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1.
Biochim Biophys Acta Bioenerg ; 1864(2): 148957, 2023 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-36709837

RESUMO

The electron transfer reactions within wild-type Rhodobacter sphaeroides cytochrome bc1 (cyt bc1) were studied using a binuclear ruthenium complex to rapidly photooxidize cyt c1. When cyt c1, the iron­sulfur center Fe2S2, and cyt bH were reduced before the reaction, photooxidation of cyt c1 led to electron transfer from Fe2S2 to cyt c1 with a rate constant of ka = 80,000 s-1, followed by bifurcated reduction of both Fe2S2 and cyt bL by QH2 in the Qo site with a rate constant of k2 = 3000 s-1. The resulting Q then traveled from the Qo site to the Qi site and oxidized one equivalent each of cyt bL and cyt bH with a rate constant of k3 = 340 s-1. The rate constant ka was decreased in a nonlinear fashion by a factor of 53 as the viscosity was increased to 13.7. A mechanism that is consistent with the effect of viscosity involves rotational diffusion of the iron­sulfur protein from the b state with reduced Fe2S2 close to cyt bL to one or more intermediate states, followed by rotation to the final c1 state with Fe2S2 close to cyt c1, and rapid electron transfer to cyt c1.


Assuntos
Citocromos b , Proteínas Ferro-Enxofre , Citocromos b/metabolismo , Oxirredução , Citocromos c/metabolismo , Citocromos c1/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Rotação , Elétrons
2.
Cells ; 11(24)2022 12 12.
Artigo em Inglês | MEDLINE | ID: mdl-36552779

RESUMO

Cytochrome c (Cc) underwent accelerated evolution from the stem of the anthropoid primates to humans. Of the 11 amino acid changes that occurred from horse Cc to human Cc, five were at Cc residues near the binding site of the Cc:CcO complex. Single-point mutants of horse and human Cc were made at each of these positions. The Cc:CcO dissociation constant KD of the horse mutants decreased in the order: T89E > native horse Cc > V11I Cc > Q12M > D50A > A83V > native human. The largest effect was observed for the mutants at residue 50, where the horse Cc D50A mutant decreased KD from 28.4 to 11.8 µM, and the human Cc A50D increased KD from 4.7 to 15.7 µM. To investigate the role of Cc phosphorylation in regulating the reaction with CcO, phosphomimetic human Cc mutants were prepared. The Cc T28E, S47E, and Y48E mutants increased the dissociation rate constant kd, decreased the formation rate constant kf, and increased the equilibrium dissociation constant KD of the Cc:CcO complex. These studies indicate that phosphorylation of these residues plays an important role in regulating mitochondrial electron transport and membrane potential ΔΨ.


Assuntos
Citocromos c , Complexo IV da Cadeia de Transporte de Elétrons , Animais , Humanos , Citocromos c/genética , Citocromos c/metabolismo , Transporte de Elétrons , Complexo IV da Cadeia de Transporte de Elétrons/genética , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Cavalos/genética , Cavalos/metabolismo , Fosforilação , Primatas/genética , Primatas/metabolismo , Evolução Molecular
3.
Biochemistry ; 58(40): 4125-4135, 2019 10 08.
Artigo em Inglês | MEDLINE | ID: mdl-31532642

RESUMO

The reaction between cytochrome c (Cc) and cytochrome c oxidase (CcO) was studied using horse cytochrome c derivatives labeled with ruthenium trisbipyridine at Cys 39 (Ru-39-Cc). Flash photolysis of a 1:1 complex between Ru-39-Cc and bovine CcO at a low ionic strength resulted in the electron transfer from photoreduced heme c to CuA with an intracomplex rate constant of k3 = 6 × 104 s-1. The K13A, K72A, K86A, and K87A Ru-39-Cc mutants had nearly the same k3 value but bound much more weakly to bovine CcO than wild-type Ru-39-Cc, indicating that lysines 13, 72, 86, and 87 were involved in electrostatic binding to CcO, but were not involved in the electron transfer pathway. The Rhodobacter sphaeroides (Rs) W143F mutant (bovine W104) caused a 450-fold decrease in k3 but did not affect the binding strength with CcO or the redox potential of CuA. These results are consistent with a computational model for Cc-CcO (Roberts and Pique ( 1999 ) J. Biol. Chem. 274 , 38051 - 38060 ) with the following electron transfer pathway: heme c → CcO-W104 → CcO-M207 → CuA. A crystal structure for the Cc-CcO complex with the proposed electron transfer pathway heme c → Cc-C14 → Cc-K13 → CcO-Y105 → CcO-M207 → CuA ( S. Shimada ( 2017 ) EMBO J. 36 , 291 - 300 ) is not consistent with the kinetic results because the K13A mutation had no effect on k3. Addition of 40% ethylene glycol (as present during the crystal preparation) decreased k3 significantly, indicating that it affected the conformation of the complex. This may explain the discrepancy between the current results and the crystallographic structure.


