Influence of the N atom position on the excited state photodynamics of protonated azaindole.

We present a study of the photofragmentation of three protonated azaindole molecules - 7-azaindole, 6-azaindole, and 5-azaindole - consisting of fused pyrrole-pyridine bicyclic aromatic systems, in which the pyridinic (protonated) nitrogen heteroatom is located at the 7, 6, and 5 positions, respectively. Photofragmentation electronic spectra of the isolated aforementioned azaindolinium cations reveal that their photodynamics extends over timescales covering nine orders of magnitude and provide evidence about the resultant fragmentation pathways. Moreover, we show how the position of the heteroatom in the aromatic skeleton influences the excited state energetics, fragmentation pathways, and fragmentation timescales. Computed ab initio adiabatic transition energies are used to assist the assignation of the spectra, while geometry optimisation in the excited electronic states as well as ab initio calculations along the potential surfaces demonstrate the role of ππ*/πσ* coupling and/or large geometry changes in the dynamics of these species. Evidence supporting the formation of Dewar valence isomers as intermediates involved in sub-picosecond relaxation processes is discussed.

Influence of the N atom and its position on electron photodetachment of deprotonated indole and azaindole.

Electron photodetachment of cold deprotonated indole and azaindole anions has been studied by use of a mass-selective photofragmentation spectrometer capable of negative ion and neutral particle detection. The electron affinities of the indolyl radical and the 5-, 6- and 7-azaindolyl radicals have been measured with an uncertainty of less than 0.002 eV. The presence of the nitrogen atom in the six-membered ring of the azaindolide anions stabilises the electron by 0.3 to 0.4 eV, i.e. about 10-15%, compared to the indolide anion. No fragmentation was observed in either the anionic or radical forms of the species studied. The appearance of dipole-bound states in the spectra of deprotonated 6- and 7-azaindole anions allowed us to analyse the vibrational structure of the neutral 6- and 7-azaindolyl radicals produced following photodetachment. Although no dipole-bound states were clearly identified for deprotonated indole or 5-azaindole, the shape of the photodetachment threshold suggests the presence of a very weakly dipole-bound state or dipole resonance, which cannot be resolved with our laser resolution.

Excited state hydrogen transfer dynamics in phenol-(NH3)2 studied by picosecond UV-near IR-UV time-resolved spectroscopy.

Time-evolutions of excited state hydrogen transfer (ESHT) in phenol (PhOH)-(NH3)2 clusters have been measured by three-color picosecond (ps) ultraviolet (UV)-near infrared (NIR)-UV pump-probe ion dip spectroscopy. The formation of a reaction product, ˙NH4NH3, is detected by its NIR absorption due to a 3p-3s Rydberg transition. The ESHT reactions from all of the vibronic levels show biexponential time-evolutions, even from the S1 origin. Based on the biexponential time-evolution, it is suggested that there is a second reaction path via the triplet πσ* state, which gives the slow component. The fast time-evolution of the ESHT reaction from the S1 origin is measured to be 268 ps, which is 10-times slower than that in PhOH-(NH3)3, and a higher barrier between the ππ* and reactive πσ* states is suggested. The size dependence of the ESHT reaction rates is discussed based on a potential distortion due to the proton transferred state in the ππ* potential surface.

Photodetachment of deprotonated aromatic amino acids: stability of the dehydrogenated radical depends on the deprotonation site.

While aromatic amino acids in their deprotonated form have been well characterized by IR and photoelectron spectroscopies, no information is available on the neutral dehydrogenated radicals and, in particular, on their stability when the deprotonation site is changed. This is investigated by observing the neutral fragment issued from either simple photodetachment or dissociative photodetachment of the deprotonated aromatic amino acids phenylalanine, tyrosine, and tryptophan. We show that the dehydrogenated radicals of aromatic amino acids produced upon photodetachment of molecules deprotonated on the carbonyl group dissociate without barrier, leading to the formation of CO2 and a radical amine. However, when the system is deprotonated on functional groups located on the chromophore, the radicals produced by photodetachment are stable, indicating the important photostabilizing role played by functional groups.

Electron-Proton Transfer Mechanism of Excited-State Hydrogen Transfer in Phenol-(NH3 )n (n=3 and 5).

