The impact of extensive intraductal component (EIC) on the genomic risk of recurrence in early hormone receptor positive breast cancer.

BACKGROUND: Early invasive ductal carcinoma (IDC) breast cancer often presents with a coexisting ductal carcinoma in situ (DCIS) component, while about 5 % of cases present with an extensive (>25 %) intraductal component (EIC). The impact of EIC on the genomic risk of recurrence is unclear. METHODS: Patients with early hormone receptor-positive HER2neu-negative (HR + HER2-) IDC breast cancer and a known OncotypeDX Breast Recurrence Score® (RS) who underwent breast surgery at our institute were included. Using a rule-based text-analysis algorithm, we analyzed pathological reports and categorized patients into three groups: EIC, non-extensive DCIS (DCIS-L), and pure-IDC (NO-DCIS). Genomic risk was determined using OncotypeDX RS. RESULTS: A total of 33 (4.6 %) EIC cases, 377 (57.2 %) DCIS-L cases and 307 (42.8 %) NO-DCIS cases were identified. Patients in the EIC group were younger and had lower tumor grades than other groups. The distribution of genomic risk varied between the groups, with EIC tumors significantly less likely to have a high RS (>25) compared to DCIS-L and No-DCIS tumors (3 % vs 20 % and 20 %, respectively; p = 0.03). When adjusted to age, tumor size, grade and LNs involvement, both DCIS-L and NO-DCIS groups were significantly correlated with a higher probability of high RS compared to the EIC group (OR 12.3 and OR 13.1, respectively; p < 0.02). Moreover, patients with EIC had a lower likelihood for adjuvant chemotherapy recommendation. CONCLUSIONS: In early HR + HER2- IDC, an EIC correlates with a reduced genomic recurrence risk. The impact on genomic risk seems to be influenced by the extent, not merely the presence, of DCIS.

The contribution of prosody to machine classification of schizophrenia.

We show how acoustic prosodic features, such as pitch and gaps, can be used computationally for detecting symptoms of schizophrenia from a single spoken response. We compare the individual contributions of acoustic and previously-employed text modalities to the algorithmic determination whether the speaker has schizophrenia. Our classification results clearly show that we can extract relevant acoustic features better than those textual ones. We find that, when combined with those acoustic features, textual features improve classification only slightly.

Morphological characteristics of spoken language in schizophrenia patients - an exploratory study.

Psychosis is diagnosed based on disruptions in the structure and use of language, including reduced syntactic complexity, derailment, and tangentiality. With the development of computational analysis, natural language processing (NLP) techniques are used in many areas of life to make evaluations and inferences regarding people's thoughts, feelings and behavior. The present study explores morphological characteristic of schizophrenia inpatients using NLP. Transcripts of recorded stories by 49 male subjects (24 inpatients diagnosed with schizophrenia and 25 controls) about 14 Thematic Apperception Test (TAT) pictures were morphologically analyzed. Relative to the control group, the schizophrenic inpatients employed: (1) a similar ratio of nouns, but fewer verbs, adjectives and adverbs; (2) a higher ratio of lemmas to token (LTR) and type to token (TTR); (3) a smaller gap between LTR and TTR; and (4) greater use of the first person. The results were cross-verified using three well-known fitting classifier algorithms (Random Forest, XGBoost and a support vector machine). Tests of prediction accuracy, precision and recall found correct attribution of patients to the schizophrenia group at a rate of between 80 and 90%. Overall, the results suggest that the language of schizophrenic inpatients is significantly different from that of healthy controls, being morphologically less complex, more associative and more focused on the self. The findings support NLP analysis as a complementary addition to the traditional clinical psychosis evaluation for schizophrenia.

The impact of tumor detection method on genomic and clinical risk and chemotherapy recommendation in early hormone receptor positive breast cancer.

BACKGROUND: Symptomatic breast cancers share aggressive clinico-pathological characteristics compared to screen-detected breast cancers. We assessed the association between the method of cancer detection and genomic and clinical risk, and its effect on adjuvant chemotherapy recommendations. PATIENTS AND METHODS: Patients with early hormone receptor positive (HR+) HER2neu-negative (HER2-) breast cancer, and known OncotypeDX Breast Recurrence Score test were included. A natural language processing (NLP) algorithm was used to identify the method of cancer detection. The clinical and genomic risks of symptomatic and screen-detected tumors were compared. RESULTS: The NLP algorithm identified the method of detection of 401 patients, with 216 (54%) diagnosed by routine screening, and the remainder secondary to symptoms. The distribution of OncotypeDX recurrence score (RS) varied between the groups. In the symptomatic group there were lower proportions of low RS (13% vs 23%) and higher proportions of high RS (24% vs. 13%) compared to the screen-detected group. Symptomatic tumors were significantly more likely to have a high clinical risk (59% vs 40%). Based on genomic and clinical risk and current guidelines, we found that women aged 50 and under, with a symptomatic cancer, had an increased probability of receiving adjuvant chemotherapy recommendation compared to women with screen-detected cancers (60% vs. 37%). CONCLUSIONS: We demonstrated an association between the method of cancer detection and both genomic and clinical risk. Symptomatic breast cancer, especially in young women, remains a poor prognostic factor that should be taken into account when evaluating patient prognosis and determining adjuvant treatment plans.

The length of a scroll: Quantitative evaluation of material reconstructions.

Scholars have used mathematical models to estimate the missing length of deteriorated scrolls from ancient Egypt, Qumran, Herculaneum, and elsewhere. Based on such estimations, the content of ancient literature as well as the process of its composition is deduced. Though theoretically reasonable, many practical problems interfere with the method. In the current study, the empirical validity of these mathematical models is examined, showing that highly significant errors are quite frequent. When applied to comparatively intact scrolls, the largest contribution to errors is the subjectivity inherent in measuring patterns of damaged areas. In less well preserved scrolls, deterioration and deformation are more central causes of errors. Another factor is the quality of imaging. Hence, even after maximal reduction of interfering factors, one should only use these estimation methods in conjunction with other supporting considerations. Accordingly, past uses of this approach should be reevaluated, which may have substantial implications for the study of antiquity.

Honest universality.

We extend the notion of universality of a function, due to Turing, to arbitrary (countable) effective domains, taking care to disallow any cheating on the part of the representations used. Then, we can be certain that effective universal functions cannot simulate non-effective functions.