Assuntos
Citocromos c/química , Complexo IV da Cadeia de Transporte de Elétrons/química , Animais , Bovinos , Complexos de Coordenação/química , Cobre/química , Citocromos c/genética , Transporte de Elétrons , Etilenoglicol/química , Heme/química , Cavalos , Mutação , Fotólise , Domínios Proteicos , Rutênio/química , Rutênio/efeitos da radiação
4.
Soft Matter ; 11(15): 2906-2908, 2015 Apr 21.
Artigo em Inglês | MEDLINE | ID: mdl-25763882

RESUMO

As a surrogate of live cells, proteo-lipobeads are presented, encapsulating functional membrane proteins in a strict orientation into a lipid bilayer. Assays can be performed just as on live cells, for example using fluorescence measurements. As a proof of concept, we have demonstrated proton transport through cytochrome c oxidase.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons/química , Bicamadas Lipídicas/química , Sefarose/química , Biomimética , Fluorescência , Corantes Fluorescentes/química
5.
Forensic Sci Int ; 229(1-3): 1-6, 2013 Jun 10.
Artigo em Inglês | MEDLINE | ID: mdl-23683902

RESUMO

JWH-018 (1-pentyl-3-(1-naphthoyl)indole) is one of numerous potential aminoalkylindoles contained in products marketed as 'K2' or 'Spice'. Investigation of the urinary metabolites from consumption of these compounds is important because they are banned in the United States and many European countries. An efficient extraction procedure and gas chromatography-mass spectrometry (GC-MS) method were developed for detection of 'K2' metabolites in urine from individuals suspected of using these products. Analytical standards were used to elucidate the structure-specific mass spectral fragmentations and retention properties to confirm proposed identifications and support quantitative studies. A procedure for the synthesis of one of these metabolites (5-hydroxypentyl JWH-018) was also developed. Results are comparable to existing LC-MS/MS methods, with the same primary metabolites detected. The specific metabolite hydrolysis products include 4-hydroxpentyl, 5-hydroxypentyl, and N-pentanoic acid derivatives.


Assuntos
Cromatografia Gasosa-Espectrometria de Massas , Drogas Ilícitas/urina , Indóis/urina , Naftalenos/urina , Humanos , Ácidos Pentanoicos/urina , Extração em Fase Sólida , Detecção do Abuso de Substâncias
6.
Biochim Biophys Acta ; 1827(11-12): 1309-19, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-22985600

RESUMO

The cytochrome bc1 complex (ubiquinone:cytochrome c oxidoreductase) is the central integral membrane protein in the mitochondrial respiratory chain as well as the electron-transfer chains of many respiratory and photosynthetic prokaryotes. Based on X-ray crystallographic studies of cytochrome bc1, a mechanism has been proposed in which the extrinsic domain of the iron-sulfur protein first binds to cytochrome b where it accepts an electron from ubiquinol in the Qo site, and then rotates by 57° to a position close to cytochrome c1 where it transfers an electron to cytochrome c1. This review describes the development of a ruthenium photooxidation technique to measure key electron transfer steps in cytochrome bc1, including rapid electron transfer from the iron-sulfur protein to cytochrome c1. It was discovered that this reaction is rate-limited by the rotational dynamics of the iron-sulfur protein rather than true electron transfer. A conformational linkage between the occupant of the Qo ubiquinol binding site and the rotational dynamics of the iron-sulfur protein was discovered which could play a role in the bifurcated oxidation of ubiquinol. A ruthenium photoexcitation method is also described for the measurement of electron transfer from cytochrome c1 to cytochrome c. This article is part of a Special Issue entitled: Respiratory Complex III and related bc complexes.