Excited-state hydrogen transfer (ESHT) is responsible for various photochemical processes of aromatics, including photoprotection of nuclear basis. Its mechanism is explained by internal conversion from the aromatic ππ* to πσ* states via conical intersection. This means that the electron is transferred to a diffuse Rydberg-like σ* orbital apart from proton migration. This picture means the electron and the proton do not move together and the dynamics are different in principle. Here, we have applied picosecond time-resolved near-infrared (NIR) and infrared (IR) spectroscopy to the phenol-(NH3 )5 cluster, the benchmark system of ESHT, and monitored the electron transfer and proton motion independently. The electron transfer monitored by the NIR transition rises within 3 ps, while the overall H transfer detected by the IR absorption of NH vibration appears with a lifetime of about 20 ps. This clearly proves that the electron motion and proton migration are decoupled. Such a difference of the time-evolutions between the NIR absorption and the IR transition has not been detected in a cluster with three ammonia molecules. We will report our full observation together with theoretical calculations of the potential energy surfaces of the ππ* and πσ* states, and will discuss the ESHT mechanism and its cluster size-dependence between n=3 and 5. It is suggested that the presence and absence of a barrier in the proton transfer coordinate cause the different dynamics.

Non-radiative processes in protonated diazines, pyrimidine bases and an aromatic azine.

The excited state lifetimes of DNA bases are often very short due to very efficient non-radiative processes assigned to the ππ*-nπ* coupling. A set of protonated aromatic diazine molecules (pyridazine, pyrimidine and pyrazine C4H5N2(+)) and protonated pyrimidine DNA bases (cytosine, uracil and thymine), as well as the protonated pyridine (C5H6N(+)), have been investigated. For all these molecules except one tautomer of protonated uracil (enol-keto), electronic spectroscopy exhibits vibrational line broadening. Excited state geometry optimization at the CC2 level has been conducted to find out whether the excited state lifetimes measured from line broadening can be correlated to the calculated ordering of the ππ* and nπ* states and the ππ*-nπ* energy gap. The short lifetimes, observed when one nitrogen atom of the ring is not protonated, can be rationalized by relaxation of the ππ* state to the nπ* state or directly to the electronic ground state through ring puckering.

Electron-Proton Decoupling in Excited-State Hydrogen Atom Transfer in the Gas Phase.

Hydrogen-release by photoexcitation, excited-state-hydrogen-transfer (ESHT), is one of the important photochemical processes that occur in aromatic acids and is responsible for photoprotection of biomolecules. The mechanism is described by conversion of the initial state to a charge-separated state along the O(N)-H bond elongation, leading to dissociation. Thus ESHT is not a simple H-atom transfer in which a proton and a 1s electron move together. Here we show that the electron-transfer and the proton-motion are decoupled in gas-phase ESHT. We monitor electron and proton transfer independently by picosecond time-resolved near-infrared and infrared spectroscopy for isolated phenol-(ammonia)5 , a benchmark molecular cluster. Electron transfer from phenol to ammonia occurred in less than 3 picoseconds, while the overall H-atom transfer took 15 picoseconds. The observed electron-proton decoupling will allow for a deeper understanding and control of of photochemistry in biomolecules.

UV photodissociation spectroscopy of cryogenically cooled gas phase host-guest complex ions of crown ethers.

The geometric and electronic structures of cold host-guest complex ions of crown ethers (CEs) in the gas phase have been investigated by ultraviolet (UV) fragmentation spectroscopy. As host CEs, we chose 15-crown-5 (15C5), 18-crown-6 (18C6), 24-crown-8 (24C8), and dibenzo-24-crown-8 (DB24C8), and as guests protonated-aniline (aniline·H(+)) and protonated-dibenzylamine (dBAM·H(+)) were chosen. The ions generated by an electrospray ionization (ESI) source were cooled in a quadrupole ion-trap (QIT) using a cryogenic cooler, and UV spectra were obtained by UV photodissociation (UVPD) spectroscopy. UV spectroscopy was complemented by quantum chemical calculations of the most probable complex structures. The UV spectrum of aniline·H(+)·CEs is very sensitive to the symmetry of CEs; aniline·H(+)·18C6 shows a sharp electronic spectrum similar to aniline·H(+), while aniline·H(+)·15C5 shows a very broad structure with poor Franck-Condon factors. In addition, a remarkable cage effect in the fragmentation process after UV excitation was observed in both complex ions. In aniline·H(+)·CE complexes, the cage effect completely removed the dissociation channels of the aniline·H(+) moiety. A large difference in the fragmentation yield between dBAM·H(+)·18C6 and dBAM·H(+)·24C8 was observed due to a large barrier for releasing dBAM·H(+) from the axis of rotaxane in the latter complex.

