Long-term Ecological Research: Chasing fashions or being prepared for fashion changes?

Long-term-ecological-research (LTER) faces many challenges, including the difficulty of obtaining long-term funding, changes in research questions and sampling designs, keeping researchers collecting standardized data for many years, impediments to interactions with local people, and the difficulty of integrating the needs of local decision makers with "big science". These issues result in a lack of universally accepted guidelines as to how research should be done and integrated among LTER sites. Here we discuss how the RAPELD (standardized field infrastructure system), can help deal with these issues as a complementary technique in LTER studies, allowing comparisons across landscapes and ecosystems and reducing sampling costs. RAPELD uses local surveys to understand broad spatial and temporal patterns while enhancing decision-making and training of researchers, local indigenous groups and traditional communities. Sampling of ecological data can be carried out by different researchers through standardized protocols, resulting in spatial data that can be used to answer temporal questions, and allow new questions to be investigated. Results can also be integrated into existing biodiversity networks. Integrated systems are the most efficient way to save resources, maximize results, and accumulate information that can be used in the face of the unknown unknowns upon which our future depends.

Long-term standardized ecological research in an Amazonian savanna: a laboratory under threat.

A few decades ago, researchers from the National Institute for Amazonian Research (INPA) started a pilot study to integrate the ecological studies of several organisms using monitoring plots, which then became the embryo for the creation of the RAPELD (Rapid Assessments and Long-term Ecological Research) system used by the Program for Biodiversity Research (PPBio) and the Long-term ecological research site POPA (PELD Western Pará). They installed and maintained permanent plots in an Amazonian-savanna patch near to the village of Alter do Chão. Amazonian savannas constitute a threatened ecosystem comprising only 6% of the Amazon biome. Most of the studies focused on three main long-term ecological research questions, but the site was also of importance for other inquiries and for the training of young researchers, contributing 71 articles so far and 32 masters and doctorate theses. Here, we present the experimental design and results of standardized studies in the savannas and forest fragments near Alter do Chão that have been carried out over the years. We discuss the future prospects and local threats to the area (e.g. soy crops and land speculation), and highlight the need to incorporate Alter do Chão villagers in land-use planning in the region.

Observational and experimental evaluation of hemiparasite resistance in trees in the urban afforestation of Santarém, Pará, Brazil / Avaliação observacional e experimental da resistência a hemiparasitas em árvores da arborização urbana de Santarém, Pará, Brasil

ABSTRACT One of the problems affecting the quality of urban trees is their infestation by mistletoes (aerial hemiparasite plants of the order Santalales). Identification of the main types of trees infested, and of the causes of infestation patterns, can help infestation control and the planning of efficient planting regimes. In this sense, the aim of this study was to evaluate the patterns of hemiparasite infestation in trees in an Amazonian urban environment. We aimed to answer (1) which species of mistletoes occur on urban trees in the city of Santarém, in the Brazilian Amazon; (2) what is the proportion and intensity of infestation on infected trees; and (3) if differences in infestation rates among tree species can be explained by mistletoe-tree compatibility. We assessed mistletoe incidence and intensity of infestation on trees in the main avenues of the city. To evaluate the role of mistletoe-tree compatibility in the observed parasitism patterns, we carried out a seed inoculation experiment with seeds of the most abundant mistletoe, Passovia theloneura. Seeds were planted on three tree species (Andira inermis, Handroanthus serratifolius, and Mangifera indica). The overall infestation rate was 19.3%, with exotic tree species more infested than natives. The experiment showed that incompatibility between P. theloneura and the native H. serratifolius is primarily responsible for the observed non-infestation. Mistletoes germinated on A. inermis grew better than those on M. indica, contrary to the infestation prevalence found in the field, suggesting that patterns of infestation are also influenced by seed deposition processes.