Assuntos
Citocromos c/química , Complexo III da Cadeia de Transporte de Elétrons/química , Compostos Organometálicos/química , Rutênio/química , Citocromos c/metabolismo , Citocromos c1/metabolismo , Transporte de Elétrons , Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Modelos Moleculares , Compostos Organometálicos/metabolismo , Oxirredução/efeitos da radiação , Conformação Proteica , Rutênio/metabolismo , Ubiquinona/análogos & derivados , Ubiquinona/química , Ubiquinona/metabolismo
7.
Biochim Biophys Acta ; 1817(4): 567-74, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21939635

RESUMO

This review describes the development and application of photoactive ruthenium complexes to study electron transfer and proton pumping reactions in cytochrome c oxidase (CcO). CcO uses four electrons from Cc to reduce O(2) to two waters, and pumps four protons across the membrane. The electron transfer reactions in cytochrome oxidase are very rapid, and cannot be resolved by stopped-flow mixing techniques. Methods have been developed to covalently attach a photoactive tris(bipyridine)ruthenium group [Ru(II)] to Cc to form Ru-39-Cc. Photoexcitation of Ru(II) to the excited state Ru(II*), a strong reductant, leads to rapid electron transfer to the ferric heme group in Cc, followed by electron transfer to Cu(A) in CcO with a rate constant of 60,000s(-1). Ruthenium kinetics and mutagenesis studies have been used to define the domain for the interaction between Cc and CcO. New ruthenium dimers have also been developed to rapidly inject electrons into Cu(A) of CcO with yields as high as 60%, allowing measurement of the kinetics of electron transfer and proton release at each step in the oxygen reduction mechanism.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons/química , Compostos Organometálicos/química , Prótons , Rutênio/química , Animais , Transporte Biológico/efeitos da radiação , Bovinos , Citocromos c/química , Citocromos c/metabolismo , Transporte de Elétrons/efeitos da radiação , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Modelos Moleculares , Compostos Organometálicos/metabolismo , Oxirredução/efeitos da radiação , Rutênio/metabolismo
8.
Biochemistry ; 50(48): 10462-72, 2011 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-22026826

RESUMO

Domain rotation of the Rieske iron-sulfur protein (ISP) between the cytochrome (cyt) b and cyt c(1) redox centers plays a key role in the mechanism of the cyt bc(1) complex. Electron transfer within the cyt bc(1) complex of Paracoccus denitrificans was studied using a ruthenium dimer to rapidly photo-oxidize cyt c(1) within 1 µs and initiate the reaction. In the absence of any added quinol or inhibitor of the bc(1) complex at pH 8.0, electron transfer from reduced ISP to cyt c(1) was biphasic with rate constants of k(1f) = 6300 ± 3000 s(-1)and k(1s) = 640 ± 300 s(-1) and amplitudes of 10 ± 3% and 16 ± 4% of the total amount of cyt c(1) photooxidized. Upon addition of any of the P(m) type inhibitors MOA-stilbene, myxothiazol, or azoxystrobin to cyt bc(1) in the absence of quinol, the total amplitude increased 2-fold, consistent with a decrease in redox potential of the ISP. In addition, the relative amplitude of the fast phase increased significantly, consistent with a change in the dynamics of the ISP domain rotation. In contrast, addition of the P(f) type inhibitors JG-144 and famoxadone decreased the rate constant k(1f) by 5-10-fold and increased the amplitude over 2-fold. Addition of quinol substrate in the absence of inhibitors led to a 2-fold increase in the amplitude of the k(1f) phase. The effect of QH(2) on the kinetics of electron transfer from reduced ISP to cyt c(1) was thus similar to that of the P(m) inhibitors and very different from that of the P(f) inhibitors. The current results indicate that the species occupying the Q(o) site has a significant conformational influence on the dynamics of the ISP domain rotation.