Excited State Dynamics of Protonated Phenylalanine and Tyrosine: Photo-Induced Reactions Following Electronic Excitation.

The electronic spectroscopy and the electronic excited state properties of cold protonated phenylalanine and protonated tyrosine have been revisited on a large spectral domain and interpreted by comparison with ab initio calculations. The protonated species are stored in a cryogenically cooled Paul trap, maintained at ∼10 K, and the parent and all the photofragment ions are mass-analyzed in a time-of-flight mass spectrometer, which allows detecting the ionic species with an improved mass resolution compared to what is routinely achieved with a quadrupole mass spectrometer. These new results emphasize the competition around the band origin between two proton transfer reactions from the ammonium group toward either the aromatic chromophore or the carboxylic acid group. These reactions are initiated by the coupling of the locally excited ππ* state with higher charge transfer states, the positions and coupling of which depend on the conformation of the protonated molecules. Each of these reaction processes gives rise to specific fragmentation channels that supports the conformer selectivity observed in the photofragmentation spectra of protonated tyrosine and phenylalanine.

Excited states of proton-bound DNA/RNA base homodimers: pyrimidines.

We are presenting the electronic photofragment spectra of the protonated pyrimidine DNA base homodimers. Only the thymine dimer exhibits a well structured vibrational progression, while the protonated monomer shows broad vibrational bands. This shows that proton bonding can block some nonradiative processes present in the monomer.

Communication: identification of daughter ions through their electronic spectroscopy at low temperature.

We present experimental results on photofragmentation of cooled fragments issued from the photofragmentation of cold parent ions. The cooling of the daughter ions at a few K allows its characterization not only through its fragmentation pattern but also through its well resolved electronic spectroscopy. The proof of principle of the method is demonstrated on the photofragment resulting from Cα-Cß bond rupture in protonated tyrosine (TyrH(+)). The analysis of the daughter ion (m/z 108) photofragmentation spectrum is in agreement with the proposed mechanism implying a proton transfer to the phenyl ring as the first step of the fragmentation mechanism of TyrH(+).

Electronic and vibrational spectra of protonated benzaldehyde-water clusters, [BZ-(H2O)n≤5]H+: evidence for ground-state proton transfer to solvent for n ≥ 3.

Vibrational and electronic photodissociation spectra of mass-selected protonated benzaldehyde-(water)n clusters, [BZ-(H2O)n]H(+) with n ≤ 5, are analyzed by quantum chemical calculations to determine the protonation site in the ground electronic state (S0) and ππ(*) excited state (S1) as a function of microhydration. IR spectra of [BZ-(H2O)n]H(+) with n ≤ 2 are consistent with BZH(+)-(H2O)n type structures, in which the excess proton is localized on benzaldehyde. IR spectra of clusters with n ≥ 3 are assigned to structures, in which the excess proton is located on the (H2O)n solvent moiety, BZ-(H2O)nH(+). Quantum chemical calculations at the B3LYP, MP2, and ri-CC2 levels support the conclusion of proton transfer from BZH(+) to the solvent moiety in the S0 state for hydration sizes larger than the critical value nc = 3. The vibronic spectrum of the S1 ← S0 transition (ππ(*)) of the n = 1 cluster is consistent with a cis-BZH(+)-H2O structure in both electronic states. The large blueshift of the S1 origin by 2106 cm(-1) upon hydration with a single H2O ligand indicates that the proton affinity of BZ is substantially increased upon S1 excitation, thus strongly destabilizing the hydrogen bond to the solvent. The adiabatic S1 excitation energy and vibronic structure calculated at the ri-CC2/aug-cc-pVDZ level agrees well with the measured spectrum, supporting the notion of a cis-BZH(+)-H2O geometry. The doubly hydrated species, cis-BZH(+)-(H2O)2, does not absorb in the spectral range of 23 000-27 400 cm(-1), because of the additional large blueshift of the ππ(*) transition upon attachment of the second H2O molecule. Calculations predict roughly linear and large incremental blueshifts for the ππ(*) transition in [BZ-(H2O)n]H(+) as a function of n. In the size range n ≥ 3, the calculations predict a proton transfer from the (H2O)nH(+) solvent back to the BZ solute upon electronic ππ(*) excitation.