RESUMO Um dos problemas que afetam a qualidade das árvores urbanas é sua infestação por ervas-de-passarinho (hemiparasitas aéreas da ordem Santalales). Identificação das principais espécies de árvores infestadas e das causas da infestação pode ajudar a controlar as ervas-de-passarinho e orientar o plantio de novas espécies de árvores. Nesse sentido, o objetivo deste estudo foi avaliar o padrão de infestação de hemiparasitas em árvores em um ambiente urbano da Amazônia. Nós buscamos responder: (1) quais espécies de ervas-de-passarinho ocorrem nas árvores urbanas da cidade de Santarém, na Amazônia Brasileira, (2) qual é a proporção e intensidade de infestação nas árvores afetadas e (3) se diferenças nas taxas de infestação entre as espécies de árvores podem ser explicadas pela compatibilidade entre ervas-de-passarinho e hospedeiro. Nós amostramos árvores nas principais avenidas da cidade. Para avaliar o papel da compatibilidade entre a erva-de-passarinho e o hospedeiro nos padrões de parasitismo observados, conduzimos um experimento de inoculação de sementes com a erva-de-passarinho mais abundante, Passovia theloneura. Sementes foram plantadas em três espécies de hospedeiros (Andira inermis, Handroanthus serratifolius e Mangifera indica). A taxa de infestação foi de 19,3%, com espécies exóticas mais infestadas do que as nativas. O experimento mostrou que a incompatibilidade entre P. theloneura e a nativa H. serratifolius é o principal fator responsável por sua não infestação. As ervas-de-passarinho que germinaram em A. inermis cresceram melhor do que aquelas em M. indica, contrário à prevalência de infestação encontrada no campo, o que sugere que os padrões de infestação são também influenciados por processos de deposição de sementes.

Correction: Modeling Occupancy of Hosts by Mistletoe Seeds after Accounting for Imperfect Detectability.

[This corrects the article DOI: 10.1371/journal.pone.0127004.].

Modeling occupancy of hosts by mistletoe seeds after accounting for imperfect detectability.

The detection of an organism in a given site is widely used as a state variable in many metapopulation and epidemiological studies. However, failure to detect the species does not necessarily mean that it is absent. Assessing detectability is important for occupancy (presence-absence) surveys; and identifying the factors reducing detectability may help improve survey precision and efficiency. A method was used to estimate the occupancy status of host trees colonized by mistletoe seeds of Psittacanthus plagiophyllus as a function of host covariates: host size and presence of mistletoe infections on the same or on the nearest neighboring host (the cashew tree Anacardium occidentale). The technique also evaluated the effect of taking detectability into account for estimating host occupancy by mistletoe seeds. Individual host trees were surveyed for presence of mistletoe seeds with the aid of two or three observers to estimate detectability and occupancy. Detectability was, on average, 17% higher in focal-host trees with infected neighbors, while decreased about 23 to 50% from smallest to largest hosts. The presence of mistletoe plants in the sample tree had negligible effect on detectability. Failure to detect hosts as occupied decreased occupancy by 2.5% on average, with maximum of 10% for large and isolated hosts. The method presented in this study has potential for use with metapopulation studies of mistletoes, especially those focusing on the seed stage, but also as improvement of accuracy in occupancy models estimates often used for metapopulation dynamics of tree-dwelling plants in general.

Functional extinction of birds drives rapid evolutionary changes in seed size.

Local extinctions have cascading effects on ecosystem functions, yet little is known about the potential for the rapid evolutionary change of species in human-modified scenarios. We show that the functional extinction of large-gape seed dispersers in the Brazilian Atlantic forest is associated with the consistent reduction of the seed size of a keystone palm species. Among 22 palm populations, areas deprived of large avian frugivores for several decades present smaller seeds than nondefaunated forests, with negative consequences for palm regeneration. Coalescence and phenotypic selection models indicate that seed size reduction most likely occurred within the past 100 years, associated with human-driven fragmentation. The fast-paced defaunation of large vertebrates is most likely causing unprecedented changes in the evolutionary trajectories and community composition of tropical forests.