to be conserved for their ability to fulfill helix N and C-capping roles in the LacI repressor family.


Assuntos
Proteínas de Bactérias/química , Proteínas de Ligação a DNA/química , Proteínas de Escherichia coli , Escherichia coli/química , Espectroscopia de Ressonância Magnética/métodos , Estrutura Secundária de Proteína , Proteínas Repressoras/química , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Repressores Lac , Modelos Moleculares , Dados de Sequência Molecular , Proteínas Recombinantes de Fusão , Proteínas Repressoras/genética , Proteínas Repressoras/isolamento & purificação , Alinhamento de Sequência
18.
Nucleic Acids Res ; 25(4): 713-8, 1997 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-9016619

RESUMO

The specific interaction of the upstream element-containing promoter of the Escherichia coli acetate operon with either the RNA polymerase holoenzyme or its alpha subunit has been analyzed by the base removal method. Our results indicate that: (i) direct and specific base contacts can be detected in the acetate promoter-alpha subunit complex; (ii) base elimination in the upstream element of the acetate promoter enhances the binding of RNA polymerase. A similar effect is observed when studying the interactions between RNA polymerase and the rrnB ribosomal operon P1 promoter.


Assuntos
Acetatos/metabolismo , DNA Bacteriano/metabolismo , Escherichia coli/genética , Regiões Promotoras Genéticas , Transcrição Gênica , Ativação Transcricional , Sequência de Bases , Sítios de Ligação/genética , RNA Polimerases Dirigidas por DNA/metabolismo , Genes Bacterianos , Dados de Sequência Molecular , Óperon de RNAr
19.
Folia Microbiol (Praha) ; 42(3): 165-70, 1997.
Artigo em Inglês | MEDLINE | ID: mdl-9246757

RESUMO

Bacteria harbor three different protein-phosphorylating systems which regulate distinct physiological processes: first, the nucleotide-dependent system which modifies hydroxyl groups of amino acids in protein substrates; second, the two-component system which involves both sensor kinase and response regulator; third, the phosphoenolpyruvate-dependent phosphotransferase system. These systems share a number of structural and functional similarities with the protein-phosphorylating systems of eukaryotes.


Assuntos
Bactérias/metabolismo , Proteínas de Bactérias/metabolismo , Proteínas Quinases/metabolismo , Adaptação Biológica , Células Eucarióticas/metabolismo , Sistema Fosfotransferase de Açúcar do Fosfoenolpiruvato/metabolismo , Fosforilação , Células Procarióticas/metabolismo , Proteínas Tirosina Quinases/metabolismo , Transdução de Sinais
20.
Gene ; 204(1-2): 259-65, 1997 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-9434192

RESUMO

Acinetobacter johnsonii harbors a protein tyrosine kinase activity that is able to catalyze autophosphorylation, like a number of eukaryotic tyrosine kinases. A biochemical and genetic analysis of this enzyme was performed. Maximum phosphorylation in vitro was obtained by incubating the kinase for 2 min at pH 7.0 in the presence of 5 mM magnesium chloride. In contrast to eukaryotic enzymes, no inhibitory effect of genistein and no phosphorylation of synthetic substrates such as poly (Glu80 Tyr20) or angiotensin II were observed. The analysis of the bacterial kinase by two-dimensional gel electrophoresis revealed the presence of at least five isoforms, all phosphorylated exclusively at tyrosine, which supports the concept that autophosphorylation occurs at multiple sites within the protein. The cloning and nucleotide sequencing of the gene encoding this kinase were achieved, which represents the first molecular characterization of a gene of this type in bacteria. An open reading frame of 2199 nucleotides encoding a protein of 82,373 Da was detected. The analysis of the deduced amino acid sequence suggested a possible involvement of the enzyme in cell recognition and bacterial pathogenicity. In addition, the cloning and sequencing of the region immediately upstream of the gene encoding the kinase revealed a novel open reading frame of 426 nucleotides encoding a phosphotyrosine protein phosphatase of 16,217 Da, which indicates that autophosphorylation on tyrosine is a physiologically reversible reaction.


Assuntos
Acinetobacter/enzimologia , Genes Bacterianos , Proteínas Tirosina Fosfatases/genética , Proteínas Tirosina Quinases/genética , Acinetobacter/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Clonagem Molecular , DNA Bacteriano , Humanos , Dados de Sequência Molecular , Fosforilação , Proteínas Tirosina Fosfatases/metabolismo , Proteínas Tirosina Quinases/metabolismo
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