Development of Ultraviolet-Ultraviolet Hole-Burning Spectroscopy for Cold Gas-Phase Ions.

A new ultraviolet-ultraviolet hole-burning (UV-UV HB) spectroscopic scheme has been developed for cold gas-phase ions in a quadrupole ion trap (QIT) connected with a time-of-flight (TOF) mass spectrometer. In this method, a pump UV laser generates a population hole for the ions trapped in the cold QIT, and a second UV laser (probe) monitors the population hole for the ions extracted to the field-free region of the TOF mass spectrometer. Here, the neutral fragments generated by the UV dissociation of the ions with the second laser are detected. This UV-UV HB spectroscopy was applied to protonated dibenzylamine and to protonated uracil. Protonated uracil exhibits two strong electronic transitions; one has a band origin at 31760 cm(-1) and the other at 39000 cm(-1). From the UV-UV HB measurement and quantum chemical calculations, the lower-energy transition is assigned to the enol-keto tautomer and the higher-energy one to the enol-enol tautomer.

Electronic spectra of the protonated indole chromophore in the gas phase.

The electronic spectroscopy of cold protonated indole was investigated experimentally and theoretically. Two isomers were observed by experiment: The first isomer corresponds to the lowest-energy isomer in the calculations, absorbing at ~350 nm and protonated on the C3 atom of the pyrrole ring. According to our calculations, the absorptions of the other isomers protonated on carbon atoms (C2, C4, C5, C6, and C7) are in the visible region. Indeed, the absorption of the second observed isomer starts at 488 nm and was assigned to protonation on the C2 carbon of the pyrrole ring. Because good agreement was obtained between the calculated and experimental transitions for the observed isomers, reasonable ab initio transition energies can also be expected for the higher-energy isomers protonated on other carbon atoms, which should also absorb in the visible region. Protonation on the nitrogen atom leads to a transition that is blue-shifted with respect to that of the most stable isomer.

Ground state proton transfer in phenol-(NH3)(n) (n ≤ 11) clusters studied by mid-IR spectroscopy in 3-10 µm range.

The infrared (IR) spectra of size-selected phenol-ammonia clusters, PhOH-(NH(3))(n) (n ≤ 11) in the 3-10 µm wavelength region were measured to investigate the critical number of solvent molecules necessary to promote the ground state proton transfer (GSPT) reaction. While the N-H stretching vibrations did not provide clear information, characteristic changes that are assigned to the GSPT reaction were observed in the skeletal vibrational region. The production of phenolate anion (PhO(-)), which is a product of the GSPT reaction, was established from the appearance of characteristic bands assignable to C-C stretching and C-H bending vibrations of PhO(-) and from the corresponding disappearance of C-O-H bending vibration of PhOH at n = 9. The mid-IR spectroscopy directly proves the structural change induced by the deprotonation from the O-H bond and thus establishes the GSPT reaction as complete at n = 9. No such absorptions were observed for n ≤ 5 in line with a previous report. For n = 6-8, both the proton transferred and the nontransferred signatures were observed in the spectra, showing coexistence of both species for the first time.

Photon induced isomerization in the first excited state of the 7-azaindole-(H2O)3 cluster.

A picosecond pump and probe experiment has been applied to study the excited state dynamics of 7-azaindole-water 1 ∶ 2 and 1 ∶ 3 clusters [7AI(H(2)O)(2,3)] in the gas phase. The vibrational-mode selective Excited-State-Triple-Proton Transfer (ESTPT) in 7AI(H(2)O)(2) proposed from the frequency-resolved study has been confirmed by picosecond decays. The decay times for the vibronic states involving the ESTPT promoting mode σ(1) (850-1000 ps) are much shorter than those for the other vibronic states (2100-4600 ps). In the (1 + 1) REMPI spectrum of 7AI(H(2)O)(3) measured by nanosecond laser pulses, the vibronic bands with an energy higher than 200 cm(-1) above the origin of the S(1) state become very weak. In contrast, the vibronic bands in the same region emerge in the (1 + 1') REMPI spectrum of 7AI(H(2)O)(3) with picosecond pulses. The decay times drastically decrease when increasing the vibrational energy above 200 cm(-1). Ab initio calculations show that a second stable "cyclic-nonplanar isomer" exists in addition to a "bridged-planar isomer", and that an isomerization from a bridged-planar isomer to a cyclic-nonplanar isomer is most probably responsible for the short lifetimes of the vibronic states of 7AI(H(2)O)(3).