Assuntos
Benzoquinonas/química , Complexo III da Cadeia de Transporte de Elétrons/química , Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Paracoccus denitrificans/enzimologia , Fotólise , Benzoquinonas/metabolismo , Transporte de Elétrons , Complexo III da Cadeia de Transporte de Elétrons/antagonistas & inibidores , Estrutura Terciária de Proteína , Transporte Proteico , Rutênio/química
9.
Biochim Biophys Acta ; 1807(11): 1383-9, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21856278

RESUMO

The cytochrome bc(1) complex is a key component in several respiratory pathways. One of the characteristics of the eukaryotic complex is the presence of a small acidic subunit, which is thought to guide the interaction of the complex with its electron acceptor and facilitate electron transfer. Paracoccus denitrificans represents the only example of a prokaryotic organism in which a highly acidic domain is covalently fused to the cytochrome c(1) subunit. In this work, a deletion variant lacking this acidic domain has been produced and purified by affinity chromatography. The complex is fully intact as shown by its X-ray structure, and is a dimer (Kleinschroth et al., subm.) compared to the tetrameric (dimer-of-dimer) state of the wild-type. The variant complex is studied by steady-state kinetics and flash photolysis, showing wild type turnover and a virtually identical interaction with its substrate cytochrome c(552).


Assuntos
Proteínas de Bactérias/química , Grupo dos Citocromos c/metabolismo , Citocromos c1/química , Complexo III da Cadeia de Transporte de Elétrons/química , Transporte de Elétrons/fisiologia , Paracoccus denitrificans/química , Subunidades Proteicas/química , Animais , Proteínas de Bactérias/metabolismo , Cristalografia por Raios X , Grupo dos Citocromos c/química , Citocromos c1/metabolismo , Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Paracoccus denitrificans/metabolismo , Conformação Proteica , Subunidades Proteicas/metabolismo
10.
J Forensic Sci ; 56(2): 381-9, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21265833

RESUMO

The chemical composition of fingermarks could potentially be important for determining investigative leads, placing individuals at the time of a crime, and has applications as biomarkers of disease. Fingermark samples containing triacylglycerols (TAGs) and other components were analyzed using laser desorption/ionization (LDI) time-of-flight mass spectrometry (TOF MS). Only LDI appeared to be useful for this application while conventional matrix-assisted LDI-TOF MS was not. Tandem MS was used to identify/confirm selected TAGs. A limited gender comparison, based on a simple t-distribution and peaks intensities, indicated that two TAGs showed gender specificity at the 95% confidence level and two others at 97.5% confidence. Because gender-related TAGs differences were most often close to the standard deviation of the measurements, the majority of the TAGs showed no gender specificity. Thus, LDI-TOF MS is not a reliable indicator of gender based on fingermark analysis. Cosmetic ingredients present in some samples were identified.


Assuntos
Dermatoglifia , Triglicerídeos/análise , Adulto , Cosméticos/química , Ácidos Graxos/análise , Feminino , Humanos , Masculino , Reprodutibilidade dos Testes , Caracteres Sexuais , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
11.
J Lipid Res ; 51(8): 2428-34, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20447931

RESUMO

Phospholipids and triacylglycerols (TAGs) are important classes of lipids in biological systems. Rapid methods have been developed for their characterization in crude samples, including MALDI time-of-flight MS. For mixtures, MALDI often selectively shows only some components. For example, phosphatidylcholine (PC) suppresses detection of other lipids. Most rapid MS methods detect either TAGs or phospholipids but not both. Herein, we demonstrate a simple approach to rapidly screen mixtures containing multiple lipid classes. To validate this approach, reference lipids [PC, tripalmitin (PPP), and phosphatidyl-ethanolamine (PE)] and real samples (beef, egg yolk) were used. In a binary mixture with a strong suppressor (PC), PPP was greatly suppressed. After a simple separation, suppression was virtually eliminated. A mixture of nominally nonsuppressing lipids (PE and PPP) was not adversely affected by separation. Ground beef and egg yolk were used to demonstrate detection of known lipid compositions where other methods have missed one or more lipids or lipid classes. Separation was performed using solid phase extraction with a PrepSep florisil column. A 10 min separation allows rapid screening for lipids and changes in lipids. It is sufficient to clearly detect all lipids and overcome suppression effects in complex lipid mixtures.


Assuntos
Fracionamento Químico/métodos , Fosfatidilcolinas/isolamento & purificação , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Triglicerídeos/isolamento & purificação , Artefatos , Gema de Ovo/química , Carne/análise , Fosfatidilcolinas/análise , Padrões de Referência , Reprodutibilidade dos Testes , Extração em Fase Sólida , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/normas , Fatores de Tempo , Triglicerídeos/análise
12.
Methods Enzymol ; 456: 95-109, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19348884

RESUMO

Ruthenium photooxidation methods are presented to study electron transfer between the cytochrome bc(1) complex and cytochrome c and within the cytochrome bc(1) complex. Methods are described to prepare a ruthenium cytochrome c derivative, Ru(z)-39-Cc, by labeling the single sulfhydryl on yeast H39C;C102T iso-1-Cc with the reagent Ru(bpz)(2)(4-bromomethyl-4'-methylbipyridine). The ruthenium complex attached to Cys-39 on the opposite side of Cc from the heme crevice does not affect the interaction with cyt bc(1). Laser excitation of reduced Ru(z)-39-Cc results in photooxidation of heme c within 1 microsec with a yield of 20%. Flash photolysis of a 1:1 complex between reduced yeast cytochrome bc(1) and Ru(z)-39-Cc leads to electron transfer from heme c(1) to heme c with a rate constant of 1.4 x 10(4) s(-1). Methods are described for the use of the ruthenium dimer, Ru(2)D, to photooxidize cyt c(1) in the cytochrome bc(1) complex within 1 microsec with a yield of 20%. Electron transfer from the Rieske iron-sulfur center [2Fe2S] to cyt c(1) was detected with a rate constant of 6 x 10(4) s(-1) in R. sphaeroides cyt bc(1) with this method. This electron transfer step is rate-limited by the rotation of the Rieske iron-sulfur protein in a conformational gating mechanism. This method provides critical information on the dynamics of rotation of the iron-sulfur protein (ISP) as it transfers electrons from QH(2) in the Q(o) site to cyt c(1). These ruthenium photooxidation methods can be used to measure many of the electron transfer reactions in cytochrome bc(1) complexes from any source.


Assuntos
Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Rutênio/química , Citocromos/biossíntese , Transporte de Elétrons , Complexo III da Cadeia de Transporte de Elétrons/química , Cinética , Oxirredução , Fotoquímica
13.
Methods Enzymol ; 456: 507-20, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19348907

RESUMO

Ruthenium photoreduction methods are described to study electron transfer from cytochrome c to cytochrome c oxidase and within cytochrome oxidase. Methods are described to prepare a ruthenium cytochrome c derivative Ru-39-Cc, by labeling the single sulfhydryl group on horse K39C with (4-bromomethyl-4'methylbipyridine) (bis-bipyridine)ruthenium(II). The ruthenium complex attached to Cys-39 on the opposite side of the heme crevice does not interfere with the interaction with cytochrome oxidase. Laser flash photolysis of a 1:1 complex between Ru-39-Cc and bovine cytochrome oxidase results in photoreduction of heme c within 1 microsec, followed by electron transfer from heme c to Cu(A) in cytochrome oxidase with a rate constant of 60,000 s(-1) and from Cu(A) to heme a with a rate constant of 20,000 s(-1). A new ruthenium dimer, Ru(2)Z, has been developed to reduce Cu(A) within 1 microsec with a yield of 60%, followed by electron transfer from Cu(A) to heme a and then to the heme a(3)/Cu(B) binuclear center. Methods are described to measure the single-electron reduction of each of the intermediates involved in reduction of oxygen to water by cytochrome oxidase, including P(m), F, O(H), and E.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons/química , Fotoquímica , Rutênio/química , Transporte de Elétrons , Oxirredução
14.
Biochemistry ; 47(49): 12974-84, 2008 Dec 09.
Artigo em Inglês | MEDLINE | ID: mdl-19006325