Role of the charge-transfer state in the electronic absorption of protonated hydrocarbon molecules.

The vibrationally resolved electronic spectra of isolated protonated polycyclic aromatic hydrocarbons (PAHs)--naphthalene, anthracene, and tetracene--have been recorded via neutral photofragment spectroscopy. The S1←S0 transitions are all in the visible region and do not show a monotonic red shift as a function of the molecular size, as observed for the neutral analogues. Comparison with ab initio calculations indicates that this behavior is due to the nature of the excited state, which has a pronounced charge-transfer character for protonated linear PAHs with an even number of aromatic rings.

Effect of protonation on the electronic structure of aromatic molecules: naphthaleneH+.

Protonated naphthalene, the smallest protonated polycyclic aromatic hydrocarbon cation, absorbs in the visible, around 500 nm, which corresponds to an unusually large red shift with respect to the neutral naphthalene counterpart.

Excited-state triple-proton transfer in 7-azaindole(H(2)O)(2) and reaction path studied by electronic spectroscopy in the gas phase and quantum chemical calculations.

We have investigated the excited-state multiple-proton/hydrogen atom transfer reactions in the 7-azaindole water clusters, [7AI](H(2)O)(n) (n = 2,3), in the gas phase by combining electronic spectroscopy and quantum chemical calculations. The fluorescence excitation (FE) spectrum of 7AI(H(2)O)(2) has been observed by monitoring visible emission. In contrast, no vibronic bands are detected in the FE spectrum of 7AI(H(2)O)(3) when the visible emission is monitored. The dispersed fluorescence spectra of 7AI(H(2)O)(n) (n = 2,3) have been measured. The excitation of +180 cm(-1) band from the electronic origin of 7AI(H(2)O)(2) enhances the visible emission as compared with the 0-0 excitation. The +180 cm(-1) band is assgined to an intermolecular mode (σ(1)) of the cyclic hydrogen-bonded ring structure. The calculated S(1)-S(0) absorption spectrum for the cyclic hydrogen-bonded structure is in agreement with the FE spectrum around the 0-0 region. The excitation of σ(1) significantly promotes the reaction and generates the tautomeric form of 7AI(H(2)O)(2). These experimental results on 7AI(H(2)O)(n) (n = 2,3) are very similar to those on 7AI(CH(3)OH)(n) (n = 2,3) and 7AI(C(2)H(5)OH)(n) (n = 2,3). We conclude that the excited-state triple proton/hydrogen atom transfer (ESTPT/HT) occurs in 7AI(H(2)O)(2). Cuts of the potential energy surfaces along the proton/hydrogen atom transfer coordinates of 7AI(H(2)O)(n) (n = 2,3) and 7AI(CH(3)OH)(n) (n = 2,3) are comparatively calculated by quantum chemistry calculations (RI-CC2/cc-pVDZ and TD-DFT(B3LYP)/cc-pVDZ) to explore the mechanism of the ESTPT/HT reaction. The calculated results suggest that concerted proton transfers occur in 7AI(H(2)O)(2) as well as in 7AI(CH(3)OH)(2), whereas the potential barrier for the excited-state quadruple proton transfer in 7AI(H(2)O)(3) and 7AI(CH(3)OH)(3) is higher than those for ESTPT. The theoretical results are consistent with the observation of ESTPT/HT in 7AI(H(2)O)(2).

Protonated benzene dimer: an experimental and ab initio study.

The excitation spectrum of the protonated benzene dimer has been recorded in the 415-600 nm wavelength range. In contrast to the neutral iso-electronic benzene dimer, its absorption spectrum extends in the visible spectral region. This huge spectral shift has been interpreted with ab initio calculations, which indicate that the first excited states should be charge transfer states.