RESUMO

Electron transfer (ET) between Paracoccus denitrificans cytochrome (cyt) c(1) and cytochrome c(552) was studied using the soluble redox fragments cyt c(1CF) and cyt c(552F). A new ruthenium cyt c(552F) derivative labeled at C23 (Ru(z)-23-c(552F)) was designed to measure rapid electron transfer with cyt c(1CF) in the physiological direction using flash photolysis. The bimolecular rate constant k(12) decreased rapidly with ionic strength above 40 mM, consistent with a diffusional process guided by long-range electrostatic interactions between the two proteins. However, a new kinetic phase was detected at an ionic strength of <35 mM with the ruthenium photoexcitation technique in which k(12) became very rapid (3 x 10(9) M(-1) s(-1)) and nearly independent of ionic strength, suggesting that the reaction became so fast that it was controlled by short-range diffusion along the protein surfaces guided by hydrophobic interactions. These results are consistent with a two-step model for formation of the final encounter complex. No intracomplex electron transfer between Ru(z)-23-c(552F) and c(1CF) was observed even at the lowest ionic strength, indicating that the dissociation constant of the complex was >30 microM. On the other hand, the ruthenium-labeled yeast cytochrome c derivative Ru(z)-39-Cc formed a tight 1:1 complex with cyt c(1CF) at ionic strengths of <60 mM with an intracomplex electron transfer rate constant of 50000 s(-1). A group of cyt c(1CF) variants in the presumed docking site were generated on the basis of information from the yeast cyt bc(1)-cyt c cocrystal structure. Kinetic analysis of cyt c(1CF) mutants located near the heme crevice provided preliminary identification of the interaction site for cyt c(552F) and suggested that formation of the encounter complex is guided primarily by the overall electrostatic surface potential rather than by defined ions.


Assuntos
Grupo dos Citocromos c/genética , Grupo dos Citocromos c/metabolismo , Citocromos c1/genética , Citocromos c1/metabolismo , Mutagênese , Paracoccus denitrificans/enzimologia , Sítios de Ligação , Cristalografia por Raios X , Grupo dos Citocromos c/química , Citocromos c1/química , Transporte de Elétrons , Heme/química , Interações Hidrofóbicas e Hidrofílicas , Cinética , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Concentração Osmolar , Oxirredução , Subunidades Proteicas , Rutênio/química
15.
Biochemistry ; 47(44): 11499-509, 2008 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-18847227

RESUMO

Eukaryotic cytochrome c oxidase (CcO) and homologous prokaryotic forms of Rhodobacter and Paraccocus differ in the EPR spectrum of heme a. It was noted that a histidine ligand of heme a (H102) is hydrogen bonded to serine in Rhodobacter (S44) and Paraccocus CcOs, in contrast to glycine in the bovine enzyme. Mutation of S44 to glycine shifts the heme a EPR signal from g(z) = 2.82 to 2.86, closer to bovine heme a at 3.03, without modifying other properties. Mutation to aspartate, however, results in an oppositely shifted and split heme a EPR signal of g(z) = 2.72/2.78, accompanied by lower activity and drastically inhibited intrinsic electron transfer from CuA to heme a. This intrinsic rate is biphasic; the proportion that is slow is pH dependent, as is the relative intensity of the two EPR signal components. At pH 8, the heme a EPR signal at 2.72 is most intense, and the electron transfer rate (CuA to heme a) is 10-130 s(-1), compared to wild-type at 90,000 s(-1). At pH 5.5, the signal at 2.78 is intensified, and a biphasic rate is observed, 50% fast (approximately wild type) and 50% slow (90 s(-1)). The data support the prediction that the hydrogen-bonding partner of the histidine ligand of heme a is one determinant of the EPR spectral difference between bovine and bacterial CcO. We further demonstrate that the heme a redox potential can be dramatically altered by a nearby carboxyl, whose protonation leads to a proton-coupled electron transfer process.


Assuntos
Cobre/química , Complexo IV da Cadeia de Transporte de Elétrons/química , Complexo IV da Cadeia de Transporte de Elétrons/genética , Heme/análogos & derivados , Substituição de Aminoácidos , Animais , Sequência de Bases , Bovinos , Primers do DNA/genética , Espectroscopia de Ressonância de Spin Eletrônica , Transporte de Elétrons , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Heme/química , Cinética , Modelos Moleculares , Mutagênese Sítio-Dirigida , Conformação Proteica , Prótons , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Rhodobacter sphaeroides/enzimologia , Rhodobacter sphaeroides/genética , Espectrofotometria
16.
Biochemistry ; 46(50): 14610-8, 2007 Dec 18.
Artigo em Inglês | MEDLINE | ID: mdl-18027981

RESUMO

The first step in the catalytic cycle of cytochrome oxidase, the one-electron reduction of the fully oxidized enzyme, was investigated using a new photoactive binuclear ruthenium complex, [Ru(bipyrazine)2]2(quaterpyridine), (Ru2Z). The aim of the work was to examine differences in the redox kinetics resulting from pulsing the oxidase (i.e., fully reducing the enzyme followed by reoxidation) just prior to photoreduction. Recent reports indicate transient changes in the redox behavior of the metal centers upon pulsing. The new photoreductant has a large quantum yield, allowing the kinetics data to be acquired in a single flash. The net charge of +4 on Ru2Z allows it to bind electrostatically near CuA in subunit II of cytochrome oxidase. The photoexcited state Ru(II*) of Ru2Z is reduced to Ru(I) by the sacrificial electron donor aniline, and Ru(I) then reduces CuA with yields up to 60%. A stopped-flow-flash technique was used to form the pulsed state of cytochrome oxidase (the "OH" state) from several sources (bovine heart mitochondria, Rhodobacter sphaeroides, and Paracoccus denitrificans). Upon mixing the fully reduced anaerobic enzyme with oxygenated buffer containing Ru2Z, the oxidized OH state was formed within 5 ms. Ru2Z was then excited with a laser flash to inject one electron into CuA. Electron transfer from CuA --> heme a --> heme a3/CuB was monitored by optical spectroscopy, and the results were compared with the enzyme that had not been pulsed to the OH state. Pulsing had a significant effect in the case of the bovine oxidase, but this was not observed with the bacterial oxidases. Electron transfer from CuA to heme a occurred with a rate constant of 20,000 s-1 with the bovine cytochrome oxidase, regardless of whether the enzyme had been pulsed. However, electron transfer from heme a to the heme a3/CuB center in the pulsed form was 63% complete and occurred with biphasic kinetics with rate constants of 750 s-1 and 110 s-1 and relative amplitudes of 25% and 75%. In contrast, one-electron injection into the nonpulsed O form of the bovine oxidase was only 30% complete and occurred with monophasic kinetics with a rate constant of 90 s-1. This is the first indication of a difference between the fast form of the bovine oxidase and the pulsed OH form. No reduction of heme a3 is observed, indicating that CuB is the initial electron acceptor in the one-electron reduced pulsed bovine oxidase.


Assuntos
Detergentes/química , Complexo IV da Cadeia de Transporte de Elétrons/química , Rutênio/química , Animais , Bovinos , Detergentes/metabolismo , Transporte de Elétrons , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Modelos Moleculares , Estrutura Molecular , Oxirredução , Rutênio/metabolismo , Solubilidade
17.
Rapid Commun Mass Spectrom ; 21(13): 1951-7, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17526066

RESUMO

Edible oils consist primarily of triacylglycerols (TAGs). Matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectra of the oils are typically dominated by sodium adducts of these TAGs but also show prominent fragment ions (that do not contain sodium), which can interfere with analytical measurements of other components in oils. The fragments seemingly correspond to the loss of a fatty acid moiety from the sodiated TAGs as a sodium salt: RCOONa. However, a previous study suggested that the fragments actually arise from nearly complete fragmentation of unseen protonated TAGs. These authors suggested that the fragmentation occurs so rapidly and completely that protonated TAGs are not normally observed in the spectra of these oils. In this paper, we present evidence to support their theory and also demonstrate an approach to eliminate these interfering ions from the MALDI-TOF mass spectra via addition of a base to the matrix/sample mixture. The added base does not impede formation of the sodiated TAGs, but does significantly reduce the amount of fragments observed. We propose that this occurs by depleting the H+ ions from the matrix, thus preventing the formation of significant numbers of protonated TAGs in the first place. For measurements by MALDI-TOF, the relative abundances of the fragment ions are related to the strength of the base, and can be almost completely eliminated. However, in longer time-scale experiments such as in post-source decay and Fourier transform mass spectrometry, sodiated and non-sodiated diacylglycerol (DAG)-like fragments are present in spectra, regardless of whether or not a base is added to the sample.


Assuntos
Óleos de Plantas/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Triglicerídeos/análise , Amônia/farmacologia , Carbonatos/farmacologia , Gentisatos/química , Hexanos/química , Metanol/química , Peso Molecular , Prótons , Hidróxido de Sódio/farmacologia , Solventes/química , Água/química
18.
Biochemistry ; 46(7): 1791-8, 2007 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-17253777

RESUMO

Long-range movement of the Rieske iron-sulfur protein (ISP) between the cytochrome (cyt) b and cyt c1 redox centers plays a key role in electron transfer within the cyt bc1 complex. A series of 21 mutants in the cyt b ef loop of Rhodobacter sphaeroides cyt bc1 were prepared to examine the role of this loop in controlling the capture and release of the ISP from cyt b. Electron transfer in the cyt bc1 complex was studied using a ruthenium dimer to rapidly photo-oxidize cyt c1 within 1 mus and initiate the reaction. The rate constant for electron transfer from the Rieske iron-sulfur center [2Fe2S] to cyt c1 was k1 = 60 000 s-1. Famoxadone binding to the Qo site decreases k1 to 5400 s-1, indicating that a conformational change on the surface of cyt b decreases the rate of release of the ISP from cyt b. The mutation I292A on the surface of the ISP-binding crater decreased k1 to 4400 s-1, while the addition of famoxadone further decreased it to 3000 s-1. The mutation L286A at the tip of the ef loop decreased k1 to 33 000 s-1, but famoxadone binding caused no further decrease, suggesting that this mutation blocked the conformational change induced by famoxadone. Studies of all of the mutants provide further evidence that the ef loop plays an important role in regulating the domain movement of the ISP to facilitate productive electron transfer and prevent short-circuit reactions.


Assuntos
Citocromos b/química , Complexo III da Cadeia de Transporte de Elétrons/química , Proteínas Ferro-Enxofre/química , Citocromos b/genética , Citocromos b/efeitos da radiação , Transporte de Elétrons , Luz , Modelos Moleculares , Mutação , Compostos Organometálicos/química , Oxirredução , Rhodobacter sphaeroides/metabolismo , Rutênio
19.
Biochim Biophys Acta ; 1757(9-10): 1122-32, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16938268

RESUMO

The P(M)-->F transition of the catalytic cycle of cytochrome c oxidase from bovine heart was investigated using single-electron photoreduction and monitoring the subsequent events using spectroscopic and electometric techniques. The P(M) state of the oxidase was generated by exposing the oxidized enzyme to CO plus O2. Photoreduction results in rapid electron transfer from heme a to oxoferryl heme a3 with a time constant of about 0.3 ms, as indicated by transients at 605 nm and 580 nm. This rate is approximately 5-fold more rapid than the rate of electron transfer from heme a to heme a3 in the F-->O transition, but is significantly slower than formation of the F state from the P(R) intermediate in the reaction of the fully reduced enzyme with O2 to form state F (70-90 micros). The approximately 0.3 ms P(M)-->F transition is coincident with a rapid photonic phase of transmembrane voltage generation, but a significant part of the voltage associated with the P(M)-->F transition is generated much later, with a time constant of 1.3 ms. In addition, the P(M)-->F transition of the R. sphaeroides oxidase was also measured and also was shown to have two phases of electrogenic proton transfer, with tau values of 0.18 and 0.85 ms.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons/química , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Elétrons , Rhodobacter sphaeroides/enzimologia , Animais , Sítios de Ligação , Monóxido de Carbono/metabolismo , Bovinos , Cobre/metabolismo , Heme/metabolismo , Cinética , Oxirredução , Oxigênio/metabolismo , Fotoquímica , Prótons
20.
Inorg Chem ; 45(10): 3843-5, 2006 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-16676938

RESUMO

Microwave reaction of RuCl3 with 2,2'-bipyridinyl-4,4'-dicarboxylic acid diethyl ester (debpy) in ethylene glycol generated Ru(bpy)3(2+) instead of the expected Ru(debpy)3(2+). Gas chromatography-mass spectrometry analysis of the headspace revealed CO2, and Ru(bpy)3(2+) was recovered from the filtrate. Further experiments suggest that RuCl3 decarboxylates debpy during microwave synthesis.


Assuntos
Ésteres/química , Ésteres/efeitos da radiação , Micro-Ondas , Compostos Organometálicos/síntese química , Compostos Organometálicos/efeitos da radiação , Piridinas/química , Piridinas/efeitos da radiação , Rutênio/química , Rutênio/efeitos da radiação , Descarboxilação , Cromatografia Gasosa-Espectrometria de Massas , Espectroscopia de Ressonância Magnética/métodos , Compostos Organometálicos/química , Sensibilidade e Especificidade
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